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ORCIDBibTeX records: Daniel L. Rubin
@article{DBLP:journals/npjdm/SaabTTLRR24,
author = {Khaled Saab and
Siyi Tang and
Mohamed Taha and
Christopher Lee{-}Messer and
Christopher R{\'{e}} and
Daniel L. Rubin},
title = {Towards trustworthy seizure onset detection using workflow notes},
journal = {npj Digit. Medicine},
volume = {7},
number = {1},
year = {2024},
url = {https://doi.org/10.1038/s41746-024-01008-9},
doi = {10.1038/S41746-024-01008-9},
timestamp = {Sat, 08 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/npjdm/SaabTTLRR24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/patterns/PatiKVELQWLWSCSRKB24,
author = {Sarthak Pati and
Sourav Kumar and
Amokh Varma and
Brandon Edwards and
Charles Lu and
Liangqiong Qu and
Justin J. Wang and
Anantharaman Lakshminarayanan and
Shih{-}han Wang and
Micah J. Sheller and
Ken Chang and
Praveer Singh and
Daniel L. Rubin and
Jayashree Kalpathy{-}Cramer and
Spyridon Bakas},
title = {Privacy preservation for federated learning in health care},
journal = {Patterns},
volume = {5},
number = {7},
pages = {100974},
year = {2024},
url = {https://doi.org/10.1016/j.patter.2024.100974},
doi = {10.1016/J.PATTER.2024.100974},
timestamp = {Thu, 22 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/patterns/PatiKVELQWLWSCSRKB24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pr/JiMLRC24,
author = {Zexuan Ji and
Xiao Ma and
Theodore Leng and
Daniel L. Rubin and
Qiang Chen},
title = {Mirrored X-Net: Joint classification and contrastive learning for
weakly supervised {GA} segmentation in {SD-OCT}},
journal = {Pattern Recognit.},
volume = {153},
pages = {110507},
year = {2024},
url = {https://doi.org/10.1016/j.patcog.2024.110507},
doi = {10.1016/J.PATCOG.2024.110507},
timestamp = {Fri, 19 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/pr/JiMLRC24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tai/BhaskharRL24,
author = {Nandita Bhaskhar and
Daniel L. Rubin and
Christopher Lee{-}Messer},
title = {An Explainable and Actionable Mistrust Scoring Framework for Model
Monitoring},
journal = {{IEEE} Trans. Artif. Intell.},
volume = {5},
number = {4},
pages = {1473--1485},
year = {2024},
url = {https://doi.org/10.1109/TAI.2023.3272876},
doi = {10.1109/TAI.2023.3272876},
timestamp = {Sat, 27 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tai/BhaskharRL24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/EminagaASLBLR23,
author = {Okyaz Eminaga and
Mahmoud Abbas and
Jeanne Shen and
Mark A. Laurie and
James D. Brooks and
Joseph C. Liao and
Daniel L. Rubin},
title = {PlexusNet: {A} neural network architectural concept for medical image
classification},
journal = {Comput. Biol. Medicine},
volume = {154},
pages = {106594},
year = {2023},
url = {https://doi.org/10.1016/j.compbiomed.2023.106594},
doi = {10.1016/J.COMPBIOMED.2023.106594},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cbm/EminagaASLBLR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/BhaskharICR23,
author = {Nandita Bhaskhar and
Wui Ip and
Jonathan H. Chen and
Daniel L. Rubin},
title = {Clinical outcome prediction using observational supervision with electronic
health records and audit logs},
journal = {J. Biomed. Informatics},
volume = {147},
pages = {104522},
year = {2023},
url = {https://doi.org/10.1016/j.jbi.2023.104522},
doi = {10.1016/J.JBI.2023.104522},
timestamp = {Sun, 10 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/BhaskharICR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/TangTDSERPB23,
author = {Siyi Tang and
Amara Tariq and
Jared A. Dunnmon and
Umesh Sharma and
Praneetha Elugunti and
Daniel L. Rubin and
Bhavik N. Patel and
Imon Banerjee},
title = {Predicting 30-Day All-Cause Hospital Readmission Using Multimodal
Spatiotemporal Graph Neural Networks},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {27},
number = {4},
pages = {2071--2082},
year = {2023},
url = {https://doi.org/10.1109/JBHI.2023.3236888},
doi = {10.1109/JBHI.2023.3236888},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/titb/TangTDSERPB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/YanQWHSR0Z23,
author = {Rui Yan and
Liangqiong Qu and
Qingyue Wei and
Shih{-}Cheng Huang and
Liyue Shen and
Daniel L. Rubin and
Lei Xing and
Yuyin Zhou},
title = {Label-Efficient Self-Supervised Federated Learning for Tackling Data
Heterogeneity in Medical Imaging},
journal = {{IEEE} Trans. Medical Imaging},
volume = {42},
number = {7},
pages = {1932--1943},
year = {2023},
url = {https://doi.org/10.1109/TMI.2022.3233574},
doi = {10.1109/TMI.2022.3233574},
timestamp = {Fri, 21 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/YanQWHSR0Z23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/chil/TangDQSBLR23,
author = {Siyi Tang and
Jared A. Dunnmon and
Liangqiong Qu and
Khaled Kamal Saab and
Tina Baykaner and
Christopher Lee{-}Messer and
Daniel L. Rubin},
editor = {Bobak J. Mortazavi and
Tasmie Sarker and
Andrew Beam and
Joyce C. Ho},
title = {Modeling Multivariate Biosignals With Graph Neural Networks and Structured
State Space Models},
booktitle = {Conference on Health, Inference, and Learning, {CHIL} 2023, Broad
Institute of {MIT} and Harvard (Merkin Building), 415 Main Street,
Cambridge, MA, {USA}},
series = {Proceedings of Machine Learning Research},
volume = {209},
pages = {50--71},
publisher = {{PMLR}},
year = {2023},
url = {https://proceedings.mlr.press/v209/tang23a.html},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/chil/TangDQSBLR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midl/SluijsBRLC23,
author = {Rogier van der Sluijs and
Nandita Bhaskhar and
Daniel L. Rubin and
Curtis P. Langlotz and
Akshay S. Chaudhari},
editor = {Ipek Oguz and
Jack H. Noble and
Xiaoxiao Li and
Martin Styner and
Christian Baumgartner and
Mirabela Rusu and
Tobias Heimann and
Despina Kontos and
Bennett A. Landman and
Benoit M. Dawant},
title = {Exploring Image Augmentations for Siamese Representation Learning
with Chest X-Rays},
booktitle = {Medical Imaging with Deep Learning, {MIDL} 2023, 10-12 July 2023,
Nashville, TN, {USA}},
series = {Proceedings of Machine Learning Research},
volume = {227},
pages = {444--467},
publisher = {{PMLR}},
year = {2023},
url = {https://proceedings.mlr.press/v227/sluijs24a.html},
timestamp = {Tue, 20 Feb 2024 17:19:52 +0100},
biburl = {https://dblp.org/rec/conf/midl/SluijsBRLC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ner/TariqTSCNRTGPB23,
author = {Amara Tariq and
Siyi Tang and
Hifza Sakhi and
Leo Anthony Celi and
Janice M. Newsome and
Daniel L. Rubin and
Hari Trivedi and
Judy Gichoya and
Bhavik N. Patel and
Imon Banerjee},
title = {Graph-Based Fusion of Imaging and Non-Imaging Data for Disease Trajectory
Prediction},
booktitle = {11th International {IEEE/EMBS} Conference on Neural Engineering, {NER}
2023, Baltimore, MD, USA, April 24-27, 2023},
pages = {1--4},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/NER52421.2023.10123892},
doi = {10.1109/NER52421.2023.10123892},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ner/TariqTSCNRTGPB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/ChavesBADRLLC23,
author = {Juanma Zambrano Chaves and
Nandita Bhaskhar and
Maayane Attias and
Jean{-}Benoit Delbrouck and
Daniel L. Rubin and
Andreas M. Loening and
Curtis P. Langlotz and
Akshay Chaudhari},
editor = {Alice Oh and
Tristan Naumann and
Amir Globerson and
Kate Saenko and
Moritz Hardt and
Sergey Levine},
title = {RaLEs: a Benchmark for Radiology Language Evaluations},
booktitle = {Advances in Neural Information Processing Systems 36: Annual Conference
on Neural Information Processing Systems 2023, NeurIPS 2023, New Orleans,
LA, USA, December 10 - 16, 2023},
year = {2023},
url = {http://papers.nips.cc/paper\_files/paper/2023/hash/eb5683d06bdef51ed4dff644908eef4b-Abstract-Datasets\_and\_Benchmarks.html},
timestamp = {Fri, 01 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/nips/ChavesBADRLLC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wacv/MirzazadehDPMZLR23,
author = {Ali Mirzazadeh and
Florian Dubost and
Maxwell Pike and
Krish Maniar and
Max Zuo and
Christopher Lee{-}Messer and
Daniel L. Rubin},
title = {{ATCON:} Attention Consistency for Vision Models},
booktitle = {{IEEE/CVF} Winter Conference on Applications of Computer Vision, {WACV}
2023, Waikoloa, HI, USA, January 2-7, 2023},
pages = {1880--1889},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/WACV56688.2023.00192},
doi = {10.1109/WACV56688.2023.00192},
timestamp = {Wed, 12 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wacv/MirzazadehDPMZLR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wacv/DubostHTBLR23,
author = {Florian Dubost and
Erin Hong and
Siyi Tang and
Nandita Bhaskhar and
Christopher Lee{-}Messer and
Daniel L. Rubin},
title = {Semi-Supervised Learning for Sparsely-Labeled Sequential Data: Application
to Healthcare Video Processing},
booktitle = {{IEEE/CVF} Winter Conference on Applications of Computer Vision, {WACV}
2023, Waikoloa, HI, USA, January 2-7, 2023},
pages = {1890--1899},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/WACV56688.2023.00193},
doi = {10.1109/WACV56688.2023.00193},
timestamp = {Tue, 14 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wacv/DubostHTBLR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2301-12636,
author = {Rogier van der Sluijs and
Nandita Bhaskhar and
Daniel L. Rubin and
Curtis P. Langlotz and
Akshay Chaudhari},
title = {Exploring Image Augmentations for Siamese Representation Learning
with Chest X-Rays},
journal = {CoRR},
volume = {abs/2301.12636},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2301.12636},
doi = {10.48550/ARXIV.2301.12636},
eprinttype = {arXiv},
eprint = {2301.12636},
timestamp = {Tue, 31 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2301-12636.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2306-08728,
author = {Khaled Saab and
Siyi Tang and
Mohamed Taha and
Christopher Lee{-}Messer and
Christopher R{\'{e}} and
Daniel L. Rubin},
title = {Towards trustworthy seizure onset detection using workflow notes},
journal = {CoRR},
volume = {abs/2306.08728},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2306.08728},
doi = {10.48550/ARXIV.2306.08728},
eprinttype = {arXiv},
eprint = {2306.08728},
timestamp = {Thu, 22 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2306-08728.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/TariqKBLDRGB22,
author = {Amara Tariq and
Omar Kallas and
Patricia C. Balthazar and
Scott Jeffery Lee and
Terry Desser and
Daniel L. Rubin and
Judy Wawira Gichoya and
Imon Banerjee},
title = {Transfer language space with similar domain adaptation: a case study
with hepatocellular carcinoma},
journal = {J. Biomed. Semant.},
volume = {13},
number = {1},
pages = {8},
year = {2022},
url = {https://doi.org/10.1186/s13326-022-00262-8},
doi = {10.1186/S13326-022-00262-8},
timestamp = {Fri, 04 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/TariqKBLDRGB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fini/OttesenYTILSJHERBZG22,
author = {Jon Andr{\'{e}} Ottesen and
Darvin Yi and
Elizabeth Tong and
Michael Iv and
Anna Latysheva and
Cathrine Saxhaug and
Kari Dolven Jacobsen and
{\AA}slaug Helland and
Kyrre Eeg Emblem and
Daniel L. Rubin and
Atle Bj{\o}rnerud and
Greg Zaharchuk and
Endre Gr{\o}vik},
