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ORCIDBibTeX records: Shannan J. Ho Sui
@article{DBLP:journals/f1000research/PantanoPMS19,
author = {Lorena Pantano and
Francisco Pantano and
Eulalia Mart{\'{\i}} and
Shannan J. Ho Sui},
title = {Visualization of the small {RNA} transcriptome using seqclusterViz},
journal = {F1000Research},
volume = {8},
pages = {232},
year = {2019},
url = {https://doi.org/10.12688/f1000research.18142.1},
doi = {10.12688/F1000RESEARCH.18142.1},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/PantanoPMS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/SteinbaughPKBCP17,
author = {Michael J. Steinbaugh and
Lorena Pantano and
Rory D. Kirchner and
V{\'{\i}}ctor Barrera and
Brad A. Chapman and
Mary E. Piper and
Meeta Mistry and
Radhika S. Khetani and
Kayleigh Rutherford and
Oliver Hofmann and
John N. Hutchinson and
Shannan J. Ho Sui},
title = {bcbioRNASeq: {R} package for bcbio RNA-seq analysis},
journal = {F1000Research},
volume = {6},
pages = {1976},
year = {2017},
url = {https://doi.org/10.12688/f1000research.12093.1},
doi = {10.12688/F1000RESEARCH.12093.1},
timestamp = {Fri, 08 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/SteinbaughPKBCP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DimontHSFKCH14,
author = {Emmanuel Dimont and
Oliver Hofmann and
Shannan J. Ho Sui and
Alistair R. R. Forrest and
Hideya Kawaji and
Winston Hide},
title = {CAGExploreR: an {R} package for the analysis and visualization of
promoter dynamics across multiple experiments},
journal = {Bioinform.},
volume = {30},
number = {8},
pages = {1183--1184},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu125},
doi = {10.1093/BIOINFORMATICS/BTU125},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DimontHSFKCH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/ConsortiumFKRB14,
author = {The Fantom Consortium and
RIKEN PMII and
RIKEN CLST (DGT) and
Alistair R. R. Forrest and
Hideya Kawaji and
Michael Rehli and
J. Kenneth Baillie and
Michiel J. L. de Hoon and
Vanja Haberle and
Timo Lassmann and
Ivan V. Kulakovskiy and
Marina Lizio and
Masayoshi Itoh and
Robin Andersson and
Christopher J. Mungall and
Terrence F. Meehan and
Sebastian Schmeier and
Nicolas Bertin and
Mette J{\o}rgensen and
Emmanuel Dimont and
Erik Arner and
Christian Schmidl and
Ulf Schaefer and
Yulia A. Medvedeva and
Charles Plessy and
Morana Vitezic and
Jessica Severin and
Colin A. M. Semple and
Yuri Ishizu and
Robert S. Young and
Margherita Francescatto and
Intikhab Alam and
Davide Albanese and
Gabriel M. Altschuler and
Takahiro Arakawa and
John A. C. Archer and
Peter Arner and
Magda Babina and
Sarah Rennie and
Piotr J. Balwierz and
Anthony G. Beckhouse and
Swati Pradhan{-}Bhatt and
Judith A. Blake and
Antje Blumenthal and
Beatrice Bodega and
Alessandro Bonetti and
James Briggs and
Frank Brombacher and
A. Maxwell Burroughs and
Andrea Califano and
Carlo V. Cannistraci and
Daniel Carbajo and
Yun Chen and
Marco Chierici and
Yari Ciani and
Hans Clevers and
Emiliano Dalla and
Carrie A. Davis and
Michael Detmar and
Alexander D. Diehl and
Taeko Dohi and
Finn Drabl{\o}s and
Albert S. B. Edge and
Matthias Edinger and
Karl Ekwall and
Mitsuhiro Endoh and
Hideki Enomoto and
Michela Fagiolini and
Lynsey Fairbairn and
Hai Fang and
Mary C. Farach{-}Carson and
Geoffrey J. Faulkner and
Alexander V. Favorov and
Malcolm E. Fisher and
Martin C. Frith and
Rie Fujita and
Shiro Fukuda and
Cesare Furlanello and
Masaaki Furuno and
Jun{-}ichi Furusawa and
Teunis B. Geijtenbeek and
Andrew P. Gibson and
Thomas R. Gingeras and
Daniel Goldowitz and
Julian Gough and
Sven Guhl and
Reto Guler and
Stefano Gustincich and
Thomas J. Ha and
Masahide Hamaguchi and
Mitsuko Hara and
Matthias Harbers and
Jayson Harshbarger and
Akira Hasegawa and
Yuki Hasegawa and
Takehiro Hashimoto and
Meenhard Herlyn and
Kelly J. Hitchens and
