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ORCIDBibTeX records: Heladia Salgado
@article{DBLP:journals/bioinformatics/ChavezBSASCR20,
author = {Joselyn Ch{\'{a}}vez and
Carmina Barberena{-}Jonas and
Jesus E. Sotelo{-}Fonseca and
Jos{\'{e}} Alquicira{-}Hern{\'{a}}ndez and
Heladia Salgado and
Leonardo Collado{-}Torres and
Alejandro Reyes},
title = {Programmatic access to bacterial regulatory networks with regutools},
journal = {Bioinform.},
volume = {36},
number = {16},
pages = {4532--4534},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btaa575},
doi = {10.1093/BIOINFORMATICS/BTAA575},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChavezBSASCR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TierrafriaMCSAI19,
author = {V{\'{\i}}ctor H. Tierrafr{\'{\i}}a and
Citlalli Mej{\'{\i}}a{-}Almonte and
J. M. Camacho{-}Zaragoza and
Heladia Salgado and
K. Alquicira and
Chu Ishida and
Socorro Gama{-}Castro and
Julio Collado{-}Vides},
title = {{MCO:} towards an ontology and unified vocabulary for a framework-based
annotation of microbial growth conditions},
journal = {Bioinform.},
volume = {35},
number = {5},
pages = {856--864},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty689},
doi = {10.1093/BIOINFORMATICS/BTY689},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TierrafriaMCSAI19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Santos-Zavaleta19,
author = {Alberto Santos{-}Zavaleta and
Heladia Salgado and
Socorro Gama{-}Castro and
Mishael S{\'{a}}nchez{-}P{\'{e}}rez and
Laura G{\'{o}}mez{-}Romero and
Daniela Ledezma{-}Tejeida and
Jair Santiago Garc{\'{\i}}a{-}Sotelo and
Kevin Alquicira{-}Hern{\'{a}}ndez and
Luis Mu{\~{n}}iz{-}Rascado and
Pablo Pe{\~{n}}a{-}Loredo and
Cecilia Ishida{-}Guti{\'{e}}rrez and
David A. Vel{\'{a}}zquez{-}Ram{\'{\i}}rez and
Victor del Moral{-}Ch{\'{a}}vez and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Carlos{-}Francisco M{\'{e}}ndez{-}Cruz and
James E. Galagan and
Julio Collado{-}Vides},
title = {RegulonDB v 10.5: tackling challenges to unify classic and high throughput
knowledge of gene regulation in E. coli {K-12}},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Database-Issue},
pages = {D212--D220},
year = {2019},
url = {https://doi.org/10.1093/nar/gky1077},
doi = {10.1093/NAR/GKY1077},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Santos-Zavaleta19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Gama-CastroSSLM16,
author = {Socorro Gama{-}Castro and
Heladia Salgado and
Alberto Santos{-}Zavaleta and
Daniela Ledezma{-}Tejeida and
Luis Mu{\~{n}}iz{-}Rascado and
Jair Santiago Garc{\'{\i}}a{-}Sotelo and
Kevin Alquicira{-}Hern{\'{a}}ndez and
Irma Mart{\'{\i}}nez{-}Flores and
Lucia Pannier and
Jaime Abraham Castro{-}Mondrag{\'{o}}n and
Alejandra Medina{-}Rivera and
Hilda Solano{-}Lira and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Ernesto P{\'{e}}rez{-}Rueda and
Shirley Alquicira{-}Hern{\'{a}}ndez and
Liliana Porr{\'{o}}n{-}Sotelo and
Alejandra L{\'{o}}pez{-}Fuentes and
Anastasia Hern{\'{a}}ndez{-}Koutoucheva and
Victor del Moral{-}Ch{\'{a}}vez and
Fabio Rinaldi and
Julio Collado{-}Vides},
title = {RegulonDB version 9.0: high-level integration of gene regulation,
coexpression, motif clustering and beyond},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {133--143},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1156},
doi = {10.1093/NAR/GKV1156},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Gama-CastroSSLM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/WeissMHSSMC13,
author = {Verena Weiss and
Alejandra Medina{-}Rivera and
Araceli M. Huerta and
Alberto Santos{-}Zavaleta and
Heladia Salgado and
Enrique Morett and
Julio Collado{-}Vides},
title = {Evidence classification of high-throughput protocols and confidence
integration in RegulonDB},
journal = {Database J. Biol. Databases Curation},
volume = {2013},
year = {2013},
url = {https://doi.org/10.1093/database/bas059},