title = {2.5D and 3D segmentation of brain metastases with deep learning on
multinational {MRI} data},
journal = {Frontiers Neuroinformatics},
volume = {16},
year = {2022},
url = {https://doi.org/10.3389/fninf.2022.1056068},
doi = {10.3389/FNINF.2022.1056068},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fini/OttesenYTILSJHERBZG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/SanyalRB22,
author = {Josh Sanyal and
Daniel L. Rubin and
Imon Banerjee},
title = {A weakly supervised model for the automated detection of adverse events
using clinical notes},
journal = {J. Biomed. Informatics},
volume = {126},
pages = {103969},
year = {2022},
url = {https://doi.org/10.1016/j.jbi.2021.103969},
doi = {10.1016/J.JBI.2021.103969},
timestamp = {Wed, 31 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/SanyalRB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/HaDBFHLBRRSWWBH22,
author = {Audrey Ha and
Bao H. Do and
Adam L. Bartret and
Charles X. Fang and
Albert Hsiao and
Amelie M. Lutz and
Imon Banerjee and
Geoffrey M. Riley and
Daniel L. Rubin and
Kathryn J. Stevens and
Erin Wang and
Shannon Wang and
Christopher F. Beaulieu and
Brian Hurt},
title = {Automating Scoliosis Measurements in Radiographic Studies with Machine
Learning: Comparing Artificial Intelligence and Clinical Reports},
journal = {J. Digit. Imaging},
volume = {35},
number = {3},
pages = {524--533},
year = {2022},
url = {https://doi.org/10.1007/s10278-022-00595-x},
doi = {10.1007/S10278-022-00595-X},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/HaDBFHLBRRSWWBH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/natmi/BaiWMXGFYMYBSZH22,
author = {Xiang Bai and
Hanchen Wang and
Liya Ma and
Yongchao Xu and
Jiefeng Gan and
Ziwei Fan and
Fan Yang and
Ke Ma and
Jiehua Yang and
Song Bai and
Chang Shu and
Xinyu Zou and
Renhao Huang and
Changzheng Zhang and
Xiaowu Liu and
Dandan Tu and
Chuou Xu and
Wenqing Zhang and
Xi Wang and
Anguo Chen and
Yu Zeng and
Dehua Yang and
Ming{-}Wei Wang and
Nagaraj Holalkere and
Neil J. Halin and
Ihab R. Kamel and
Jia Wu and
Xuehua Peng and
Xiang Wang and
Jianbo Shao and
Pattanasak Mongkolwat and
Jianjun Zhang and
Weiyang Liu and
Michael Roberts and
Zhongzhao Teng and
Lucian Beer and
Lorena Escudero Sanchez and
Evis Sala and
Daniel L. Rubin and
Adrian Weller and
Joan Lasenby and
Chuansheng Zheng and
Jianming Wang and
Zhen Li and
Carola Sch{\"{o}}nlieb and
Tian Xia},
title = {Author Correction: Advancing {COVID-19} diagnosis with privacy-preserving
collaboration in artificial intelligence},
journal = {Nat. Mach. Intell.},
volume = {4},
number = {4},
pages = {413},
year = {2022},
url = {https://doi.org/10.1038/s42256-022-00485-5},
doi = {10.1038/S42256-022-00485-5},
timestamp = {Mon, 29 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/natmi/BaiWMXGFYMYBSZH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/ZhangQSKR22,
author = {Miao Zhang and
Liangqiong Qu and
Praveer Singh and
Jayashree Kalpathy{-}Cramer and
Daniel L. Rubin},
title = {SplitAVG: {A} Heterogeneity-Aware Federated Deep Learning Method for
Medical Imaging},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {26},
number = {9},
pages = {4635--4644},
year = {2022},
url = {https://doi.org/10.1109/JBHI.2022.3185956},
doi = {10.1109/JBHI.2022.3185956},
timestamp = {Thu, 22 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/titb/ZhangQSKR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/TariqTSCNRTGPB22,
author = {Amara Tariq and
Siyi Tang and
Hifza Sakhi and
Leo Anthony Celi and
Janice M. Newsome and
Daniel L. Rubin and
Hari Trivedi and
Judy Gichoya and
Bhavik N. Patel and
Imon Banerjee},
title = {Graph-based Fusion Modeling and Explanation for Disease Trajectory
Prediction},
booktitle = {{AMIA} 2022, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 5-9, 2022},
publisher = {{AMIA}},
year = {2022},
url = {https://knowledge.amia.org/76677-amia-1.4637602/f006-1.4642154/f006-1.4642155/212-1.4642225/79-1.4642222},
timestamp = {Wed, 17 Apr 2024 11:46:45 +0200},
biburl = {https://dblp.org/rec/conf/amia/TariqTSCNRTGPB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/QuZLXW00R22,
author = {Liangqiong Qu and
Yuyin Zhou and
Paul Pu Liang and
Yingda Xia and
Feifei Wang and
Ehsan Adeli and
Li Fei{-}Fei and
Daniel L. Rubin},
title = {Rethinking Architecture Design for Tackling Data Heterogeneity in
Federated Learning},
booktitle = {{IEEE/CVF} Conference on Computer Vision and Pattern Recognition,
{CVPR} 2022, New Orleans, LA, USA, June 18-24, 2022},
pages = {10051--10061},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/CVPR52688.2022.00982},
doi = {10.1109/CVPR52688.2022.00982},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cvpr/QuZLXW00R22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccv/HoogiWGR22,
author = {Assaf Hoogi and
Brian Wilcox and
Yachee Gupta and
Daniel L. Rubin},
editor = {Leonid Karlinsky and
Tomer Michaeli and
Ko Nishino},
title = {Self-attention Capsule Network for Tissue Classification in Case of
Challenging Medical Image Statistics},
booktitle = {Computer Vision - {ECCV} 2022 Workshops - Tel Aviv, Israel, October
23-27, 2022, Proceedings, Part {III}},
series = {Lecture Notes in Computer Science},
volume = {13803},
pages = {219--235},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-25066-8\_10},
doi = {10.1007/978-3-031-25066-8\_10},
timestamp = {Sat, 25 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eccv/HoogiWGR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclr/TangDSZHDRL22,
author = {Siyi Tang and
Jared Dunnmon and
Khaled Kamal Saab and
Xuan Zhang and
Qianying Huang and
Florian Dubost and
Daniel L. Rubin and
Christopher Lee{-}Messer},
title = {Self-Supervised Graph Neural Networks for Improved Electroencephalographic
Seizure Analysis},
booktitle = {The Tenth International Conference on Learning Representations, {ICLR}
2022, Virtual Event, April 25-29, 2022},
publisher = {OpenReview.net},
year = {2022},
url = {https://openreview.net/forum?id=k9bx1EfHI\_-},
timestamp = {Wed, 12 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iclr/TangDSZHDRL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/BlankemeierGCMS22,
author = {Louis Blankemeier and
Isabel Gallegos and
Juan Manuel Zambrano Chaves and
David J. Maron and
Alexander T. Sandhu and
F{\'{a}}tima Rodriguez and
Daniel L. Rubin and
Bhavik N. Patel and
Marc H. Willis and
Robert D. Boutin and
Akshay S. Chaudhari},
editor = {Linwei Wang and
Qi Dou and
P. Thomas Fletcher and
Stefanie Speidel and
Shuo Li},
title = {Opportunistic Incidence Prediction of Multiple Chronic Diseases from
Abdominal {CT} Imaging Using Multi-task Learning},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2022 - 25th International Conference, Singapore, September 18-22,
2022, Proceedings, Part {VII}},
series = {Lecture Notes in Computer Science},
volume = {13437},
pages = {309--318},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-16449-1\_30},
doi = {10.1007/978-3-031-16449-1\_30},
timestamp = {Tue, 20 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/BlankemeierGCMS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mlhc/SaabHCZRR22,
author = {Khaled Saab and
Sarah M. Hooper and
Mayee F. Chen and
Michael Zhang and
Daniel L. Rubin and
Christopher R{\'{e}}},
editor = {Zachary C. Lipton and
Rajesh Ranganath and
Mark P. Sendak and
Michael W. Sjoding and
Serena Yeung},
title = {Reducing Reliance on Spurious Features in Medical Image Classification
with Spatial Specificity},
booktitle = {Proceedings of the Machine Learning for Healthcare Conference, {MLHC}
2022, 5-6 August 2022, Durham, NC, {USA}},
series = {Proceedings of Machine Learning Research},
volume = {182},
pages = {760--784},
publisher = {{PMLR}},
year = {2022},
url = {https://proceedings.mlr.press/v182/saab22a.html},
timestamp = {Thu, 22 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/mlhc/SaabHCZRR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2202-13618,
author = {Alexander S. Berdichevsky and
Mor Peleg and
Daniel L. Rubin},
title = {Supervised Machine Learning Algorithm for Detecting Consistency between
Reported Findings and the Conclusions of Mammography Reports},
journal = {CoRR},
volume = {abs/2202.13618},
year = {2022},
url = {https://arxiv.org/abs/2202.13618},
eprinttype = {arXiv},
eprint = {2202.13618},
timestamp = {Thu, 03 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2202-13618.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2204-06766,
author = {Siyi Tang and
Amara Tariq and
Jared Dunnmon and
Umesh Sharma and
Praneetha Elugunti and
Daniel L. Rubin and
Bhavik N. Patel and
Imon Banerjee},
title = {Multimodal spatiotemporal graph neural networks for improved prediction
of 30-day all-cause hospital readmission},
journal = {CoRR},
volume = {abs/2204.06766},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2204.06766},
doi = {10.48550/ARXIV.2204.06766},
eprinttype = {arXiv},
eprint = {2204.06766},
timestamp = {Wed, 12 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2204-06766.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2205-04044,
author = {Yan{-}Ran Wang and
Liangqiong Qu and
Natasha Diba Sheybani and
Xiaolong Luo and
Jiangshan Wang and
Kristina Elizabeth Hawk and
Ashok Joseph Theruvath and
Sergios Gatidis and
Xuerong Xiao and
Allison Pribnow and
Daniel L. Rubin and
Heike E. Daldrup{-}Link},
title = {Masked Co-attentional Transformer reconstructs 100x ultra-fast/low-dose
whole-body {PET} from longitudinal images and anatomically guided
{MRI}},
journal = {CoRR},
volume = {abs/2205.04044},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2205.04044},
doi = {10.48550/ARXIV.2205.04044},
eprinttype = {arXiv},
eprint = {2205.04044},
timestamp = {Thu, 12 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2205-04044.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2205-08576,
author = {Rui Yan and
Liangqiong Qu and
Qingyue Wei and
Shih{-}Cheng Huang and
Liyue Shen and
Daniel L. Rubin and
Lei Xing and
Yuyin Zhou},
title = {Label-Efficient Self-Supervised Federated Learning for Tackling Data
Heterogeneity in Medical Imaging},
journal = {CoRR},
volume = {abs/2205.08576},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2205.08576},
doi = {10.48550/ARXIV.2205.08576},
eprinttype = {arXiv},
eprint = {2205.08576},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2205-08576.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2206-08794,
author = {Jupinder Parmar and
Khaled Saab and
Brian Pogatchnik and
Daniel L. Rubin and
Christopher R{\'{e}}},
title = {The Importance of Background Information for Out of Distribution Generalization},
journal = {CoRR},
volume = {abs/2206.08794},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2206.08794},
doi = {10.48550/ARXIV.2206.08794},
eprinttype = {arXiv},
eprint = {2206.08794},
timestamp = {Thu, 22 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2206-08794.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2207-11290,
author = {Nandita Bhaskhar and
Daniel L. Rubin and
Christopher Lee{-}Messer},
title = {{TRUST-LAPSE:} An Explainable {\&} Actionable Mistrust Scoring
Framework for Model Monitoring},
journal = {CoRR},
volume = {abs/2207.11290},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2207.11290},
doi = {10.48550/ARXIV.2207.11290},
eprinttype = {arXiv},
eprint = {2207.11290},
