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ORCIDBibTeX records: Oliver Stegle
@proceedings{DBLP:conf/mlmhd/2023,
editor = {Andreas K. Maier and
Julia A. Schnabel and
Pallavi Tiwari and
Oliver Stegle},
title = {Machine Learning for Multimodal Healthcare Data - First International
Workshop, {ML4MHD} 2023, Honolulu, Hawaii, USA, July 29, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14315},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-3-031-47679-2},
doi = {10.1007/978-3-031-47679-2},
isbn = {978-3-031-47678-5},
timestamp = {Sat, 09 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/mlmhd/2023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WalterSV23,
author = {Florin C. Walter and
Oliver Stegle and
Britta Velten},
title = {FISHFactor: a probabilistic factor model for spatial transcriptomics
data with subcellular resolution},
journal = {Bioinform.},
volume = {39},
number = {5},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad183},
doi = {10.1093/BIOINFORMATICS/BTAD183},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WalterSV23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/CalabreseDDFHKL20,
author = {Claudia Calabrese and
Natalie R. Davidson and
Deniz Demircioglu and
Nuno A. Fonseca and
Yao He and
Andr{\'{e}} Kahles and
Kjong{-}Van Lehmann and
Fenglin Liu and
Yuichi Shiraishi and
Cameron M. Soulette and
Lara Urban and
Liliana Greger and
Siliang Li and
Dongbing Liu and
Marc D. Perry and
Qian Xiang and
Fan Zhang and
Junjun Zhang and
Peter Bailey and
Serap Erkek and
Katherine A. Hoadley and
Yong Hou and
Matthew R. Huska and
Helena Kilpinen and
Jan O. Korbel and
Maximillian G. Marin and
Julia Markowski and
Tannistha Nandi and
Qiang Pan{-}Hammarstr{\"{o}}m and
Chandra Sekhar Pedamallu and
Reiner Siebert and
Stefan G. Stark and
Hong Su and
Patrick Tan and
Sebastian M. Waszak and
Christina K. Yung and
Shida Zhu and
Philip Awadalla and
Matthew Meyerson and
B. F. Francis Ouellette and
Kui Wu and
Huanming Yang and
Samirkumar B. Amin and
Aur{\'{e}}lien Chateigner and
Isidro Cort{\'{e}}s{-}Ciriano and
Brian Craft and
Milana Frenkel{-}Morgenstern and
Mary Goldman and
Ekta Khurana and
Fabien C. Lamaze and
Chang Li and
Xiaobo Li and
Xinyue Li and
Xingmin Liu and
Morten Muhlig Nielsen and
Akinyemi I. Ojesina and
Peter J. Park and
Jakob Skou Pedersen and
Bin Tean Teh and
Jian Wang and
Heng Xiong and
Sergei Yakneen and
Chen Ye and
Xiuqing Zhang and
Liangtao Zheng and
Jingchun Zhu and
Chad Creighton and
Jonathan G{\"{o}}ke and
Roland F. Schwarz and
Oliver Stegle and
Zemin Zhang and
Alvis Brazma and
Gunnar R{\"{a}}tsch and
Angela N. Brooks},
title = {Genomic basis for {RNA} alterations in cancer},
journal = {Nat.},
volume = {578},
number = {7793},
pages = {129--136},
year = {2020},
url = {https://doi.org/10.1038/s41586-020-1970-0},
doi = {10.1038/S41586-020-1970-0},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nature/CalabreseDDFHKL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerjpre/LaehnemannKSMHR19,
author = {David Laehnemann and
Johannes K{\"{o}}ster and
Ewa Szczurek and
Davis J. McCarthy and
Stephanie C. Hicks and
Mark D. Robinson and
Catalina A. Vallejos and
Niko Beerenwinkel and
Kieran R. Campbell and
Ahmed Mahfouz and
Luca Pinello and
Pavel Skums and
Alexandros Stamatakis and
Camille Stephan{-}Otto Attolini and
Samuel Aparicio and
Jasmijn A. Baaijens and
Marleen Balvert and
Buys de Barbanson and
Antonio Cappuccio and
Giacomo Corleone and
Bas E. Dutilh and
Maria Florescu and
Victor Guryev and
Rens Holmer and
Katharina Jahn and
Thamar Jessurun Lobo and
Emma M. Keizer and
Indu Khatri and
Szymon M. Kielbasa and
Jan O. Korbel and
Alexey M. Kozlov and
Tzu{-}Hao Kuo and
Boudewijn P. F. Lelieveldt and
Ion I. Mandoiu and
John C. Marioni and
Tobias Marschall and
Felix M{\"{o}}lder and
Amir Niknejad and
Lukasz Raczkowski and
Marcel J. T. Reinders and
Jeroen de Ridder and
Antoine{-}Emmanuel Saliba and
Antonios Somarakis and
Oliver Stegle and
