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ORCIDBibTeX records: Hugh P. Shanahan
@article{DBLP:journals/jcb/AlnasirS23,
author = {Jamie J. Alnasir and
Hugh P. Shanahan},
title = {Intra-Exon Motif Correlations as a Proxy Measure for Mean Per-Tile
Sequence Quality Data in RNA-Seq},
journal = {J. Comput. Biol.},
volume = {30},
number = {2},
pages = {131--148},
year = {2023},
url = {https://doi.org/10.1089/cmb.2021.0476},
doi = {10.1089/CMB.2021.0476},
timestamp = {Sat, 25 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/AlnasirS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/QuickCDCBSP23,
author = {Robert Quick and
Marcela Alfaro Cordoba and
Stephen Diggs and
Raphael Cobe and
Louise Bezuidenhout and
Hugh P. Shanahan and
Bianca Peterson},
title = {Foundational Data Science Training for Health Equity Researchers at
Minority Serving Institutions: {A} SoRDS Event},
booktitle = {11th {IEEE} International Conference on Healthcare Informatics, {ICHI}
2023, Houston, TX, USA, June 26-29, 2023},
pages = {663--667},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/ICHI57859.2023.00115},
doi = {10.1109/ICHI57859.2023.00115},
timestamp = {Fri, 08 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ichi/QuickCDCBSP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/frma/ShanahanB22,
author = {Hugh P. Shanahan and
Louise Bezuidenhout},
title = {Rethinking the {A} in {FAIR} Data: Issues of Data Access and Accessibility
in Research},
journal = {Frontiers Res. Metrics Anal.},
volume = {7},
year = {2022},
url = {https://doi.org/10.3389/frma.2022.912456},
doi = {10.3389/FRMA.2022.912456},
timestamp = {Sun, 13 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/frma/ShanahanB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/datascience/BezuidenhoutDWS21,
author = {Louise Bezuidenhout and
Sara Drummond{-}Curtis and
Bridget Walker and
Hugh P. Shanahan and
Marcela Alfaro Cordoba},
title = {A School and a Network: {CODATA-RDA} Data Science Summer Schools Alumni
Survey},
journal = {Data Sci. J.},
volume = {20},
pages = {10},
year = {2021},
url = {https://doi.org/10.5334/dsj-2021-010},
doi = {10.5334/DSJ-2021-010},
timestamp = {Mon, 21 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/datascience/BezuidenhoutDWS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/patterns/ShanahanHW21,
author = {Hugh P. Shanahan and
Nancy Hoebelheinrich and
Angus Whyte},
title = {Progress toward a comprehensive teaching approach to the {FAIR} data
principles},
journal = {Patterns},
volume = {2},
number = {10},
pages = {100324},
year = {2021},
url = {https://doi.org/10.1016/j.patter.2021.100324},
doi = {10.1016/J.PATTER.2021.100324},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/patterns/ShanahanHW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AlnasirS20,
author = {Jamie J. Alnasir and
Hugh P. Shanahan},
title = {The application of Hadoop in structural bioinformatics},
journal = {Briefings Bioinform.},
volume = {21},
number = {1},
pages = {96--105},
year = {2020},
url = {https://doi.org/10.1093/bib/bby106},
doi = {10.1093/BIB/BBY106},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/AlnasirS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dint/McQuiltonBBGCIL20,
author = {Peter McQuilton and
Dominique Batista and
Oya Beyan and
Ram{\'{o}}n Granell and
Simon J. Coles and
Massimiliano Izzo and
Allyson L. Lister and
Robert Pergl and
Philippe Rocca{-}Serra and
Ben Schaap and
Hugh P. Shanahan and
Milo Thurston and
Susanna{-}Assunta Sansone},
title = {Helping the Consumers and Producers of Standards, Repositories and
Policies to Enable {FAIR} Data},
journal = {Data Intell.},
volume = {2},
number = {1-2},
pages = {151--157},
year = {2020},
url = {https://doi.org/10.1162/dint\_a\_00037},
doi = {10.1162/DINT\_A\_00037},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/dint/McQuiltonBBGCIL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijdc/BangertDDGSV20,
author = {Daniel Bangert and
Joy Davidson and
Steve Diggs and
Marjan Grootveld and
Hugh P. Shanahan and
Shanmugasundaram Venkataraman},
title = {The {CODATA-RDA} Data Steward School},
journal = {Int. J. Digit. Curation},
volume = {15},
number = {1},
pages = {1--6},
year = {2020},
url = {http://www.ijdc.net/article/view/711},
timestamp = {Thu, 26 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijdc/BangertDDGSV20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/see/BezuidenhoutQS20,
author = {Louise Bezuidenhout and
Robert Quick and
Hugh P. Shanahan},
title = {"Ethics When You Least Expect It": {A} Modular Approach
to Short Course Data Ethics Instruction},
journal = {Sci. Eng. Ethics},
volume = {26},
number = {4},
pages = {2189--2213},
year = {2020},
url = {https://doi.org/10.1007/s11948-020-00197-2},
doi = {10.1007/S11948-020-00197-2},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/see/BezuidenhoutQS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1902-11162,
author = {Peter Wittenburg and
Hana Pergl Sustkova and
Annalisa Montesanti and
Margreet Bloemers and
S. H. de Waard and
Mark A. Musen and
John Graybeal and
Kristina M. Hettne and
Annika Jacobsen and
Robert Pergl and
Rob W. W. Hooft and
Christine Staiger and
Celia W. G. van Gelder and
Sebastiaan L. Knijnenburg and
A. C. van Arkel and
Bert Meerman and
Mark D. Wilkinson and
Susanna{-}Assunta Sansone and