timestamp = {Mon, 01 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2207-11290.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2208-11563,
author = {Minhaj Nur Alam and
Rikiya Yamashita and
Vignav Ramesh and
Tejas Prabhune and
Jennifer I. Lim and
R. V. P. Chan and
Joelle A. Hallak and
Theodore Leng and
Daniel L. Rubin},
title = {Contrastive learning-based pretraining improves representation and
transferability of diabetic retinopathy classification models},
journal = {CoRR},
volume = {abs/2208.11563},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2208.11563},
doi = {10.48550/ARXIV.2208.11563},
eprinttype = {arXiv},
eprint = {2208.11563},
timestamp = {Mon, 29 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2208-11563.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2210-09705,
author = {Ali Mirzazadeh and
Florian Dubost and
Maxwell Pike and
Krish Maniar and
Max Zuo and
Christopher Lee{-}Messer and
Daniel L. Rubin},
title = {{ATCON:} Attention Consistency for Vision Models},
journal = {CoRR},
volume = {abs/2210.09705},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2210.09705},
doi = {10.48550/ARXIV.2210.09705},
eprinttype = {arXiv},
eprint = {2210.09705},
timestamp = {Wed, 12 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2210-09705.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2211-11176,
author = {Siyi Tang and
Jared A. Dunnmon and
Liangqiong Qu and
Khaled Kamal Saab and
Christopher Lee{-}Messer and
Daniel L. Rubin},
title = {Spatiotemporal Modeling of Multivariate Signals With Graph Neural
Networks and Structured State Space Models},
journal = {CoRR},
volume = {abs/2211.11176},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2211.11176},
doi = {10.48550/ARXIV.2211.11176},
eprinttype = {arXiv},
eprint = {2211.11176},
timestamp = {Thu, 24 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2211-11176.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/LeeDHTRR21,
author = {Rebecca Sawyer Lee and
Jared A. Dunnmon and
Ann He and
Siyi Tang and
Christopher R{\'{e}} and
Daniel L. Rubin},
title = {Comparison of segmentation-free and segmentation-dependent computer-aided
diagnosis of breast masses on a public mammography dataset},
journal = {J. Biomed. Informatics},
volume = {113},
pages = {103656},
year = {2021},
url = {https://doi.org/10.1016/j.jbi.2020.103656},
doi = {10.1016/J.JBI.2020.103656},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/LeeDHTRR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/ZhangZJNLRYC21,
author = {Yuhan Zhang and
Xiwei Zhang and
Zexuan Ji and
Sijie Niu and
Theodore Leng and
Daniel L. Rubin and
Songtao Yuan and
Qiang Chen},
title = {An integrated time adaptive geographic atrophy prediction model for
{SD-OCT} images},
journal = {Medical Image Anal.},
volume = {68},
pages = {101893},
year = {2021},
url = {https://doi.org/10.1016/j.media.2020.101893},
doi = {10.1016/J.MEDIA.2020.101893},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mia/ZhangZJNLRYC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/natmi/BaiWMXGFYMYBSZH21,
author = {Xiang Bai and
Hanchen Wang and
Liya Ma and
Yongchao Xu and
Jiefeng Gan and
Ziwei Fan and
Fan Yang and
Ke Ma and
Jiehua Yang and
Song Bai and
Chang Shu and
Xinyu Zou and
Renhao Huang and
Changzheng Zhang and
Xiaowu Liu and
Dandan Tu and
Chuou Xu and
Wenqing Zhang and
Xi Wang and
Anguo Chen and
Yu Zeng and
Dehua Yang and
Ming{-}Wei Wang and
Nagaraj Holalkere and
Neil J. Halin and
Ihab R. Kamel and
Jia Wu and
Xuehua Peng and
Xiang Wang and
Jianbo Shao and
Pattanasak Mongkolwat and
Jianjun Zhang and
Weiyang Liu and
Michael Roberts and
Zhongzhao Teng and
Lucian Beer and
Lorena Escudero Sanchez and
Evis Sala and
Daniel L. Rubin and
Adrian Weller and
Joan Lasenby and
Chuansheng Zheng and
Jianming Wang and
Zhen Li and
Carola Sch{\"{o}}nlieb and
Tian Xia},
title = {Advancing {COVID-19} diagnosis with privacy-preserving collaboration
in artificial intelligence},
journal = {Nat. Mach. Intell.},
volume = {3},
number = {12},
pages = {1081--1089},
year = {2021},
url = {https://doi.org/10.1038/s42256-021-00421-z},
doi = {10.1038/S42256-021-00421-Z},
timestamp = {Mon, 29 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/natmi/BaiWMXGFYMYBSZH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/GrovikYITNLSJHE21,
author = {Endre Gr{\o}vik and
Darvin Yi and
Michael Iv and
Elizabeth Tong and
Line Brennhaug Nilsen and
Anna Latysheva and
Cathrine Saxhaug and
Kari Dolven Jacobsen and
{\AA}slaug Helland and
Kyrre Eeg Emblem and
Daniel L. Rubin and
Greg Zaharchuk},
title = {Handling missing {MRI} sequences in deep learning segmentation of
brain metastases: a multicenter study},
journal = {npj Digit. Medicine},
volume = {4},
year = {2021},
url = {https://doi.org/10.1038/s41746-021-00398-4},
doi = {10.1038/S41746-021-00398-4},
timestamp = {Fri, 08 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/npjdm/GrovikYITNLSJHE21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/YamashitaLBSR21,
author = {Rikiya Yamashita and
Jin Long and
Snikitha Banda and
Jeanne Shen and
Daniel L. Rubin},
title = {Learning Domain-Agnostic Visual Representation for Computational Pathology
Using Medically-Irrelevant Style Transfer Augmentation},
journal = {{IEEE} Trans. Medical Imaging},
volume = {40},
number = {12},
pages = {3945--3954},
year = {2021},
url = {https://doi.org/10.1109/TMI.2021.3101985},
doi = {10.1109/TMI.2021.3101985},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/YamashitaLBSR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SantosKNRGB21,
author = {Thiago Santos and
Omar Kallas and
Janice M. Newsome and
Daniel L. Rubin and
Judy W. Gichoya and
Imon Banerjee},
title = {A Fusion {NLP} Model for the Inference of Standardized Thyroid Nodule
Malignancy Scores from Radiology Report Text},
booktitle = {{AMIA} 2021, American Medical Informatics Association Annual Symposium,
San Diego, CA, USA, October 30, 2021 - November 3, 2021},
publisher = {{AMIA}},
year = {2021},
url = {https://knowledge.amia.org/74229-amia-1.4622266/t003-1.4626466/t003-1.4626467/3576416-1.4626534/3577080-1.4626531},
timestamp = {Wed, 17 Apr 2024 11:46:53 +0200},
biburl = {https://dblp.org/rec/conf/amia/SantosKNRGB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/DelbrouckZR21,
author = {Jean{-}Benoit Delbrouck and
Cassie Zhang and
Daniel L. Rubin},
editor = {Dina Demner{-}Fushman and
Kevin Bretonnel Cohen and
Sophia Ananiadou and
Junichi Tsujii},
title = {{QIAI} at {MEDIQA} 2021: Multimodal Radiology Report Summarization},
booktitle = {Proceedings of the 20th Workshop on Biomedical Language Processing,
BioNLP@NAACL-HLT 2021, Online, June 11, 2021},
pages = {285--290},
publisher = {Association for Computational Linguistics},
year = {2021},
url = {https://doi.org/10.18653/v1/2021.bionlp-1.33},
doi = {10.18653/V1/2021.BIONLP-1.33},
timestamp = {Mon, 04 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/DelbrouckZR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ZhangDR21,
author = {Oliver Zhang and
Jean{-}Benoit Delbrouck and
Daniel L. Rubin},
editor = {Carole H. Sudre and
Roxane Licandro and
Christian F. Baumgartner and
Andrew Melbourne and
Adrian V. Dalca and
Jana Hutter and
Ryutaro Tanno and
Esra Abaci Turk and
Koen Van Leemput and
Jordina Torrents{-}Barrena and
William M. Wells III and
Christopher K. Macgowan},
title = {Out of Distribution Detection for Medical Images},
booktitle = {Uncertainty for Safe Utilization of Machine Learning in Medical Imaging,
and Perinatal Imaging, Placental and Preterm Image Analysis - 3rd
International Workshop, {UNSURE} 2021, and 6th International Workshop,
{PIPPI} 2021 Held in Conjunction with {MICCAI} 2021, Strasbourg, France,
October 1, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12959},
pages = {102--111},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-87735-4\_10},
doi = {10.1007/978-3-030-87735-4\_10},
timestamp = {Mon, 04 Oct 2021 16:09:19 +0200},
biburl = {https://dblp.org/rec/conf/miccai/ZhangDR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/SaabHSPPWDZRR21,
author = {Khaled Saab and
Sarah M. Hooper and
Nimit Sharad Sohoni and
Jupinder Parmar and
Brian Pogatchnik and
Sen Wu and
Jared A. Dunnmon and
Hongyang R. Zhang and
Daniel L. Rubin and
Christopher R{\'{e}}},
editor = {Marleen de Bruijne and
Philippe C. Cattin and
St{\'{e}}phane Cotin and
Nicolas Padoy and
Stefanie Speidel and
Yefeng Zheng and
Caroline Essert},
title = {Observational Supervision for Medical Image Classification Using Gaze
Data},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2021 - 24th International Conference, Strasbourg, France, September
27 - October 1, 2021, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {12902},
pages = {603--614},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-87196-3\_56},
doi = {10.1007/978-3-030-87196-3\_56},
timestamp = {Thu, 22 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/SaabHSPPWDZRR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2102-01678,
author = {Rikiya Yamashita and
Jin Long and
Snikitha Banda and
Jeanne Shen and
Daniel L. Rubin},
title = {Learning domain-agnostic visual representation for computational pathology
using medically-irrelevant style transfer augmentation},
journal = {CoRR},
volume = {abs/2102.01678},
year = {2021},
url = {https://arxiv.org/abs/2102.01678},
eprinttype = {arXiv},
eprint = {2102.01678},
timestamp = {Wed, 10 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2102-01678.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2103-13511,
author = {Sharut Gupta and
Praveer Singh and
Ken Chang and
Liangqiong Qu and
Mehak Aggarwal and
Nishanth Thumbavanam Arun and
Ashwin Vaswani and
Shruti Raghavan and
Vibha Agarwal and
Mishka Gidwani and
Katharina Hoebel and
Jay B. Patel and
Charles Lu and
Christopher P. Bridge and
Daniel L. Rubin and
Jayashree Kalpathy{-}Cramer},
title = {Addressing catastrophic forgetting for medical domain expansion},
journal = {CoRR},
volume = {abs/2103.13511},
year = {2021},
url = {https://arxiv.org/abs/2103.13511},
eprinttype = {arXiv},
eprint = {2103.13511},
timestamp = {Tue, 07 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2103-13511.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2104-08336,
author = {Siyi Tang and
Jared A. Dunnmon and
Khaled Saab and
Xuan Zhang and
Qianying Huang and
Florian Dubost and
Daniel L. Rubin and
Christopher Lee{-}Messer},
title = {Automated Seizure Detection and Seizure Type Classification From Electroencephalography
With a Graph Neural Network and Self-Supervised Pre-Training},
journal = {CoRR},
volume = {abs/2104.08336},
year = {2021},
url = {https://arxiv.org/abs/2104.08336},
eprinttype = {arXiv},
eprint = {2104.08336},
timestamp = {Thu, 22 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2104-08336.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2105-08147,
author = {Vignav Ramesh and
Blaine Rister and
Daniel L. Rubin},
title = {{COVID-19} Lung Lesion Segmentation Using a Sparsely Supervised Mask
{R-CNN} on Chest X-rays Automatically Computed from Volumetric CTs},
journal = {CoRR},
volume = {abs/2105.08147},
year = {2021},
url = {https://arxiv.org/abs/2105.08147},
eprinttype = {arXiv},
eprint = {2105.08147},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2105-08147.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-02100,