Fabian J. Theis and
Huan Yang and
Alex Zelikovsky and
Alice C. McHardy and
Benjamin J. Raphael and
Sohrab P. Shah and
Alexander Sch{\"{o}}nhuth},
title = {12 Grand Challenges in Single-Cell Data Science},
journal = {PeerJ Prepr.},
volume = {7},
pages = {e27885},
year = {2019},
url = {https://doi.org/10.7287/peerj.preprints.27885v3},
doi = {10.7287/PEERJ.PREPRINTS.27885V3},
timestamp = {Thu, 09 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/peerjpre/LaehnemannKSMHR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PapatheodorouFK18,
author = {Irene Papatheodorou and
Nuno A. Fonseca and
Maria Keays and
Y. Amy Tang and
Elisabet Barrera and
Wojciech Bazant and
Melissa L. Burke and
Anja F{\"{u}}llgrabe and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Nancy George and
Laura Huerta and
Satu Koskinen and
Suhaib Mohammed and
Matthew J. Geniza and
Justin Preece and
Pankaj Jaiswal and
Andrew F. Jarnuczak and
Wolfgang Huber and
Oliver Stegle and
Juan Antonio Vizca{\'{\i}}no and
Alvis Brazma and
Robert Petryszak},
title = {Expression Atlas: gene and protein expression across multiple studies
and organisms},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Database-Issue},
pages = {D246--D251},
year = {2018},
url = {https://doi.org/10.1093/nar/gkx1158},
doi = {10.1093/NAR/GKX1158},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PapatheodorouFK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KoscielnyACCFGH17,
author = {Gautier Koscielny and
Peter An and
Denise Carvalho{-}Silva and
Jennifer A. Cham and
Luca Fumis and
Rippa Gasparyan and
Samiul Hasan and
Nikiforos Karamanis and
Michael Maguire and
Eliseo Papa and
Andrea Pierleoni and
Miguel Pignatelli and
Theo Platt and
Francis Rowland and
Priyanka Wankar and
A. Patr{\'{\i}}cia Bento and
Tony Burdett and
Antonio Fabregat and
Simon A. Forbes and
Anna Gaulton and
Cristina Yenyxe Gonz{\'{a}}lez and
Henning Hermjakob and
Anne Hersey and
Steven Jupe and
Senay Kafkas and
Maria Keays and
Catherine Leroy and
Francisco{-}Javier Lopez and
Mar{\'{\i}}a P. Magari{\~{n}}os and
James Malone and
Johanna R. McEntyre and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Claire O'Donovan and
Irene Papatheodorou and
Helen E. Parkinson and
Barbara Palka and
Justin E. Paschall and
Robert Petryszak and
Naruemon Pratanwanich and
Sirarat Sarntivijai and
Gary Saunders and
Konstantinos Sidiropoulos and
Thomas Smith and
Zbyslaw Sondka and
Oliver Stegle and
Y. Amy Tang and
Edward Turner and
Brendan W. Vaughan and
Olga Vrousgou and
Xavier Watkins and
Maria Jesus Martin and
Philippe Sanseau and
Jessica Vamathevan and
Ewan Birney and
Jeffrey Barrett and
Ian Dunham},
title = {Open Targets: a platform for therapeutic target identification and
validation},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D985--D994},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1055},
doi = {10.1093/NAR/GKW1055},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KoscielnyACCFGH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GreenfieldSR16,
author = {Daniel L. Greenfield and
Oliver Stegle and
Alban Rrustemi},
title = {GeneCodeq: quality score compression and improved genotyping using
a Bayesian framework},
journal = {Bioinform.},
volume = {32},
number = {20},
pages = {3124--3132},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw385},
doi = {10.1093/BIOINFORMATICS/BTW385},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GreenfieldSR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pkdd/PratanwanichLS16,
author = {Naruemon Pratanwanich and
Pietro Li{\`{o}} and
Oliver Stegle},
editor = {Paolo Frasconi and
Niels Landwehr and
Giuseppe Manco and
Jilles Vreeken},
title = {Warped Matrix Factorisation for Multi-view Data Integration},
booktitle = {Machine Learning and Knowledge Discovery in Databases - European Conference,
{ECML} {PKDD} 2016, Riva del Garda, Italy, September 19-23, 2016,
Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {9852},