doi = {10.1093/DATABASE/BAS059},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/WeissMHSSMC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SalgadoPGSMGWSMMSAALPHBBPOLJVMHMC13,
author = {Heladia Salgado and
Mart{\'{\i}}n Peralta{-}Gil and
Socorro Gama{-}Castro and
Alberto Santos{-}Zavaleta and
Luis Mu{\~{n}}iz{-}Rascado and
Jair S. Garc{\'{\i}}a{-}Sotelo and
Verena Weiss and
Hilda Solano{-}Lira and
Irma Mart{\'{\i}}nez{-}Flores and
Alejandra Medina{-}Rivera and
Gerardo Salgado{-}Osorio and
Shirley Alquicira{-}Hern{\'{a}}ndez and
Kevin Alquicira{-}Hern{\'{a}}ndez and
Alejandra L{\'{o}}pez{-}Fuentes and
Liliana Porr{\'{o}}n{-}Sotelo and
Araceli M. Huerta and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Yalbi Itzel Balderas{-}Mart{\'{\i}}nez and
Lucia Pannier and
Maricela Olvera and
Aurora Labastida and
Ver{\'{o}}nica Jim{\'{e}}nez{-}Jacinto and
Leticia Vega{-}Alvarado and
Victor del Moral{-}Ch{\'{a}}vez and
Alfredo Hern{\'{a}}ndez{-}Alvarez and
Enrique Morett and
Julio Collado{-}Vides},
title = {RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory
phrases, cross-validated gold standards and more},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {203--213},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1201},
doi = {10.1093/NAR/GKS1201},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SalgadoPGSMGWSMMSAALPHBBPOLJVMHMC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Gama-CastroSPSMSJWGLPAMMAMBMHMCTVOOGMC11,
author = {Socorro Gama{-}Castro and
Heladia Salgado and
Mart{\'{\i}}n Peralta{-}Gil and
Alberto Santos{-}Zavaleta and
Luis Mu{\~{n}}iz{-}Rascado and
Hilda Solano{-}Lira and
Ver{\'{o}}nica Jim{\'{e}}nez{-}Jacinto and
Verena Weiss and
Jair S. Garc{\'{\i}}a{-}Sotelo and
Alejandra L{\'{o}}pez{-}Fuentes and
Liliana Porr{\'{o}}n{-}Sotelo and
Shirley Alquicira{-}Hern{\'{a}}ndez and
Alejandra Medina{-}Rivera and
Irma Mart{\'{\i}}nez{-}Flores and
Kevin Alquicira{-}Hern{\'{a}}ndez and
Ruth Mart{\'{\i}}nez{-}Adame and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Juan Miranda{-}R{\'{\i}}os and
Araceli M. Huerta and
Alfredo Mendoza{-}Vargas and
Leonardo Collado{-}Torres and
Blanca Taboada and
Leticia Vega{-}Alvarado and
Maricela Olvera and
Leticia Olvera and
Ricardo Grande and
Enrique Morett and
Julio Collado{-}Vides},
title = {RegulonDB version 7.0: transcriptional regulation of \emph{Escherichia
coli} {K-12} integrated within genetic sensory response units (Gensor
Units)},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {98--105},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1110},
doi = {10.1093/NAR/GKQ1110},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Gama-CastroSPSMSJWGLPAMMAMBMHMCTVOOGMC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Gama-CastroJPSPCSMMSBAPMMMHTC08,
author = {Socorro Gama{-}Castro and
Ver{\'{o}}nica Jim{\'{e}}nez{-}Jacinto and
Mart{\'{\i}}n Peralta{-}Gil and
Alberto Santos{-}Zavaleta and
M{\'{o}}nica I. Pe{\~{n}}aloza{-}Sp{\'{\i}}nola and
Bruno Contreras{-}Moreira and
Juan Segura{-}Salazar and
Luis Mu{\~{n}}iz{-}Rascado and
Irma Mart{\'{\i}}nez{-}Flores and
Heladia Salgado and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Cei Abreu{-}Goodger and
Carlos Rodr{\'{\i}}guez Penagos and
Juan Miranda{-}R{\'{\i}}os and
Enrique Morett and
Enrique Merino and
Araceli M. Huerta and
Luis Trevi{\~{n}}o{-}Quintanilla and
Julio Collado{-}Vides},
title = {RegulonDB (version 6.0): gene regulation model of \emph{Escherichia
coli} {K-12} beyond transcription, active (experimental) annotated
promoters and Textpresso navigation},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {120--124},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm994},
doi = {10.1093/NAR/GKM994},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Gama-CastroJPSPCSMMSBAPMMMHTC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PenagosSMC07,
author = {Carlos Rodr{\'{\i}}guez Penagos and