author = {Florian Dubost and
Khaled Kamal Saab and
Erin Hong and
Daniel Yang Fu and
Max Pike and
Siddharth Sharma and
Siyi Tang and
Nandita Bhaskhar and
Christopher Lee{-}Messer and
Daniel L. Rubin},
title = {Double Descent Optimization Pattern and Aliasing: Caveats of Noisy
Labels},
journal = {CoRR},
volume = {abs/2106.02100},
year = {2021},
url = {https://arxiv.org/abs/2106.02100},
eprinttype = {arXiv},
eprint = {2106.02100},
timestamp = {Thu, 10 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2106-02100.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-06047,
author = {Liangqiong Qu and
Yuyin Zhou and
Paul Pu Liang and
Yingda Xia and
Feifei Wang and
Li Fei{-}Fei and
Ehsan Adeli and
Daniel L. Rubin},
title = {Rethinking Architecture Design for Tackling Data Heterogeneity in
Federated Learning},
journal = {CoRR},
volume = {abs/2106.06047},
year = {2021},
url = {https://arxiv.org/abs/2106.06047},
eprinttype = {arXiv},
eprint = {2106.06047},
timestamp = {Fri, 18 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2106-06047.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-13208,
author = {Liangqiong Qu and
Niranjan Balachandar and
Miao Zhang and
Daniel L. Rubin},
title = {Handling Data Heterogeneity with Generative Replay in Collaborative
Learning for Medical Imaging},
journal = {CoRR},
volume = {abs/2106.13208},
year = {2021},
url = {https://arxiv.org/abs/2106.13208},
eprinttype = {arXiv},
eprint = {2106.13208},
timestamp = {Wed, 30 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2106-13208.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2107-02375,
author = {Miao Zhang and
Liangqiong Qu and
Praveer Singh and
Jayashree Kalpathy{-}Cramer and
Daniel L. Rubin},
title = {SplitAVG: {A} heterogeneity-aware federated deep learning method for
medical imaging},
journal = {CoRR},
volume = {abs/2107.02375},
year = {2021},
url = {https://arxiv.org/abs/2107.02375},
eprinttype = {arXiv},
eprint = {2107.02375},
timestamp = {Wed, 07 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2107-02375.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2107-08371,
author = {Liangqiong Qu and
Niranjan Balachandar and
Daniel L. Rubin},
title = {An Experimental Study of Data Heterogeneity in Federated Learning
Methods for Medical Imaging},
journal = {CoRR},
volume = {abs/2107.08371},
year = {2021},
url = {https://arxiv.org/abs/2107.08371},
eprinttype = {arXiv},
eprint = {2107.08371},
timestamp = {Thu, 22 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2107-08371.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2111-09461,
author = {Xiang Bai and
Hanchen Wang and
Liya Ma and
Yongchao Xu and
Jiefeng Gan and
Ziwei Fan and
Fan Yang and
Ke Ma and
Jiehua Yang and
Song Bai and
Chang Shu and
Xinyu Zou and
Renhao Huang and
Changzheng Zhang and
Xiaowu Liu and
Dandan Tu and
Chuou Xu and
Wenqing Zhang and
Xi Wang and
Anguo Chen and
Yu Zeng and
Dehua Yang and
Ming{-}Wei Wang and
Nagaraj Holalkere and
Neil J. Halin and
Ihab R. Kamel and
Jia Wu and
Xuehua Peng and
Xiang Wang and
Jianbo Shao and
Pattanasak Mongkolwat and
Jianjun Zhang and
Weiyang Liu and
Michael Roberts and
Zhongzhao Teng and
Lucian Beer and
Lorena Escudero Sanchez and
Evis Sala and
Daniel L. Rubin and
Adrian Weller and
Joan Lasenby and
Chuangsheng Zheng and
Jianming Wang and
Zhen Li and
Carola{-}Bibiane Sch{\"{o}}nlieb and
Tian Xia},
title = {Advancing {COVID-19} Diagnosis with Privacy-Preserving Collaboration
in Artificial Intelligence},
journal = {CoRR},
volume = {abs/2111.09461},
year = {2021},
url = {https://arxiv.org/abs/2111.09461},
eprinttype = {arXiv},
eprint = {2111.09461},
timestamp = {Mon, 29 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2111-09461.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2111-11665,
author = {Yuyin Zhou and
Shih{-}Cheng Huang and
Jason Alan Fries and
Alaa Youssef and
Timothy J. Amrhein and
Marcello Chang and
Imon Banerjee and
Daniel L. Rubin and
Lei Xing and
Nigam Shah and
Matthew P. Lungren},
title = {RadFusion: Benchmarking Performance and Fairness for Multimodal Pulmonary
Embolism Detection from {CT} and {EHR}},
journal = {CoRR},
volume = {abs/2111.11665},
year = {2021},
url = {https://arxiv.org/abs/2111.11665},
eprinttype = {arXiv},
eprint = {2111.11665},
timestamp = {Thu, 20 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2111-11665.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2111-14270,
author = {Siddharth Sharma and
Florian Dubost and
Christopher Lee{-}Messer and
Daniel L. Rubin},
title = {Automated Detection of Patients in Hospital Video Recordings},
journal = {CoRR},
volume = {abs/2111.14270},
year = {2021},
url = {https://arxiv.org/abs/2111.14270},
eprinttype = {arXiv},
eprint = {2111.14270},
timestamp = {Wed, 01 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2111-14270.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/BalachandarCKR20,
author = {Niranjan Balachandar and
Ken Chang and
Jayashree Kalpathy{-}Cramer and
Daniel L. Rubin},
title = {Accounting for data variability in multi-institutional distributed
deep learning for medical imaging},
journal = {J. Am. Medical Informatics Assoc.},
volume = {27},
number = {5},
pages = {700--708},
year = {2020},
url = {https://doi.org/10.1093/jamia/ocaa017},
doi = {10.1093/JAMIA/OCAA017},
timestamp = {Sun, 11 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/BalachandarCKR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/BalachandarCKR20a,
author = {Niranjan Balachandar and
Ken Chang and
Jayashree Kalpathy{-}Cramer and
Daniel L. Rubin},
title = {Corrigendum to: Accounting for data variability in multi-institutional
distributed deep learning for medical imaging},
journal = {J. Am. Medical Informatics Assoc.},
volume = {27},
number = {8},
pages = {1340},
year = {2020},
url = {https://doi.org/10.1093/jamia/ocaa118},
doi = {10.1093/JAMIA/OCAA118},
timestamp = {Sun, 11 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/BalachandarCKR20a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/CohnMASJAKSHR20,
author = {David M. Cohn and
Tarub S. Mabud and
Victoria A. Arendt and
Andre D. Souffrant and
Gyeong S. Jeon and
Xiao An and
William T. Kuo and
Daniel Y. Sze and
Lawrence V. Hofmann and
Daniel L. Rubin},
title = {Toward Data-Driven Learning Healthcare Systems in Interventional Radiology:
Implementation to Evaluate Venous Stent Patency},
journal = {J. Digit. Imaging},
volume = {33},
number = {1},
pages = {25--36},
year = {2020},
url = {https://doi.org/10.1007/s10278-019-00280-6},
doi = {10.1007/S10278-019-00280-6},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/CohnMASJAKSHR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/SwinburneMR20,
author = {Nathaniel C. Swinburne and
David S. Mendelson and
Daniel L. Rubin},
title = {Advancing Semantic Interoperability of Image Annotations: Automated
Conversion of Non-standard Image Annotations in a Commercial {PACS}
to the Annotation and Image Markup},
journal = {J. Digit. Imaging},
volume = {33},
number = {1},
pages = {49--53},
year = {2020},
url = {https://doi.org/10.1007/s10278-019-00191-6},
doi = {10.1007/S10278-019-00191-6},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/SwinburneMR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/LuqueMRM20,
author = {Edson F. Luque and
Nelson J. O. Miranda and
Daniel L. Rubin and
Dilvan A. Moreira},
title = {Automatic Staging of Cancer Tumors Using {AIM} Image Annotations and
Ontologies},
journal = {J. Digit. Imaging},
volume = {33},
number = {2},
pages = {287--303},
year = {2020},
url = {https://doi.org/10.1007/s10278-019-00251-x},
doi = {10.1007/S10278-019-00251-X},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jdi/LuqueMRM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/SaabDRRL20,
author = {Khaled Saab and
Jared Dunnmon and
Christopher R{\'{e}} and
Daniel L. Rubin and
Christopher Lee{-}Messer},
title = {Weak supervision as an efficient approach for automated seizure detection
in electroencephalography},
journal = {npj Digit. Medicine},
volume = {3},
year = {2020},
url = {https://doi.org/10.1038/s41746-020-0264-0},
doi = {10.1038/S41746-020-0264-0},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/npjdm/SaabDRRL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/patterns/DunnmonRSKMSGLL20,
author = {Jared A. Dunnmon and
Alexander J. Ratner and
Khaled Saab and
Nishith Khandwala and
Matthew Markert and
Hersh Sagreiya and
Roger E. Goldman and
Christopher Lee{-}Messer and
Matthew P. Lungren and
Daniel L. Rubin and
Christopher R{\'{e}}},
title = {Cross-Modal Data Programming Enables Rapid Medical Machine Learning},
journal = {Patterns},
volume = {1},
number = {2},
pages = {100019},
year = {2020},
url = {https://doi.org/10.1016/j.patter.2020.100019},
doi = {10.1016/J.PATTER.2020.100019},
timestamp = {Thu, 22 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/patterns/DunnmonRSKMSGLL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/HoogiMGDR20,
author = {Assaf Hoogi and
Arjun Mishra and
Francisco Gimenez and
Jeffrey Dong and
Daniel L. Rubin},
title = {Natural Language Generation Model for Mammography Reports Simulation},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {24},
number = {9},
pages = {2711--2717},
year = {2020},
url = {https://doi.org/10.1109/JBHI.2020.2980118},
doi = {10.1109/JBHI.2020.2980118},
timestamp = {Sun, 11 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/titb/HoogiMGDR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/MaJNLRC20,
author = {Xiao Ma and
Zexuan Ji and
Sijie Niu and
Theodore Leng and
Daniel L. Rubin and
Qiang Chen},
title = {{MS-CAM:} Multi-Scale Class Activation Maps for Weakly-Supervised
Segmentation of Geographic Atrophy Lesions in {SD-OCT} Images},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {24},
number = {12},
pages = {3443--3455},
year = {2020},
url = {https://doi.org/10.1109/JBHI.2020.2999588},
doi = {10.1109/JBHI.2020.2999588},
timestamp = {Wed, 08 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/titb/MaJNLRC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/ZengBGR20,
author = {Jiaming Zeng and
Imon Banerjee and
Michael Francis Gensheimer and
Daniel L. Rubin},
title = {Cancer Treatment Classification with Electronic Medical Health Records
(Student Abstract)},
booktitle = {The Thirty-Fourth {AAAI} Conference on Artificial Intelligence, {AAAI}
2020, The Thirty-Second Innovative Applications of Artificial Intelligence
Conference, {IAAI} 2020, The Tenth {AAAI} Symposium on Educational
Advances in Artificial Intelligence, {EAAI} 2020, New York, NY, USA,
February 7-12, 2020},
pages = {13981--13982},
publisher = {{AAAI} Press},
year = {2020},
url = {https://doi.org/10.1609/aaai.v34i10.7263},
doi = {10.1609/AAAI.V34I10.7263},
timestamp = {Fri, 08 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/aaai/ZengBGR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/RothCSNLGGQIBWB20,
author = {Holger R. Roth and
Ken Chang and
Praveer Singh and
Nir Neumark and
Wenqi Li and
Vikash Gupta and
Sharut Gupta and
Liangqiong Qu and
Alvin Ihsani and
Bernardo C. Bizzo and
Yuhong Wen and
Varun Buch and
Meesam Shah and
Felipe Kitamura and
Matheus Mendon{\c{c}}a and
Vitor Lavor and
Ahmed Harouni and
Colin Compas and
Jesse Tetreault and
Prerna Dogra and
Yan Cheng and
Selnur Erdal and
Richard D. White and
Behrooz Hashemian and