pages = {789--804},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-46227-1\_49},
doi = {10.1007/978-3-319-46227-1\_49},
timestamp = {Thu, 05 Dec 2019 17:07:16 +0100},
biburl = {https://dblp.org/rec/conf/pkdd/PratanwanichLS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/LehmannKKLSSR15,
author = {Kjong{-}Van Lehmann and
Andr{\'{e}} Kahles and
Cyriac Kandoth and
William Lee and
Nikolaus Schultz and
Oliver Stegle and
Gunnar R{\"{a}}tsch},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein and
Marylyn D. Ritchie},
title = {Integrative Genome-wide Analysis of the Determinants of {RNA} Splicing
in Kidney Renal Clear Cell Carcinoma},
booktitle = {Biocomputing 2015: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 4-8, 2015},
pages = {44--55},
year = {2015},
url = {http://psb.stanford.edu/psb-online/proceedings/psb15/lehmann.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/LehmannKKLSSR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/DudleyLSBP15,
author = {Joel T. Dudley and
Jennifer Listgarten and
Oliver Stegle and
Steven E. Brenner and
Leopold Parts},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein and
Marylyn D. Ritchie},
title = {Session introduction},
booktitle = {Biocomputing 2015: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 4-8, 2015},
pages = {342--346},
year = {2015},
url = {http://psb.stanford.edu/psb-online/proceedings/psb15/intro-pm.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/DudleyLSBP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/ListgartenSMBP14,
author = {Jennifer Listgarten and
Oliver Stegle and
Quaid Morris and
Steven E. Brenner and
Leopold Parts},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein and
Marylyn D. Ritchie},
title = {Session introduction},
booktitle = {Biocomputing 2014: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2014},
pages = {247--249},
year = {2014},
url = {http://psb.stanford.edu/psb-online/proceedings/psb14/intro-pm.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/ListgartenSMBP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RakitschLSB13,
author = {Barbara Rakitsch and
Christoph Lippert and
Oliver Stegle and
Karsten M. Borgwardt},
title = {A Lasso multi-marker mixed model for association mapping with population
structure correction},
journal = {Bioinform.},
volume = {29},
number = {2},
pages = {206--214},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/bts669},
doi = {10.1093/BIOINFORMATICS/BTS669},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RakitschLSB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FusiLBLS13,
author = {Nicol{\'{o}} Fusi and
Christoph Lippert and
Karsten M. Borgwardt and
Neil D. Lawrence and
Oliver Stegle},
title = {Detecting regulatory gene-environment interactions with unmeasured
environmental factors},
journal = {Bioinform.},
volume = {29},
number = {11},
pages = {1382--1389},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt148},
doi = {10.1093/BIOINFORMATICS/BTT148},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FusiLBLS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/RakitschLBS13,
author = {Barbara Rakitsch and
Christoph Lippert and
Karsten M. Borgwardt and
Oliver Stegle},
editor = {Christopher J. C. Burges and
L{\'{e}}on Bottou and
Zoubin Ghahramani and
Kilian Q. Weinberger},
title = {It is all in the noise: Efficient multi-task Gaussian process inference
with structured residuals},
booktitle = {Advances in Neural Information Processing Systems 26: 27th Annual
Conference on Neural Information Processing Systems 2013. Proceedings
of a meeting held December 5-8, 2013, Lake Tahoe, Nevada, United States},
pages = {1466--1474},
year = {2013},
url = {https://proceedings.neurips.cc/paper/2013/hash/59c33016884a62116be975a9bb8257e3-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/RakitschLBS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/StegleBML13,
author = {Oliver Stegle and