Heladia Salgado and
Irma Mart{\'{\i}}nez{-}Flores and
Julio Collado{-}Vides},
title = {Automatic reconstruction of a bacterial regulatory network using Natural
Language Processing},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-293},
doi = {10.1186/1471-2105-8-293},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PenagosSMC07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cicling/PenagosSMC07,
author = {Carlos Rodr{\'{\i}}guez Penagos and
Heladia Salgado and
Irma Mart{\'{\i}}nez{-}Flores and
Julio Collado{-}Vides},
editor = {Alexander F. Gelbukh},
title = {NLP-Based Curation of Bacterial Regulatory Networks},
booktitle = {Computational Linguistics and Intelligent Text Processing, 8th International
Conference, CICLing 2007, Mexico City, Mexico, February 18-24, 2007},
series = {Lecture Notes in Computer Science},
volume = {4394},
pages = {575--586},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-70939-8\_51},
doi = {10.1007/978-3-540-70939-8\_51},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cicling/PenagosSMC07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SalgadoSGPPMKC06,
author = {Heladia Salgado and
Alberto Santos{-}Zavaleta and
Socorro Gama{-}Castro and
Mart{\'{\i}}n Peralta{-}Gil and
M{\'{o}}nica I. Pe{\~{n}}aloza{-}Sp{\'{\i}}nola and
Agustino Mart{\'{\i}}nez{-}Antonio and
Peter D. Karp and
Julio Collado{-}Vides},
title = {The comprehensive updated regulatory network of \emph{Escherichia
coli }K-12},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {5},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-5},
doi = {10.1186/1471-2105-7-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SalgadoSGPPMKC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SalgadoGPDSSMJBSMC06,
author = {Heladia Salgado and
Socorro Gama{-}Castro and
Mart{\'{\i}}n Peralta{-}Gil and
Edgar D{\'{\i}}az{-}Peredo and
Fabiola S{\'{a}}nchez{-}Solano and
Alberto Santos{-}Zavaleta and
Irma Mart{\'{\i}}nez{-}Flores and
Ver{\'{o}}nica Jim{\'{e}}nez{-}Jacinto and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Juan Segura{-}Salazar and
Agustino Mart{\'{\i}}nez{-}Antonio and
Julio Collado{-}Vides},
title = {RegulonDB (version 5.0): \emph{Escherichia coli} {K-12} transcriptional
regulatory network, operon organization, and growth conditions},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Database-Issue},
pages = {394--397},
year = {2006},
url = {https://doi.org/10.1093/nar/gkj156},
doi = {10.1093/NAR/GKJ156},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SalgadoGPDSSMJBSMC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SalgadoGMDSPGJSBC04,
author = {Heladia Salgado and
Socorro Gama{-}Castro and
Agustino Mart{\'{\i}}nez{-}Antonio and
Edgar D{\'{\i}}az{-}Peredo and
Fabiola S{\'{a}}nchez{-}Solano and
Mart{\'{\i}}n Peralta{-}Gil and
Delfino Garcia{-}Alonso and
Ver{\'{o}}nica Jim{\'{e}}nez{-}Jacinto and
Alberto Santos{-}Zavaleta and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Julio Collado{-}Vides},
title = {RegulonDB (version 4.0): transcriptional regulation, operon organization
and growth conditions in Escherichia coli {K-12}},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Database-Issue},
pages = {303--306},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh140},
doi = {10.1093/NAR/GKH140},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SalgadoGMDSPGJSBC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/Collado-VidesMPSHGRCBMGSBDSM02,
author = {Julio Collado{-}Vides and
Gabriel Moreno{-}Hagelsieb and
Ernesto P{\'{e}}rez{-}Rueda and
Heladia Salgado and
Araceli M. Huerta and
Rosa Mar{\'{\i}}a Guti{\'{e}}rrez and
David A. Rosenblueth and
Andr{\'{e}}s Christen and
Esperanza Ben{\'{\i}}tez{-}Bell{\'{o}}n and
Arturo Medrano{-}Soto and
Socorro Gama{-}Castro and
Alberto Santos{-}Zavaleta and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Edgar D{\'{\i}}az{-}Peredo and
Fabiola S{\'{a}}nchez{-}Solano and