Thomas J. Schultz and
Miao Zhang and
Adam McCarthy and
B. Min Yun and
Elshaimaa Sharaf and
Katharina Viktoria Hoebel and
Jay B. Patel and
Bryan Chen and
Sean Ko and
Evan Leibovitz and
Etta D. Pisano and
Laura Coombs and
Daguang Xu and
Keith J. Dreyer and
Ittai Dayan and
Ram C. Naidu and
Mona Flores and
Daniel L. Rubin and
Jayashree Kalpathy{-}Cramer},
editor = {Shadi Albarqouni and
Spyridon Bakas and
Konstantinos Kamnitsas and
M. Jorge Cardoso and
Bennett A. Landman and
Wenqi Li and
Fausto Milletari and
Nicola Rieke and
Holger Roth and
Daguang Xu and
Ziyue Xu},
title = {Federated Learning for Breast Density Classification: {A} Real-World
Implementation},
booktitle = {Domain Adaptation and Representation Transfer, and Distributed and
Collaborative Learning - Second {MICCAI} Workshop, {DART} 2020, and
First {MICCAI} Workshop, {DCL} 2020, Held in Conjunction with {MICCAI}
2020, Lima, Peru, October 4-8, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12444},
pages = {181--191},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-60548-3\_18},
doi = {10.1007/978-3-030-60548-3\_18},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/RothCSNLGGQIBWB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midl/YiGITZR20,
author = {Darvin Yi and
Endre Gr{\o}vik and
Michael Iv and
Elizabeth Tong and
Greg Zaharchuk and
Daniel L. Rubin},
editor = {Tal Arbel and
Ismail Ben Ayed and
Marleen de Bruijne and
Maxime Descoteaux and
Herv{\'{e}} Lombaert and
Christopher Pal},
title = {Brain Metastasis Segmentation Network Trained with Robustness to Annotations
with Multiple False Negatives},
booktitle = {International Conference on Medical Imaging with Deep Learning, {MIDL}
2020, 6-8 July 2020, Montr{\'{e}}al, QC, Canada},
series = {Proceedings of Machine Learning Research},
volume = {121},
pages = {867--880},
publisher = {{PMLR}},
year = {2020},
url = {http://proceedings.mlr.press/v121/yi20a.html},
timestamp = {Fri, 27 Nov 2020 12:58:38 +0100},
biburl = {https://dblp.org/rec/conf/midl/YiGITZR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2001-09501,
author = {Darvin Yi and
Endre Gr{\o}vik and
Michael Iv and
Elizabeth Tong and
Greg Zaharchuk and
Daniel L. Rubin},
title = {Brain Metastasis Segmentation Network Trained with Robustness to Annotations
with Multiple False Negatives},
journal = {CoRR},
volume = {abs/2001.09501},
year = {2020},
url = {https://arxiv.org/abs/2001.09501},
eprinttype = {arXiv},
eprint = {2001.09501},
timestamp = {Sat, 23 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2001-09501.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2002-09809,
author = {Darvin Yi and
Endre Gr{\o}vik and
Michael Iv and
Elizabeth Tong and
Greg Zaharchuk and
Daniel L. Rubin},
title = {Random Bundle: Brain Metastases Segmentation Ensembling through Annotation
Randomization},
journal = {CoRR},
volume = {abs/2002.09809},
year = {2020},
url = {https://arxiv.org/abs/2002.09809},
eprinttype = {arXiv},
eprint = {2002.09809},
timestamp = {Tue, 03 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2002-09809.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2007-06192,
author = {Blaine Rister and
Daniel L. Rubin},
title = {Probabilistic bounds on data sensitivity in deep rectifier networks},
journal = {CoRR},
volume = {abs/2007.06192},
year = {2020},
url = {https://arxiv.org/abs/2007.06192},
eprinttype = {arXiv},
eprint = {2007.06192},
timestamp = {Tue, 21 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2007-06192.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2009-01871,
author = {Holger R. Roth and
Ken Chang and
Praveer Singh and
Nir Neumark and
Wenqi Li and
Vikash Gupta and
Sharut Gupta and
Liangqiong Qu and
Alvin Ihsani and
Bernardo C. Bizzo and
Yuhong Wen and
Varun Buch and
Meesam Shah and
Felipe Kitamura and
Matheus Mendon{\c{c}}a and
Vitor Lavor and
Ahmed Harouni and
Colin Compas and
Jesse Tetreault and
Prerna Dogra and
Yan Cheng and
Selnur Erdal and
Richard D. White and
Behrooz Hashemian and
Thomas J. Schultz and
Miao Zhang and
Adam McCarthy and
B. Min Yun and
Elshaimaa Sharaf and
Katharina Viktoria Hoebel and
Jay B. Patel and
Bryan Chen and
Sean Ko and
Evan Leibovitz and
Etta D. Pisano and
Laura Coombs and
Daguang Xu and
Keith J. Dreyer and
Ittai Dayan and
Ram C. Naidu and
Mona Flores and
Daniel L. Rubin and
Jayashree Kalpathy{-}Cramer},
title = {Federated Learning for Breast Density Classification: {A} Real-World
Implementation},
journal = {CoRR},
volume = {abs/2009.01871},
year = {2020},
url = {https://arxiv.org/abs/2009.01871},
eprinttype = {arXiv},
eprint = {2009.01871},
timestamp = {Fri, 11 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2009-01871.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2010-08006,
author = {Siyi Tang and
Amirata Ghorbani and
Rikiya Yamashita and
Sameer Rehman and
Jared A. Dunnmon and
James Y. Zou and
Daniel L. Rubin},
title = {Data Valuation for Medical Imaging Using Shapley Value: Application
on {A} Large-scale Chest X-ray Dataset},
journal = {CoRR},
volume = {abs/2010.08006},
year = {2020},
url = {https://arxiv.org/abs/2010.08006},
eprinttype = {arXiv},
eprint = {2010.08006},
timestamp = {Wed, 21 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2010-08006.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2011-08096,
author = {Sharut Gupta and
Praveer Singh and
Ken Chang and
Mehak Aggarwal and
Nishanth Thumbavanam Arun and
Liangqiong Qu and
Katharina Hoebel and
Jay B. Patel and
Mishka Gidwani and
Ashwin Vaswani and
Daniel L. Rubin and
Jayashree Kalpathy{-}Cramer},
title = {The unreasonable effectiveness of Batch-Norm statistics in addressing
catastrophic forgetting across medical institutions},
journal = {CoRR},
volume = {abs/2011.08096},
year = {2020},
url = {https://arxiv.org/abs/2011.08096},
eprinttype = {arXiv},
eprint = {2011.08096},
timestamp = {Wed, 18 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2011-08096.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2011-14101,
author = {Florian Dubost and
Erin Hong and
Daniel Y. Fu and
Nandita Bhaskhar and
Siyi Tang and
Khaled Saab and
Daniel L. Rubin and
Jared Dunnmon and
Christopher Lee{-}Messer},
title = {Let's Hope it Works! Inaccurate Supervision of Neural Networks with
Incorrect Labels: Application to Epilepsy},
journal = {CoRR},
volume = {abs/2011.14101},
year = {2020},
url = {https://arxiv.org/abs/2011.14101},
eprinttype = {arXiv},
eprint = {2011.14101},
timestamp = {Thu, 22 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2011-14101.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/artmed/BanerjeeLCHLMCA19,
author = {Imon Banerjee and
Yuan Ling and
Matthew C. Chen and
Sadid A. Hasan and
Curtis P. Langlotz and
Nathaniel Moradzadeh and
Brian E. Chapman and
Timothy Amrhein and
David A. Mong and
Daniel L. Rubin and
Oladimeji Farri and
Matthew P. Lungren},
title = {Comparative effectiveness of convolutional neural network {(CNN)}
and recurrent neural network {(RNN)} architectures for radiology text
report classification},
journal = {Artif. Intell. Medicine},
volume = {97},
pages = {79--88},
year = {2019},
url = {https://doi.org/10.1016/j.artmed.2018.11.004},
doi = {10.1016/J.ARTMED.2018.11.004},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/artmed/BanerjeeLCHLMCA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/XuNCJRC19,
author = {Rongbin Xu and
Sijie Niu and
Qiang Chen and
Zexuan Ji and
Daniel L. Rubin and
Yuehui Chen},
title = {Automated geographic atrophy segmentation for {SD-OCT} images based
on two-stage learning model},
journal = {Comput. Biol. Medicine},
volume = {105},
pages = {102--111},
year = {2019},
url = {https://doi.org/10.1016/j.compbiomed.2018.12.013},
doi = {10.1016/J.COMPBIOMED.2018.12.013},
timestamp = {Wed, 02 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cbm/XuNCJRC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmpb/WuCCJNLRP19,
author = {Menglin Wu and
Xinxin Cai and
Qiang Chen and
Zexuan Ji and
Sijie Niu and
Theodore Leng and
Daniel L. Rubin and
Hyunjin Park},
title = {Geographic atrophy segmentation in {SD-OCT} images using synthesized
fundus autofluorescence imaging},
journal = {Comput. Methods Programs Biomed.},
volume = {182},
year = {2019},
url = {https://doi.org/10.1016/j.cmpb.2019.105101},
doi = {10.1016/J.CMPB.2019.105101},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cmpb/WuCCJNLRP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/BanerjeeBASKR19,
author = {Imon Banerjee and
Selen Bozkurt and
Emel Alkim and
Hersh Sagreiya and
Allison W. Kurian and
Daniel L. Rubin},
title = {Automatic inference of {BI-RADS} final assessment categories from
narrative mammography report findings},
journal = {J. Biomed. Informatics},
volume = {92},
year = {2019},
url = {https://doi.org/10.1016/j.jbi.2019.103137},
doi = {10.1016/J.JBI.2019.103137},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/BanerjeeBASKR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/BozkurtABR19,
author = {Selen Bozkurt and
Emel Alkim and
Imon Banerjee and
Daniel L. Rubin},
title = {Automated Detection of Measurements and Their Descriptors in Radiology
Reports Using a Hybrid Natural Language Processing Algorithm},
journal = {J. Digit. Imaging},
volume = {32},
number = {4},
pages = {544--553},
year = {2019},
url = {https://doi.org/10.1007/s10278-019-00237-9},
doi = {10.1007/S10278-019-00237-9},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/BozkurtABR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/CahanHIR19,
author = {Eli M. Cahan and
Tina Hernandez{-}Boussard and
Sonoo Thadaney Israni and
Daniel L. Rubin},
title = {Putting the data before the algorithm in big data addressing personalized
healthcare},
journal = {npj Digit. Medicine},
volume = {2},
year = {2019},
url = {https://doi.org/10.1038/s41746-019-0157-2},
doi = {10.1038/S41746-019-0157-2},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/npjdm/CahanHIR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/BanerjeeSARZL19,
author = {Imon Banerjee and
Miji Sofela and
Timothy Amrhein and
Daniel L. Rubin and
Roham Zamanian and
Matthew P. Lungren},
title = {Prediction of Imaging Outcomes from Electronic Health Records: Pulmonary
Embolism Case-Study},
booktitle = {{AMIA} 2019, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2019},
publisher = {{AMIA}},
year = {2019},
url = {https://knowledge.amia.org/69862-amia-1.4570936/t006-1.4574499/t006-1.4574500/3203310-1.4574810/3202959-1.4574807},
timestamp = {Wed, 17 Apr 2024 11:47:08 +0200},
biburl = {https://dblp.org/rec/conf/amia/BanerjeeSARZL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiBRC19,
author = {Ron C. Li and
Imon Banerjee and
Daniel L. Rubin and
Jonathan H. Chen},
title = {Detecting unanticipated actions downstream from clinical decision
support: a data mining approach},
booktitle = {{AMIA} 2019, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2019},
publisher = {{AMIA}},
year = {2019},
url = {https://knowledge.amia.org/69862-amia-1.4570936/t006-1.4574499/t006-1.4574500/3201613-1.4574669/3202295-1.4574666},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/LiBRC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/ZhangJNLRC19,
author = {Yuhan Zhang and
Zexuan Ji and
Sijie Niu and
Theodore Leng and
Daniel L. Rubin and
Qiang Chen},
title = {A Multi-Scale Deep Convolutional Neural Network For Joint Segmentation