Shannan J. Ho Sui and
Oliver M. Hofmann and
Ilka Hoof and
Fumi Hori and
Lukasz Huminiecki and
Kei Iida and
Tomokatsu Ikawa and
Boris R. Jankovic and
Hui Jia and
Anagha Joshi and
Giuseppe Jurman and
Bogumil Kaczkowski and
Chieko Kai and
Kaoru Kaida and
Ai Kaiho and
Kazuhiro Kajiyama and
Mutsumi Kanamori{-}Katayama and
Artem S. Kasianov and
Takeya Kasukawa and
Shintaro Katayama and
Sachi Kato and
Shuji Kawaguchi and
Hiroshi Kawamoto and
Yuki I. Kawamura and
Tsugumi Kawashima and
Judith S. Kempfle and
Tony J. Kenna and
Juha Kere and
Levon M. Khachigian and
Toshio Kitamura and
S. Peter Klinken and
Alan J. Knox and
Miki Kojima and
Soichi Kojima and
Naoto Kondo and
Haruhiko Koseki and
Shigeo Koyasu and
Sarah Krampitz and
Atsutaka Kubosaki and
Andrew T. Kwon and
Jeroen F. J. Laros and
Weonju Lee and
Andreas Lennartsson and
Kang Li and
Berit Lilje and
Leonard Lipovich and
Alan Mackay{-}Sim and
Ri{-}ichiroh Manabe and
Jessica Cara Mar and
Benoit Marchand and
Anthony Mathelier and
Niklas Mejhert and
Alison M. Meynert and
Yosuke Mizuno and
David A. de Lima Morais and
Hiromasa Morikawa and
Mitsuru Morimoto and
Kazuyo Moro and
Efthymios Motakis and
Hozumi Motohashi and
Christine Mummery and
Mitsuyoshi Murata and
Sayaka Nagao{-}Sato and
Yutaka Nakachi and
Fumio Nakahara and
Toshiyuki Nakamura and
Yukio Nakamura and
Kenichi Nakazato and
Erik van Nimwegen and
Noriko Ninomiya and
Hiromi Nishiyori and
Shohei Noma and
Tadasuke Nozaki and
Soichi Ogishima and
Naganari Ohkura and
Hiroko Ohmiya and
Hiroshi Ohno and
Mitsuhiro Ohshima and
Mariko Okada{-}Hatakeyama and
Yasushi Okazaki and
Valerio Orlando and
Dmitry A. Ovchinnikov and
Arnab Pain and
Robert Passier and
Margaret Patrikakis and
Helena Persson and
Silvano Piazza and
James G. D. Prendergast and
Owen J. L. Rackham and
Jordan A. Ramilowski and
Mamoon Rashid and
Timothy Ravasi and
Patrizia Rizzu and
Marco Roncador and
Sugata Roy and
Morten B. Rye and
Eri Saijyo and
Antti Sajantila and
Akiko Saka and
Shimon Sakaguchi and
Mizuho Sakai and
Hiroki Sato and
Hironori Sato and
Suzana Savvi and
Alka Saxena and
Claudio Schneider and
Erik A. Schultes and
Gundula G. Schulze{-}Tanzil and
Anita Schwegmann and
Thierry Sengstag and
Guojun Sheng and
Hisashi Shimoji and
Yishai Shimoni and
Jay W. Shin and
Christophe Simon and
Daisuke Sugiyama and
Takaaki Sugiyama and
Masanori Suzuki and
Naoko Suzuki and
Rolf K. Swoboda and
Peter A. C. 't Hoen and
Michihira Tagami and
Naoko Takahashi and
Jun Takai and
Hiroshi Tanaka and
Hideki Tatsukawa and
Zuotian Tatum and
Mark Thompson and
Hiroo Toyoda and
Tetsuro Toyoda and
Eivind Valen and
Marc van de Wetering and
Linda M. van den Berg and
Roberto Verardo and
Dipti Vijayan and
Ilya E. Vorontsov and
Wyeth W. Wasserman and
Shoko Watanabe and
Christine A. Wells and
Louise N. Winteringham and
Ernst Wolvetang and
Emily J. Wood and
Yoko Yamaguchi and
Masayuki Yamamoto and
Misako Yoneda and
Yohei Yonekura and
Shigehiro Yoshida and
Susan E. Zabierowski and
Peter G. Zhang and
Xiaobei Zhao and
Silvia Zucchelli and
Kim M. Summers and
Harukazu Suzuki and
Carsten O. Daub and
Jun Kawai and
Peter Heutink and
Winston Hide and
Tom C. Freeman and
Boris Lenhard and
Vladimir B. Bajic and
Martin S. Taylor and
Vsevolod J. Makeev and
Albin Sandelin and
David A. Hume and
Piero Carninci and
Yoshihide Hayashizaki},
title = {A promoter-level mammalian expression atlas},
journal = {Nat.},
volume = {507},
number = {7493},
pages = {462--470},
year = {2014},
url = {https://doi.org/10.1038/nature13182},
doi = {10.1038/NATURE13182},
timestamp = {Tue, 21 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nature/ConsortiumFKRB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/MerrillSCCD14,
author = {Emily Merrill and
Shannan J. Ho Sui and
Stephane Corlosquet and
Tim Clark and
Sudeshna Das},
editor = {Adrian Paschke and
Albert Burger and
Paolo Romano and