Steven E. Brenner and
Quaid Morris and
Jennifer Listgarten},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Session introduction},
booktitle = {Biocomputing 2013: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2013},
pages = {171--174},
publisher = {World Scientific Publishing},
year = {2013},
url = {http://psb.stanford.edu/psb-online/proceedings/psb13/intro-pm.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/StegleBML13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/MorrisBLS13,
author = {Quaid Morris and
Steven E. Brenner and
Jennifer Listgarten and
Oliver Stegle},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {The Future of Genome-Based Medicine},
booktitle = {Biocomputing 2013: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2013},
pages = {456--458},
publisher = {World Scientific Publishing},
year = {2013},
url = {http://psb.stanford.edu/psb-online/proceedings/psb13/wkshp-pm.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/MorrisBLS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KaraletsosSDWB12,
author = {Theofanis Karaletsos and
Oliver Stegle and
Christine Dreyer and
John M. Winn and
Karsten M. Borgwardt},
title = {ShapePheno: unsupervised extraction of shape phenotypes from biological
image collections},
journal = {Bioinform.},
volume = {28},
number = {7},
pages = {1001--1008},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts081},
doi = {10.1093/BIOINFORMATICS/BTS081},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KaraletsosSDWB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/FusiSL12,
author = {Nicol{\'{o}} Fusi and
Oliver Stegle and
Neil D. Lawrence},
title = {Joint Modelling of Confounding Factors and Prominent Genetic Regulators
Provides Increased Accuracy in Genetical Genomics Studies},
journal = {PLoS Comput. Biol.},
volume = {8},
number = {1},
year = {2012},
url = {https://doi.org/10.1371/journal.pcbi.1002330},
doi = {10.1371/JOURNAL.PCBI.1002330},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/FusiSL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/StegleRML12,
author = {Oliver Stegle and
Frederick P. Roth and
Quaid Morris and
Jennifer Listgarten},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Session introduction},
booktitle = {Biocomputing 2012: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2012},
pages = {323--326},
publisher = {World Scientific Publishing},
year = {2012},
url = {http://psb.stanford.edu/psb-online/proceedings/psb12/intro-pm.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/StegleRML12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1202-3737,
author = {Dominik Janzing and
Eleni Sgouritsa and
Oliver Stegle and
Jonas Peters and
Bernhard Sch{\"{o}}lkopf},
title = {Detecting low-complexity unobserved causes},
journal = {CoRR},
volume = {abs/1202.3737},
year = {2012},
url = {http://arxiv.org/abs/1202.3737},
eprinttype = {arXiv},
eprint = {1202.3737},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1202-3737.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1212-4788,
author = {Dominik G. Grimm and
Bastian Greshake and
Stefan Kleeberger and
Christoph Lippert and
Oliver Stegle and
Bernhard Sch{\"{o}}lkopf and
Detlef Weigel and
Karsten M. Borgwardt},
title = {easyGWAS: An integrated interspecies platform for performing genome-wide
association studies},
journal = {CoRR},
volume = {abs/1212.4788},
year = {2012},
url = {http://arxiv.org/abs/1212.4788},
eprinttype = {arXiv},
eprint = {1212.4788},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1212-4788.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KlotzbucherKSSMWB11,
author = {Karin Klotzb{\"{u}}cher and
Yasushi Kobayashi and
Nino Shervashidze and
Oliver Stegle and
Bertram M{\"{u}}ller{-}Myhsok and
Detlef Weigel and
Karsten M. Borgwardt},
title = {Efficient branch-and-bound techniques for two-locus association mapping},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-11}},