And Prediction Of Geographic Atrophy In {SD-OCT} Images},
booktitle = {16th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2019, Venice, Italy, April 8-11, 2019},
pages = {565--568},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/ISBI.2019.8759253},
doi = {10.1109/ISBI.2019.8759253},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbi/ZhangJNLRC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/micad/VanoostCRD19,
author = {Guillaume Vanoost and
Yashin Dicente Cid and
Daniel L. Rubin and
Adrien Depeursinge},
editor = {Kensaku Mori and
Horst K. Hahn},
title = {A lung graph model for the classification of interstitial lung diseases
on {CT} images},
booktitle = {Medical Imaging 2019: Computer-Aided Diagnosis, San Diego, California,
United States, 16-21 February 2019},
series = {{SPIE} Proceedings},
volume = {10950},
pages = {109503H},
publisher = {{SPIE}},
year = {2019},
url = {https://doi.org/10.1117/12.2512866},
doi = {10.1117/12.2512866},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/micad/VanoostCRD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/HatamizadehHSLW19,
author = {Ali Hatamizadeh and
Assaf Hoogi and
Debleena Sengupta and
Wuyue Lu and
Brian Wilcox and
Daniel L. Rubin and
Demetri Terzopoulos},
editor = {Heung{-}Il Suk and
Mingxia Liu and
Pingkun Yan and
Chunfeng Lian},
title = {Deep Active Lesion Segmentation},
booktitle = {Machine Learning in Medical Imaging - 10th International Workshop,
{MLMI} 2019, Held in Conjunction with {MICCAI} 2019, Shenzhen, China,
October 13, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11861},
pages = {98--105},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-32692-0\_12},
doi = {10.1007/978-3-030-32692-0\_12},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/HatamizadehHSLW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/SaabDGRSRR19,
author = {Khaled Saab and
Jared Dunnmon and
Roger E. Goldman and
Alexander Ratner and
Hersh Sagreiya and
Christopher R{\'{e}} and
Daniel L. Rubin},
editor = {Dinggang Shen and
Tianming Liu and
Terry M. Peters and
Lawrence H. Staib and
Caroline Essert and
Sean Zhou and
Pew{-}Thian Yap and
Ali R. Khan},
title = {Doubly Weak Supervision of Deep Learning Models for Head {CT}},
booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
2019 - 22nd International Conference, Shenzhen, China, October 13-17,
2019, Proceedings, Part {III}},
series = {Lecture Notes in Computer Science},
volume = {11766},
pages = {811--819},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-32248-9\_90},
doi = {10.1007/978-3-030-32248-9\_90},
timestamp = {Mon, 19 Feb 2024 14:24:13 +0100},
biburl = {https://dblp.org/rec/conf/miccai/SaabDGRSRR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1902-10700,
author = {Imon Banerjee and
Luis de Sisternes and
Joelle A. Hallak and
Theodore Leng and
Aaron Osborne and
Mary Durbin and
Daniel L. Rubin},
title = {A Deep-learning Approach for Prognosis of Age-Related Macular Degeneration
Disease using {SD-OCT} Imaging Biomarkers},
journal = {CoRR},
volume = {abs/1902.10700},
year = {2019},
url = {http://arxiv.org/abs/1902.10700},
eprinttype = {arXiv},
eprint = {1902.10700},
timestamp = {Tue, 02 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1902-10700.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1903-07988,
author = {Endre Gr{\o}vik and
Darvin Yi and
Michael Iv and
Elisabeth Tong and
Daniel L. Rubin and
Greg Zaharchuk},
title = {Deep Learning Enables Automatic Detection and Segmentation of Brain
Metastases on Multi-Sequence {MRI}},
journal = {CoRR},
volume = {abs/1903.07988},
year = {2019},
url = {http://arxiv.org/abs/1903.07988},
eprinttype = {arXiv},
eprint = {1903.07988},
timestamp = {Tue, 02 Apr 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1903-07988.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1903-11101,
author = {Jared Dunnmon and
Alexander Ratner and
Nishith Khandwala and
Khaled Saab and
Matthew Markert and
Hersh Sagreiya and
Roger E. Goldman and
Christopher Lee{-}Messer and
Matthew P. Lungren and
Daniel L. Rubin and
Christopher R{\'{e}}},
title = {Cross-Modal Data Programming Enables Rapid Medical Machine Learning},
journal = {CoRR},
volume = {abs/1903.11101},
year = {2019},
url = {http://arxiv.org/abs/1903.11101},
eprinttype = {arXiv},
eprint = {1903.11101},
timestamp = {Thu, 22 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1903-11101.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1904-12483,
author = {Assaf Hoogi and
Brian Wilcox and
Yachee Gupta and
Daniel L. Rubin},
title = {Self-Attention Capsule Networks for Image Classification},
journal = {CoRR},
volume = {abs/1904.12483},
year = {2019},
url = {http://arxiv.org/abs/1904.12483},
eprinttype = {arXiv},
eprint = {1904.12483},
timestamp = {Thu, 02 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1904-12483.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1908-06933,
author = {Ali Hatamizadeh and
Assaf Hoogi and
Debleena Sengupta and
Wuyue Lu and
Brian Wilcox and
Daniel L. Rubin and
Demetri Terzopoulos},
title = {Deep Active Lesion Segmentation},
journal = {CoRR},
volume = {abs/1908.06933},
year = {2019},
url = {http://arxiv.org/abs/1908.06933},
eprinttype = {arXiv},
eprint = {1908.06933},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1908-06933.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1908-09067,
author = {Okyaz Eminaga and
Mahmoud Abbas and
Christian Kunder and
Andreas M. Loening and
Jeanne Shen and
James D. Brooks and
Curtis P. Langlotz and
Daniel L. Rubin},
title = {Plexus Convolutional Neural Network (PlexusNet): {A} novel neural
network architecture for histologic image analysis},
journal = {CoRR},
volume = {abs/1908.09067},
year = {2019},
url = {http://arxiv.org/abs/1908.09067},
eprinttype = {arXiv},
eprint = {1908.09067},
timestamp = {Thu, 29 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1908-09067.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1910-04918,
author = {Okyaz Eminaga and
Yuri Tolkach and
Christian Kunder and
Mahmoud Abbas and
Ryan Han and
Rosalie Nolley and
Axel Semjonow and
Martin Boegemann and
Sebastian Huss and
Andreas M. Loening and
Robert B. West and
Geoffrey A. Sonn and
Richard E. Fan and
Olaf Bettendorf and
James D. Brooks and
Daniel L. Rubin},
title = {Deep Learning for Prostate Pathology},
journal = {CoRR},
volume = {abs/1910.04918},
year = {2019},
url = {http://arxiv.org/abs/1910.04918},
eprinttype = {arXiv},
eprint = {1910.04918},
timestamp = {Sun, 19 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1910-04918.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1910-09100,
author = {Okyaz Eminaga and
Mahmoud Abbas and
Yuri Tolkach and
Rosalie Nolley and
Christian Kunder and
Axel Semjonow and
Martin Boegemann and
Andreas M. Loening and
James D. Brooks and
Daniel L. Rubin},
title = {Biologic and Prognostic Feature Scores from Whole-Slide Histology
Images Using Deep Learning},
journal = {CoRR},
volume = {abs/1910.09100},
year = {2019},
url = {http://arxiv.org/abs/1910.09100},
eprinttype = {arXiv},
eprint = {1910.09100},
timestamp = {Fri, 07 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1910-09100.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1912-08775,
author = {Darvin Yi and
Endre Gr{\o}vik and
Michael Iv and
Elisabeth Tong and
Kyrre Eeg Emblem and
Line Brennhaug Nilsen and
Cathrine Saxhaug and
Anna Latysheva and
Kari Dolven Jacobsen and
{\AA}slaug Helland and
Greg Zaharchuk and
Daniel L. Rubin},
title = {{MRI} Pulse Sequence Integration for Deep-Learning Based Brain Metastasis
Segmentation},
journal = {CoRR},
volume = {abs/1912.08775},
year = {2019},
url = {http://arxiv.org/abs/1912.08775},
eprinttype = {arXiv},
eprint = {1912.08775},
timestamp = {Sat, 23 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1912-08775.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1912-11966,
author = {Endre Gr{\o}vik and
Darvin Yi and
Michael Iv and
Elizabeth Tong and
Line Brennhaug Nilsen and
Anna Latysheva and
Cathrine Saxhaug and
Kari Dolven Jacobsen and
{\AA}slaug Helland and
Kyrre Eeg Emblem and
Daniel L. Rubin and
Greg Zaharchuk},
title = {Handling Missing {MRI} Input Data in Deep Learning Segmentation of
Brain Metastases: {A} Multi-Center Study},
journal = {CoRR},
volume = {abs/1912.11966},
year = {2019},
url = {http://arxiv.org/abs/1912.11966},
eprinttype = {arXiv},
eprint = {1912.11966},
timestamp = {Sat, 23 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1912-11966.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmig/BanerjeeCBDR18,
author = {Imon Banerjee and
Alexis Crawley and
Mythili Bhethanabotla and
Heike E. Daldrup{-}Link and
Daniel L. Rubin},
title = {Transfer learning on fused multiparametric {MR} images for classifying
histopathological subtypes of rhabdomyosarcoma},
journal = {Comput. Medical Imaging Graph.},
volume = {65},
pages = {167--175},
year = {2018},
url = {https://doi.org/10.1016/j.compmedimag.2017.05.002},
doi = {10.1016/J.COMPMEDIMAG.2017.05.002},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cmig/BanerjeeCBDR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/PerchaZBRAL18,
author = {Bethany Percha and
Yuhao Zhang and
Selen Bozkurt and
Daniel L. Rubin and
Russ B. Altman and
Curtis P. Langlotz},
title = {Expanding a radiology lexicon using contextual patterns in radiology
reports},
journal = {J. Am. Medical Informatics Assoc.},
volume = {25},
number = {6},
pages = {679--685},
year = {2018},
url = {https://doi.org/10.1093/jamia/ocx152},
doi = {10.1093/JAMIA/OCX152},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/PerchaZBRAL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/VreemanAWCCRL18,
author = {Daniel J. Vreeman and
Swapna Abhyankar and
Kenneth C. Wang and
Chris Carr and
Beverly Collins and
Daniel L. Rubin and
Curtis P. Langlotz},
title = {The {LOINC} {RSNA} radiology playbook - a unified terminology for
radiology procedures},
journal = {J. Am. Medical Informatics Assoc.},
volume = {25},
number = {7},
pages = {885--893},
year = {2018},
url = {https://doi.org/10.1093/jamia/ocy053},
doi = {10.1093/JAMIA/OCY053},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/VreemanAWCCRL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ChangBLYBBRRK18,
author = {Ken Chang and
Niranjan Balachandar and
Carson K. Lam and
Darvin Yi and
James M. Brown and
Andrew Beers and
Bruce R. Rosen and
Daniel L. Rubin and
Jayashree Kalpathy{-}Cramer},
title = {Distributed deep learning networks among institutions for medical
imaging},
journal = {J. Am. Medical Informatics Assoc.},
volume = {25},
number = {8},
pages = {945--954},
year = {2018},
url = {https://doi.org/10.1093/jamia/ocy017},
doi = {10.1093/JAMIA/OCY017},
timestamp = {Tue, 16 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/ChangBLYBBRRK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/BanerjeeCLR18,
author = {Imon Banerjee and
Matthew C. Chen and
Matthew P. Lungren and
Daniel L. Rubin},
title = {Radiology report annotation using intelligent word embeddings: Applied
to multi-institutional chest {CT} cohort},
journal = {J. Biomed. Informatics},
volume = {77},
pages = {11--20},
year = {2018},
url = {https://doi.org/10.1016/j.jbi.2017.11.012},
doi = {10.1016/J.JBI.2017.11.012},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/BanerjeeCLR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/GuptaBR18,