Philippe Rocca{-}Serra and
Peter McQuilton and
Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n and
G. J. C. Aben and
Patr{\'{\i}}cia Henning and
Maria Simone de Menezes Alencar and
C. Ribeiro and
C. R. L. Silva and
Lu{\'{\i}}s Fernando Say{\~{a}}o and
Luana Sales and
Viviane Veiga and
Jefferson Lima and
Simone Dib and
Paula Xavier dos Santos and
R. Murtinho and
Jakob Tendel and
B. F. Schaap and
P. M. Brouwer and
A. K. Gavai and
Yamine Bouzembrak and
Hans J. P. Marvin and
Albert Mons and
Tobias Kuhn and
A. A. Gambardella and
Ricardo de Miranda Azevedo and
Vesa Muhonen and
Mira van der Naald and
N. W. Smit and
M. J. Buys and
Taco F. de Bruin and
Fieke Schoots and
H. J. E. Goodson and
Henry S. Rzepa and
Keith G. Jeffery and
Hugh P. Shanahan and
M. Axton and
Veniamin Tkachenko and
Anne Deslattes Mays and
Natalie Meyers and
Michael Conlon and
Laurel L. Haak and
Erik A. Schultes},
title = {The {FAIR} Funder pilot programme to make it easy for funders to require
and for grantees to produce {FAIR} Data},
journal = {CoRR},
volume = {abs/1902.11162},
year = {2019},
url = {http://arxiv.org/abs/1902.11162},
eprinttype = {arXiv},
eprint = {1902.11162},
timestamp = {Sat, 23 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1902-11162.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijfcs/AlnasirS18,
author = {Jamie J. Alnasir and
Hugh P. Shanahan},
title = {Transcriptomics: Quantifying Non-Uniform Read Distribution Using MapReduce},
journal = {Int. J. Found. Comput. Sci.},
volume = {29},
number = {8},
pages = {1355--1372},
year = {2018},
url = {https://doi.org/10.1142/S0129054118430086},
doi = {10.1142/S0129054118430086},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijfcs/AlnasirS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/RadwanS18,
author = {Golestan Sally Radwan and
Hugh P. Shanahan},
editor = {Milan Ceska and
David Safr{\'{a}}nek},
title = {Systems Metagenomics: Applying Systems Biology Thinking to Human Microbiome
Analysis},
booktitle = {Computational Methods in Systems Biology - 16th International Conference,
{CMSB} 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11095},
pages = {318--321},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-99429-1\_22},
doi = {10.1007/978-3-319-99429-1\_22},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cmsb/RadwanS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/AlnasirS17,
author = {Jamie J. Alnasir and
Hugh P. Shanahan},
title = {A Novel Method to Detect Bias in Short Read {NGS} Data},
journal = {J. Integr. Bioinform.},
volume = {14},
number = {3},
year = {2017},
url = {https://doi.org/10.1515/jib-2017-0025},
doi = {10.1515/JIB-2017-0025},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/AlnasirS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/ChenHSO17,
author = {Ming Chen and
Andrew P. Harrison and
Hugh P. Shanahan and
Yuriy L. Orlov},
title = {Biological Big Bytes: Integrative Analysis of Large Biological Datasets},
journal = {J. Integr. Bioinform.},
volume = {14},
number = {3},
year = {2017},
url = {https://doi.org/10.1515/jib-2017-0052},
doi = {10.1515/JIB-2017-0052},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/ChenHSO17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/14/HarrisonS14,
author = {Andrew P. Harrison and
Hugh P. Shanahan},
editor = {Ming Chen and
Ralf Hofest{\"{a}}dt},
title = {An Overview of Gene Regulation},
booktitle = {Approaches in Integrative Bioinformatics - Towards the Virtual Cell},
pages = {21--69},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-642-41281-3\_2},
doi = {10.1007/978-3-642-41281-3\_2},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/books/sp/14/HarrisonS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kdd/Shanahan09,
author = {Hugh P. Shanahan},
editor = {Christophe Costa Flor{\^{e}}ncio and
Fabrizio Costa and
Jan Ramon and
Joost N. Kok},
title = {Can we improve on the identification of transcription factor binding
sites?},
booktitle = {Proceedings of the {ACM} {SIGKDD} Workshop on Statistical and Relational
Learning in Bioinformatics, Paris, France, June 28, 2009},
pages = {39--40},
publisher = {{ACM}},
year = {2009},
url = {https://doi.org/10.1145/1562090.1562099},
doi = {10.1145/1562090.1562099},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/kdd/Shanahan09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Ferrer-CostaSJT05,
author = {Carles Ferrer{-}Costa and
Hugh P. Shanahan and
Susan Jones and
Janet M. Thornton},
title = {HTHquery: a method for detecting DNA-binding proteins with a helix-turn-helix
structural motif},
journal = {Bioinform.},
volume = {21},
number = {18},
pages = {3679--3680},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti575},
doi = {10.1093/BIOINFORMATICS/BTI575},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Ferrer-CostaSJT05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShanahanT04,
author = {Hugh P. Shanahan and
Janet M. Thornton},
title = {An examination of the conservation of surface patch polarity for proteins},
journal = {Bioinform.},
volume = {20},
number = {14},
pages = {2197--2204},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth218},
doi = {10.1093/BIOINFORMATICS/BTH218},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShanahanT04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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