M. Scott Marshall and
Andrea Splendiani},
title = {Using eXframe to Build Semantic Web Genomics Repositories},
booktitle = {Proceedings of the 7th International Workshop on Semantic Web Applications
and Tools for Life Sciences, Berlin, Germany, December 9-11, 2014},
series = {{CEUR} Workshop Proceedings},
volume = {1320},
publisher = {CEUR-WS.org},
year = {2014},
url = {https://ceur-ws.org/Vol-1320/paper\_28.pdf},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/swat4ls/MerrillSCCD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SuiBRCMRMAHSKSACCSHH12,
author = {Shannan J. Ho Sui and
Kimberly Begley and
Dorothy Reilly and
Brad Chapman and
Ray McGovern and
Philippe Rocca{-}Serra and
Eamonn Maguire and
Gabriel M. Altschuler and
Terah A. A. Hansen and
Ramakrishna Sompallae and
Andrei Krivtsov and
Ramesh A. Shivdasani and
Scott A. Armstrong and
Aed{\'{\i}}n C. Culhane and
Mick Correll and
Susanna{-}Assunta Sansone and
Oliver Hofmann and
Winston Hide},
title = {The Stem Cell Discovery Engine: an integrated repository and analysis
system for cancer stem cell comparisons},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {984--991},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr1051},
doi = {10.1093/NAR/GKR1051},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SuiBRCMRMAHSKSACCSHH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SuiFAKW07,
author = {Shannan J. Ho Sui and
Debra L. Fulton and
David J. Arenillas and
Andrew T. Kwon and
Wyeth W. Wasserman},
title = {oPOSSUM: integrated tools for analysis of regulatory motif over-representation},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Web-Server-Issue},
pages = {245--252},
year = {2007},
url = {https://doi.org/10.1093/nar/gkm427},
doi = {10.1093/NAR/GKM427},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SuiFAKW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apbc/HuangFAPSMW06,
author = {Shao{-}Shan Huang and
Debra L. Fulton and
David J. Arenillas and
Paul Perco and
Shannan J. Ho Sui and
James R. Mortimer and
Wyeth W. Wasserman},
editor = {Tao Jiang and
Ueng{-}Cheng Yang and
Yi{-}Ping Phoebe Chen and
Limsoon Wong},
title = {Identification of Over-Represented Combinations of Transcription Factor
Binding Sites in Sets of Co-Expressed Genes},
booktitle = {Proceedings of 4th Asia-Pacific Bioinformatics Conference. 13-16 February
2006, Taipei, Taiwan},
pages = {247--256},
publisher = {Imperial College Press, London},
year = {2006},
url = {http://www.comp.nus.edu.sg/\%7Ewongls/psZ/apbc2006/216.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/apbc/HuangFAPSMW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WinsorLSUHCCHB05,
author = {Geoffrey L. Winsor and
Raymond Lo and
Shannan J. Ho Sui and
Korine S. E. Ung and
Shao{-}Shan Huang and
Dean Cheng and
Wai{-}Kay Ho Ching and
Robert E. W. Hancock and
Fiona S. L. Brinkman},
title = {\emph{Pseudomonas aeruginosa} Genome Database and PseudoCAP: facilitating
community-based, continually updated, genome annotation},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {338--343},
year = {2005},
url = {https://doi.org/10.1093/nar/gki047},
doi = {10.1093/NAR/GKI047},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WinsorLSUHCCHB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CherkasovSBJ04,
author = {Artem Cherkasov and
Shannan J. Ho Sui and
Robert C. Brunham and
Steven J. M. Jones},
title = {Structural characterization of genomes by large scale sequence-structure
threading: application of reliability analysis in structural genomics},
journal = {{BMC} Bioinform.},
volume = {5},
pages = {101},
year = {2004},
url = {https://doi.org/10.1186/1471-2105-5-101},
doi = {10.1186/1471-2105-5-101},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CherkasovSBJ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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