author = {Anupama Gupta and
Imon Banerjee and
Daniel L. Rubin},
title = {Automatic information extraction from unstructured mammography reports
using distributed semantics},
journal = {J. Biomed. Informatics},
volume = {78},
pages = {78--86},
year = {2018},
url = {https://doi.org/10.1016/j.jbi.2017.12.016},
doi = {10.1016/J.JBI.2017.12.016},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/GuptaBR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/BanerjeeKDDRB18,
author = {Imon Banerjee and
Camille Kurtz and
Alon Edward Devorah and
Bao H. Do and
Daniel L. Rubin and
Christopher F. Beaulieu},
title = {Relevance feedback for enhancing content based image retrieval and
automatic prediction of semantic image features: Application to bone
tumor radiographs},
journal = {J. Biomed. Informatics},
volume = {84},
pages = {123--135},
year = {2018},
url = {https://doi.org/10.1016/j.jbi.2018.07.002},
doi = {10.1016/J.JBI.2018.07.002},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/BanerjeeKDDRB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/EchegarayBRN18,
author = {Sebastian Echegaray and
Shaimaa Bakr and
Daniel L. Rubin and
Sandy Napel},
title = {Quantitative Image Feature Engine {(QIFE):} an Open-Source, Modular
Engine for 3D Quantitative Feature Extraction from Volumetric Medical
Images},
journal = {J. Digit. Imaging},
volume = {31},
number = {4},
pages = {403--414},
year = {2018},
url = {https://doi.org/10.1007/s10278-017-0019-x},
doi = {10.1007/S10278-017-0019-X},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/EchegarayBRN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/BuluSLBR18,
author = {Hakan Bulu and
Dorothy A. Sippo and
Janie M. Lee and
Elizabeth S. Burnside and
Daniel L. Rubin},
title = {Proposing New RadLex Terms by Analyzing Free-Text Mammography Reports},
journal = {J. Digit. Imaging},
volume = {31},
number = {5},
pages = {596--603},
year = {2018},
url = {https://doi.org/10.1007/s10278-018-0064-0},
doi = {10.1007/S10278-018-0064-0},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/BuluSLBR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/BanerjeeCDR18,
author = {Imon Banerjee and
Hailey H. Choi and
Terry S. Desser and
Daniel L. Rubin},
title = {A Scalable Machine Learning Approach for Inferring Probabilistic {US-LI-RADS}
Categorization},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t004-1.4263758/t004-1.4263759/2976494-1.4264069/2975669-1.4264066},
timestamp = {Wed, 17 Apr 2024 11:47:15 +0200},
biburl = {https://dblp.org/rec/conf/amia/BanerjeeCDR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/BozkurtIMFRBH18,
author = {Selen Bozkurt and
Jung Park In and
Kathleen Mary Kan and
Michelle Ferrari and
Daniel L. Rubin and
James D. Brooks and
Tina Hernandez{-}Boussard},
title = {An Automated Feature Engineering for Digital Rectal Examination Documentation
using Natural Language Processing},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t004-1.4263758/t004-1.4263759/2976418-1.4264045/2976774-1.4264042},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/BozkurtIMFRBH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/YuBRRAS18,
author = {Kun{-}Hsing Yu and
Gerald J. Berry and
Daniel L. Rubin and
Christopher R{\'{e}} and
Russ B. Altman and
Michael Snyder},
title = {Unraveling the Molecular Basis of Lung Adenocarcinoma Dedifferentiation
and Prognosis by Integrating Omics and Histopathology},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t006-1.4263223/t006-1.4263224/2973466-1.4263237/2976036-1.4263234},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/YuBRRAS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ChengGLSLR18,
author = {Myra Cheng and
Alfiia Galimzianova and
Ziga Lesjak and
Ziga Spiclin and
Christopher B. Lock and
Daniel L. Rubin},
editor = {Danail Stoyanov and
Zeike Taylor and
Gustavo Carneiro and
Tanveer F. Syeda{-}Mahmood and
Anne L. Martel and
Lena Maier{-}Hein and
Jo{\~{a}}o Manuel R. S. Tavares and
Andrew P. Bradley and
Jo{\~{a}}o Paulo Papa and
Vasileios Belagiannis and
Jacinto C. Nascimento and
Zhi Lu and
Sailesh Conjeti and
Mehdi Moradi and
Hayit Greenspan and
Anant Madabhushi},
title = {A Multi-scale Multiple Sclerosis Lesion Change Detection in a Multi-sequence
{MRI}},
booktitle = {Deep Learning in Medical Image Analysis - and - Multimodal Learning
for Clinical Decision Support - 4th International Workshop, {DLMIA}
2018, and 8th International Workshop, {ML-CDS} 2018, Held in Conjunction
with {MICCAI} 2018, Granada, Spain, September 20, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11045},
pages = {353--360},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-00889-5\_40},
doi = {10.1007/978-3-030-00889-5\_40},
timestamp = {Tue, 18 Apr 2023 21:52:48 +0200},
biburl = {https://dblp.org/rec/conf/miccai/ChengGLSLR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1801-03058,
author = {Imon Banerjee and
Michael Francis Gensheimer and
Douglas J. Wood and
Solomon Henry and
Daniel T. Chang and
Daniel L. Rubin},
title = {Probabilistic Prognostic Estimates of Survival in Metastatic Cancer
Patients (PPES-Met) Utilizing Free-Text Clinical Narratives},
journal = {CoRR},
volume = {abs/1801.03058},
year = {2018},
url = {http://arxiv.org/abs/1801.03058},
eprinttype = {arXiv},
eprint = {1801.03058},
timestamp = {Wed, 08 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1801-03058.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1806-07346,
author = {Imon Banerjee and
Hailey H. Choi and
Terry S. Desser and
Daniel L. Rubin},
title = {A Scalable Machine Learning Approach for Inferring Probabilistic {US-LI-RADS}
Categorization},
journal = {CoRR},
volume = {abs/1806.07346},
year = {2018},
url = {http://arxiv.org/abs/1806.07346},
eprinttype = {arXiv},
eprint = {1806.07346},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1806-07346.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1811-11226,
author = {Blaine Rister and
Darvin Yi and
Kaushik Shivakumar and
Tomomi Nobashi and
Daniel L. Rubin},
title = {{CT} organ segmentation using {GPU} data augmentation, unsupervised
labels and {IOU} loss},
journal = {CoRR},
volume = {abs/1811.11226},
year = {2018},
url = {http://arxiv.org/abs/1811.11226},
eprinttype = {arXiv},
eprint = {1811.11226},
timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1811-11226.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/ChenSKR17,
author = {Xi Chen and
Ross D. Shachter and
Allison W. Kurian and
Daniel L. Rubin},
title = {Dynamic strategy for personalized medicine: An application to metastatic
breast cancer},
journal = {J. Biomed. Informatics},
volume = {68},
pages = {50--57},
year = {2017},
url = {https://doi.org/10.1016/j.jbi.2017.02.012},
doi = {10.1016/J.JBI.2017.02.012},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/ChenSKR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/HwangLKWR17,
author = {Kyung Hoon Hwang and
Haejun Lee and
Geon Koh and
Debra Willrett and
Daniel L. Rubin},
title = {Building and Querying {RDF/OWL} Database of Semantically Annotated
Nuclear Medicine Images},
journal = {J. Digit. Imaging},
volume = {30},
number = {1},
pages = {4--10},
year = {2017},
url = {https://doi.org/10.1007/s10278-016-9916-7},
doi = {10.1007/S10278-016-9916-7},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/HwangLKWR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/AkkusGHRE17,
author = {Zeynettin Akkus and
Alfiia Galimzianova and
Assaf Hoogi and
Daniel L. Rubin and
Bradley J. Erickson},
title = {Deep Learning for Brain {MRI} Segmentation: State of the Art and Future
Directions},
journal = {J. Digit. Imaging},
volume = {30},
number = {4},
pages = {449--459},
year = {2017},
url = {https://doi.org/10.1007/s10278-017-9983-4},
doi = {10.1007/S10278-017-9983-4},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/AkkusGHRE17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/BanerjeeBR17,
author = {Imon Banerjee and
Christopher F. Beaulieu and
Daniel L. Rubin},
title = {Computerized Prediction of Radiological Observations Based on Quantitative
Feature Analysis: Initial Experience in Liver Lesions},
journal = {J. Digit. Imaging},
volume = {30},
number = {4},
pages = {506--518},
year = {2017},
url = {https://doi.org/10.1007/s10278-017-9987-0},
doi = {10.1007/S10278-017-9987-0},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/BanerjeeBR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/HoogiBCHSNR17,
author = {Assaf Hoogi and
Christopher F. Beaulieu and
Guilherme M. Cunha and
Elhamy Heba and
Claude B. Sirlin and
Sandy Napel and
Daniel L. Rubin},
title = {Adaptive local window for level set segmentation of {CT} and {MRI}
liver lesions},
journal = {Medical Image Anal.},
volume = {37},
pages = {46--55},
year = {2017},
url = {https://doi.org/10.1016/j.media.2017.01.002},
doi = {10.1016/J.MEDIA.2017.01.002},
timestamp = {Mon, 24 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/mia/HoogiBCHSNR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nn/RisterR17,
author = {Blaine Rister and
Daniel L. Rubin},
title = {Piecewise convexity of artificial neural networks},
journal = {Neural Networks},
volume = {94},
pages = {34--45},
year = {2017},
url = {https://doi.org/10.1016/j.neunet.2017.06.009},
doi = {10.1016/J.NEUNET.2017.06.009},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nn/RisterR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pr/NiuCSJZR17,
author = {Sijie Niu and
Qiang Chen and
Luis de Sisternes and
Zexuan Ji and
Ze Ming Zhou and
Daniel L. Rubin},
title = {Robust noise region-based active contour model via local similarity
factor for image segmentation},
journal = {Pattern Recognit.},
volume = {61},
pages = {104--119},
year = {2017},
url = {https://doi.org/10.1016/j.patcog.2016.07.022},
doi = {10.1016/J.PATCOG.2016.07.022},
timestamp = {Mon, 24 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/pr/NiuCSJZR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tip/RisterHR17,
author = {Blaine Rister and
Mark A. Horowitz and
Daniel L. Rubin},
title = {Volumetric Image Registration From Invariant Keypoints},
journal = {{IEEE} Trans. Image Process.},
volume = {26},
number = {10},
pages = {4900--4910},
year = {2017},
url = {https://doi.org/10.1109/TIP.2017.2722689},
doi = {10.1109/TIP.2017.2722689},
timestamp = {Sun, 10 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tip/RisterHR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/LekadirGBVIRFRN17,
author = {Karim Lekadir and
Alfiia Galimzianova and
{\`{A}}ngels Betriu and
Maria del Mar Vila and
Laura Igual and
Daniel L. Rubin and
Elvira Fern{\'{a}}ndez and
Petia Radeva and
Sandy Napel},
title = {A Convolutional Neural Network for Automatic Characterization of Plaque
Composition in Carotid Ultrasound},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {21},
number = {1},
pages = {48--55},
year = {2017},
url = {https://doi.org/10.1109/JBHI.2016.2631401},
doi = {10.1109/JBHI.2016.2631401},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/titb/LekadirGBVIRFRN17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/HoogiSVR17,
author = {Assaf Hoogi and
Arjun Subramaniam and
Rishi Veerapaneni and
Daniel L. Rubin},
title = {Adaptive Estimation of Active Contour Parameters Using Convolutional
Neural Networks and Texture Analysis},
journal = {{IEEE} Trans. Medical Imaging},