pages = {A3},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S11-A3},
doi = {10.1186/1471-2105-12-S11-A3},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KlotzbucherKSSMWB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/StegleLMLB11,
author = {Oliver Stegle and
Christoph Lippert and
Joris M. Mooij and
Neil D. Lawrence and
Karsten M. Borgwardt},
editor = {John Shawe{-}Taylor and
Richard S. Zemel and
Peter L. Bartlett and
Fernando C. N. Pereira and
Kilian Q. Weinberger},
title = {Efficient inference in matrix-variate Gaussian models with {\textbackslash}iid
observation noise},
booktitle = {Advances in Neural Information Processing Systems 24: 25th Annual
Conference on Neural Information Processing Systems 2011. Proceedings
of a meeting held 12-14 December 2011, Granada, Spain},
pages = {630--638},
year = {2011},
url = {https://proceedings.neurips.cc/paper/2011/hash/a732804c8566fc8f498947ea59a841f8-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/StegleLMLB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/uai/JanzingSSPS11,
author = {Dominik Janzing and
Eleni Sgouritsa and
Oliver Stegle and
Jonas Peters and
Bernhard Sch{\"{o}}lkopf},
editor = {F{\'{a}}bio Gagliardi Cozman and
Avi Pfeffer},
title = {Detecting low-complexity unobserved causes},
booktitle = {{UAI} 2011, Proceedings of the Twenty-Seventh Conference on Uncertainty
in Artificial Intelligence, Barcelona, Spain, July 14-17, 2011},
pages = {383--391},
publisher = {{AUAI} Press},
year = {2011},
url = {https://dslpitt.org/uai/displayArticleDetails.jsp?mmnu=1\&\#38;smnu=2\&\#38;article\_id=2185\&\#38;proceeding\_id=27},
timestamp = {Wed, 03 Feb 2021 11:09:03 +0100},
biburl = {https://dblp.org/rec/conf/uai/JanzingSSPS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/StegleDCWGB10,
author = {Oliver Stegle and
Katherine J. Denby and
Emma J. Cooke and
David L. Wild and
Zoubin Ghahramani and
Karsten M. Borgwardt},
title = {A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential
Gene Expression in Microarray Time Series},
journal = {J. Comput. Biol.},
volume = {17},
number = {3},
pages = {355--367},
year = {2010},
url = {https://doi.org/10.1089/cmb.2009.0175},
doi = {10.1089/CMB.2009.0175},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/StegleDCWGB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/SteglePDW10,
author = {Oliver Stegle and
Leopold Parts and
Richard Durbin and
John M. Winn},
title = {A Bayesian Framework to Account for Complex Non-Genetic Factors in
Gene Expression Levels Greatly Increases Power in eQTL Studies},
journal = {PLoS Comput. Biol.},
volume = {6},
number = {5},
year = {2010},
url = {https://doi.org/10.1371/journal.pcbi.1000770},
doi = {10.1371/JOURNAL.PCBI.1000770},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/SteglePDW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/MooijSJZS10,
author = {Joris M. Mooij and
Oliver Stegle and
Dominik Janzing and
Kun Zhang and
Bernhard Sch{\"{o}}lkopf},
editor = {John D. Lafferty and
Christopher K. I. Williams and
John Shawe{-}Taylor and
Richard S. Zemel and
Aron Culotta},
title = {Probabilistic latent variable models for distinguishing between cause
and effect},
booktitle = {Advances in Neural Information Processing Systems 23: 24th Annual
Conference on Neural Information Processing Systems 2010. Proceedings
of a meeting held 6-9 December 2010, Vancouver, British Columbia,
Canada},
pages = {1687--1695},
publisher = {Curran Associates, Inc.},
year = {2010},
url = {https://proceedings.neurips.cc/paper/2010/hash/c850371fda6892fbfd1c5a5b457e5777-Abstract.html},
timestamp = {Mon, 16 May 2022 15:41:51 +0200},
biburl = {https://dblp.org/rec/conf/nips/MooijSJZS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SteglePMMH09,
author = {Oliver Stegle and
Linda Payet and
Jean{-}Louis Mergny and
David J. C. MacKay and
Julian Leon Huppert},
title = {Predicting and understanding the stability of G-quadruplexes},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp210},