Dulce Mar{\'{\i}}a Mill{\'{a}}},
editor = {Julio Collado{-}Vides and
Ralf Hofest{\"{a}}dt},
title = {Genomics of Gene Regulation: The View from Escherichia coli},
booktitle = {Gene Regulations and Metabolism - Postgenomic Computational Approaches},
pages = {103--128},
publisher = {{MIT} Press},
year = {2002},
timestamp = {Tue, 28 Aug 2007 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/Collado-VidesMPSHGRCBMGSBDSM02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SalgadoSGMDSPBC01,
author = {Heladia Salgado and
Alberto Santos{-}Zavaleta and
Socorro Gama{-}Castro and
Dulce Mill{\'{a}}n{-}Z{\'{a}}rate and
Edgar D{\'{\i}}az{-}Peredo and
Fabiola S{\'{a}}nchez{-}Solano and
Ernesto P{\'{e}}rez{-}Rueda and
C{\'{e}}sar Bonavides{-}Mart{\'{\i}}nez and
Julio Collado{-}Vides},
title = {RegulonDB (version 3.2): transcriptional regulation and operon organization
in Escherichia coli {K-12}},
journal = {Nucleic Acids Res.},
volume = {29},
number = {1},
pages = {72--74},
year = {2001},
url = {https://doi.org/10.1093/nar/29.1.72},
doi = {10.1093/NAR/29.1.72},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SalgadoSGMDSPBC01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SalgadoSGMBC00,
author = {Heladia Salgado and
Alberto Santos{-}Zavaleta and
Socorro Gama{-}Castro and
Dulce Mill{\'{a}}n{-}Z{\'{a}}rate and
Frederick R. Blattner and
Julio Collado{-}Vides},
title = {RegulonDB (version 3.0): transcriptional regulation and operon organization
in Escherichia coli {K-12}},
journal = {Nucleic Acids Res.},
volume = {28},
number = {1},
pages = {65--67},
year = {2000},
url = {https://doi.org/10.1093/nar/28.1.65},
doi = {10.1093/NAR/28.1.65},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SalgadoSGMBC00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SalgadoSGHDC99,
author = {Heladia Salgado and
Alberto Santos{-}Zavaleta and
Ulises Garza{-}Ramos and
Jacques van Helden and
Edgar D{\'{\i}}az{-}Peredo and
Julio Collado{-}Vides},
title = {RegulonDB (version 2.0): a database on transcriptional regulation
in Escherichia coli},
journal = {Nucleic Acids Res.},
volume = {27},
number = {1},
pages = {59--60},
year = {1999},
url = {https://doi.org/10.1093/nar/27.1.59},
doi = {10.1093/NAR/27.1.59},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SalgadoSGHDC99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ThieffrySHC98,
author = {Denis Thieffry and
Heladia Salgado and
Araceli M. Huerta and
Julio Collado{-}Vides},
title = {Prediction of transcriptional regulatory sites in the complete genome
sequence of Escherichia coli {K-12}},
journal = {Bioinform.},
volume = {14},
number = {5},
pages = {391--400},
year = {1998},
url = {https://doi.org/10.1093/bioinformatics/14.5.391},
doi = {10.1093/BIOINFORMATICS/14.5.391},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ThieffrySHC98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HuertaSTC98,
author = {Araceli M. Huerta and
Heladia Salgado and
Denis Thieffry and
Julio Collado{-}Vides},
title = {RegulonDB: a database on transcriptional regulation in Escherichia
coli},
journal = {Nucleic Acids Res.},
volume = {26},
number = {1},
pages = {55--59},
year = {1998},
url = {https://doi.org/10.1093/nar/26.1.55},
doi = {10.1093/NAR/26.1.55},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HuertaSTC98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RosenbluethTHSC96,
author = {David A. Rosenblueth and
Denis Thieffry and
Araceli M. Huerta and
Heladia Salgado and
Julio Collado{-}Vides},
title = {Syntactic recognition of regulatory regions in Escherichia coli},
journal = {Comput. Appl. Biosci.},
volume = {12},
number = {5},
pages = {415--422},
year = {1996},
url = {https://doi.org/10.1093/bioinformatics/12.5.415},
doi = {10.1093/BIOINFORMATICS/12.5.415},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RosenbluethTHSC96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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