doi = {10.1093/BIOINFORMATICS/BTP210},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SteglePMMH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/StegleDWMMGB09,
author = {Oliver Stegle and
Katherine J. Denby and
David L. Wild and
Stuart McHattie and
Andrew Meade and
Zoubin Ghahramani and
Karsten M. Borgwardt},
editor = {Ivo Grosse and
Steffen Neumann and
Stefan Posch and
Falk Schreiber and
Peter F. Stadler},
title = {Discovering Temporal Patterns of Differential Gene Expression in Microarray
Time Series},
booktitle = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
Martin Luther University Halle-Wittenberg, Germany},
series = {{LNI}},
volume = {{P-157}},
pages = {133--142},
publisher = {{GI}},
year = {2009},
url = {https://dl.gi.de/handle/20.500.12116/20297},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gcb/StegleDWMMGB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/StegleDWGB09,
author = {Oliver Stegle and
Katherine J. Denby and
David L. Wild and
Zoubin Ghahramani and
Karsten M. Borgwardt},
editor = {Serafim Batzoglou},
title = {A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential
Gene Expression in Microarray Time Series},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {201--216},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_14},
doi = {10.1007/978-3-642-02008-7\_14},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/StegleDWGB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/jmlr/LippertSGB09,
author = {Christoph Lippert and
Oliver Stegle and
Zoubin Ghahramani and
Karsten M. Borgwardt},
editor = {David A. Van Dyk and
Max Welling},
title = {A kernel method for unsupervised structured network inference},
booktitle = {Proceedings of the Twelfth International Conference on Artificial
Intelligence and Statistics, {AISTATS} 2009, Clearwater Beach, Florida,
USA, April 16-18, 2009},
series = {{JMLR} Proceedings},
volume = {5},
pages = {368--375},
publisher = {JMLR.org},
year = {2009},
url = {http://proceedings.mlr.press/v5/lippert09a.html},
timestamp = {Wed, 29 May 2019 08:41:44 +0200},
biburl = {https://dblp.org/rec/journals/jmlr/LippertSGB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tbe/StegleFMB08,
author = {Oliver Stegle and
Sebastian V. Fallert and
David J. C. MacKay and
S{\o}ren Brage},
title = {Gaussian Process Robust Regression for Noisy Heart Rate Data},
journal = {{IEEE} Trans. Biomed. Eng.},
volume = {55},
number = {9},
pages = {2143--2151},
year = {2008},
url = {https://doi.org/10.1109/TBME.2008.923118},
doi = {10.1109/TBME.2008.923118},
timestamp = {Wed, 02 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tbe/StegleFMB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/AdamsS08,
author = {Ryan Prescott Adams and
Oliver Stegle},
editor = {William W. Cohen and
Andrew McCallum and
Sam T. Roweis},
title = {Gaussian process product models for nonparametric nonstationarity},
booktitle = {Machine Learning, Proceedings of the Twenty-Fifth International Conference
{(ICML} 2008), Helsinki, Finland, June 5-9, 2008},
series = {{ACM} International Conference Proceeding Series},
volume = {307},
pages = {1--8},
publisher = {{ACM}},
year = {2008},
url = {https://doi.org/10.1145/1390156.1390157},
doi = {10.1145/1390156.1390157},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icml/AdamsS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/StegleKDW08,
author = {Oliver Stegle and
Anitha Kannan and
Richard Durbin and
John M. Winn},
editor = {Martin Vingron and
Limsoon Wong},
title = {Accounting for Non-genetic Factors Improves the Power of eQTL Studies},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {411--422},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_35},
doi = {10.1007/978-3-540-78839-3\_35},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/StegleKDW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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