volume = {36},
number = {3},
pages = {781--791},
year = {2017},
url = {https://doi.org/10.1109/TMI.2016.2628084},
doi = {10.1109/TMI.2016.2628084},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/HoogiSVR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/BanerjeeMGR17,
author = {Imon Banerjee and
Sriraman Madhavan and
Roger Eric Goldman and
Daniel L. Rubin},
title = {Intelligent Word Embeddings of Free-Text Radiology Reports},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t003-1.4258387/f003-1.4258388/2729888-1.4258872/2730147-1.4258869},
timestamp = {Wed, 17 Apr 2024 11:47:24 +0200},
biburl = {https://dblp.org/rec/conf/amia/BanerjeeMGR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/GalimzianovaSKD17,
author = {Alfiia Galimzianova and
Sean M. Siebert and
Aya Kamaya and
Terry S. Desser and
Daniel L. Rubin},
title = {Toward Automated Pre-Biopsy Thyroid Cancer Risk Estimation in Ultrasound},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t003-1.4258387/f003-1.4258388/2731443-1.4258770/2730652-1.4258767},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/GalimzianovaSKD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HussainGYR17,
author = {Zeshan Hussain and
Francisco Gimenez and
Darvin Yi and
Daniel L. Rubin},
title = {Differential Data Augmentation Techniques for Medical Imaging Classification
Tasks},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t003-1.4258387/f003-1.4258388/2728928-1.4258692/2730723-1.4258689},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/HussainGYR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/VreemanWCCADMRL17,
author = {Daniel J. Vreeman and
Ken Wang and
Chris Carr and
Beverly Collins and
Swapna Abhyankar and
Jamalynne Deckard and
Clement J. McDonald and
Daniel L. Rubin and
Curtis P. Langlotz},
title = {The {LOINC/RSNA} Radiology Playbook: {A} unified terminology for radiology
procedures},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t001-1.4259018/f001-1.4259019/2731572-1.4259068/2731495-1.4259065},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/VreemanWCCADMRL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/YuZBARRS17,
author = {Kun{-}Hsing Yu and
Ce Zhang and
Gerald J. Berry and
Russ B. Altman and
Christopher R{\'{e}} and
Daniel L. Rubin and
Michael Snyder},
title = {Predicting Non-Small Cell Lung Cancer Diagnosis and Prognosis by Fully
Automated Microscopic Pathology Image Features},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t001-1.4259018/f001-1.4259019/2730227-1.4259041/2731909-1.4259038},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/YuZBARRS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/FedorovRCPK17,
author = {Andriy Fedorov and
Daniel L. Rubin and
David A. Clunie and
Steve Pieper and
Ron Kikinis},
title = {Standardized communications of quantitative image analysis results
using {DICOM:} Establishing interoperability through outreach and
community engagement},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
CA, USA, March 27-30, 2017},
publisher = {{AMIA}},
year = {2017},
url = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t003-1.3521532/t003-1.3521533/a056-1.3521649/a057-1.3521646},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cri/FedorovRCPK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/VarmaHBKBRR17,
author = {Paroma Varma and
Bryan D. He and
Payal Bajaj and
Nishith Khandwala and
Imon Banerjee and
Daniel L. Rubin and
Christopher R{\'{e}}},
editor = {Isabelle Guyon and
Ulrike von Luxburg and
Samy Bengio and
Hanna M. Wallach and
Rob Fergus and
S. V. N. Vishwanathan and
Roman Garnett},
title = {Inferring Generative Model Structure with Static Analysis},
booktitle = {Advances in Neural Information Processing Systems 30: Annual Conference
on Neural Information Processing Systems 2017, December 4-9, 2017,
Long Beach, CA, {USA}},
pages = {240--250},
year = {2017},
url = {https://proceedings.neurips.cc/paper/2017/hash/cedebb6e872f539bef8c3f919874e9d7-Abstract.html},
timestamp = {Thu, 21 Jan 2021 13:58:27 +0100},
biburl = {https://dblp.org/rec/conf/nips/VarmaHBKBRR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/HoogiLZCR17,
author = {Assaf Hoogi and
John W. Lambert and
Yefeng Zheng and
Dorin Comaniciu and
Daniel L. Rubin},
title = {A Fully-Automated Pipeline for Detection and Segmentation of Liver
Lesions and Pathological Lymph Nodes},
journal = {CoRR},
volume = {abs/1703.06418},
year = {2017},
url = {http://arxiv.org/abs/1703.06418},
eprinttype = {arXiv},
eprint = {1703.06418},
timestamp = {Tue, 21 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/HoogiLZCR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/YiSCDLXR17,
author = {Darvin Yi and
Rebecca Lynn Sawyer and
David Cohn III and
Jared Dunnmon and
Carson K. Lam and
Xuerong Xiao and
Daniel L. Rubin},
title = {Optimizing and Visualizing Deep Learning for Benign/Malignant Classification
in Breast Tumors},
journal = {CoRR},
volume = {abs/1705.06362},
year = {2017},
url = {http://arxiv.org/abs/1705.06362},
eprinttype = {arXiv},
eprint = {1705.06362},
timestamp = {Fri, 24 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/YiSCDLXR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1709-02477,
author = {Paroma Varma and
Bryan D. He and
Payal Bajaj and
Imon Banerjee and
Nishith Khandwala and
Daniel L. Rubin and
Christopher R{\'{e}}},
title = {Inferring Generative Model Structure with Static Analysis},
journal = {CoRR},
volume = {abs/1709.02477},
year = {2017},
url = {http://arxiv.org/abs/1709.02477},
eprinttype = {arXiv},
eprint = {1709.02477},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1709-02477.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1709-05929,
author = {Ken Chang and
Niranjan Balachandar and
Carson K. Lam and
Darvin Yi and
James M. Brown and
Andrew Beers and
Bruce R. Rosen and
Daniel L. Rubin and
Jayashree Kalpathy{-}Cramer},
title = {Institutionally Distributed Deep Learning Networks},
journal = {CoRR},
volume = {abs/1709.05929},
year = {2017},
url = {http://arxiv.org/abs/1709.05929},
eprinttype = {arXiv},
eprint = {1709.05929},
timestamp = {Wed, 17 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1709-05929.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1711-06968,
author = {Imon Banerjee and
Sriraman Madhavan and
Roger Eric Goldman and
Daniel L. Rubin},
title = {Intelligent Word Embeddings of Free-Text Radiology Reports},
journal = {CoRR},
volume = {abs/1711.06968},
year = {2017},
url = {http://arxiv.org/abs/1711.06968},
eprinttype = {arXiv},
eprint = {1711.06968},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1711-06968.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/FinlaysonLRR16,
author = {Samuel G. Finlayson and
Mia A. Levy and
Sunil Reddy and
Daniel L. Rubin},
title = {Toward rapid learning in cancer treatment selection: An analytical
engine for practice-based clinical data},
journal = {J. Biomed. Informatics},
volume = {60},
pages = {104--113},
year = {2016},
url = {https://doi.org/10.1016/j.jbi.2016.01.005},
doi = {10.1016/J.JBI.2016.01.005},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/FinlaysonLRR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/BozkurtGBGR16,
author = {Selen Bozkurt and
Francisco Gimenez and
Elizabeth S. Burnside and
Kemal Hakan G{\"{u}}lkesen and
Daniel L. Rubin},
title = {Using automatically extracted information from mammography reports
for decision-support},
journal = {J. Biomed. Informatics},
volume = {62},
pages = {224--231},
year = {2016},
url = {https://doi.org/10.1016/j.jbi.2016.07.001},
doi = {10.1016/J.JBI.2016.07.001},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/BozkurtGBGR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/BarkerHDR16,
author = {Jocelyn Barker and
Assaf Hoogi and
Adrien Depeursinge and
Daniel L. Rubin},
title = {Automated classification of brain tumor type in whole-slide digital
pathology images using local representative tiles},
journal = {Medical Image Anal.},
volume = {30},
pages = {60--71},
year = {2016},
url = {https://doi.org/10.1016/j.media.2015.12.002},
doi = {10.1016/J.MEDIA.2015.12.002},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mia/BarkerHDR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/DiamantHBSKAGR16,
author = {Idit Diamant and
Assaf Hoogi and
Christopher F. Beaulieu and
Mustafa Safdari and
Eyal Klang and
Michal Amitai and
Hayit Greenspan and
Daniel L. Rubin},
title = {Improved Patch-Based Automated Liver Lesion Classification by Separate
Analysis of the Interior and Boundary Regions},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {20},
number = {6},
pages = {1585--1594},
year = {2016},
url = {https://doi.org/10.1109/JBHI.2015.2478255},
doi = {10.1109/JBHI.2015.2478255},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/titb/DiamantHBSKAGR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/CirujedaCMRALDB16,
author = {Pol Cirujeda and
Yashin Dicente Cid and
Henning M{\"{u}}ller and
Daniel L. Rubin and
Todd A. Aguilera and
Billy W. Loo and
Maximilian Diehn and
Xavier Binefa and
Adrien Depeursinge},
title = {A 3-D Riesz-Covariance Texture Model for Prediction of Nodule Recurrence
in Lung {CT}},
journal = {{IEEE} Trans. Medical Imaging},
volume = {35},
number = {12},
pages = {2620--2630},
year = {2016},
url = {https://doi.org/10.1109/TMI.2016.2591921},
doi = {10.1109/TMI.2016.2591921},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tmi/CirujedaCMRALDB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/HoogiBCHSNR16,
author = {Assaf Hoogi and
Christopher F. Beaulieu and
Guilherme M. Cunha and
Elhamy Heba and
Claude B. Sirlin and
Sandy Napel and
Daniel L. Rubin},
title = {Adaptive Local Window for Level Set Segmentation of {CT} and {MRI}
Liver Lesions},
journal = {CoRR},
volume = {abs/1606.03765},
year = {2016},
url = {http://arxiv.org/abs/1606.03765},
eprinttype = {arXiv},
eprint = {1606.03765},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/HoogiBCHSNR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BanerjeeHSFR16,
author = {Imon Banerjee and
Lewis Hahn and
Geoffrey A. Sonn and
Richard E. Fan and
Daniel L. Rubin},
title = {Computerized Multiparametric {MR} image Analysis for Prostate Cancer
Aggressiveness-Assessment},
journal = {CoRR},
volume = {abs/1612.00408},
year = {2016},
url = {http://arxiv.org/abs/1612.00408},
eprinttype = {arXiv},
eprint = {1612.00408},
timestamp = {Mon, 15 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/BanerjeeHSFR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/BozkurtLSR15,
author = {Selen Bozkurt and
Jafi A. Lipson and
Utku Senol and
Daniel L. Rubin},
title = {Automatic abstraction of imaging observations with their characteristics
from mammography reports},
journal = {J. Am. Medical Informatics Assoc.},
volume = {22},
number = {e1},
pages = {e81--e92},
year = {2015},
url = {https://doi.org/10.1136/amiajnl-2014-003009},
doi = {10.1136/AMIAJNL-2014-003009},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/BozkurtLSR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/De-ArteagaEDRKM15,
author = {Maria De{-}Arteaga and
Ivan Eggel and
Bao H. Do and
Daniel L. Rubin and
Charles E. Kahn Jr. and
Henning M{\"{u}}ller},
title = {Comparing image search behaviour in the {ARRS} GoldMiner search engine
and a clinical {PACS/RIS}},
journal = {J. Biomed. Informatics},
volume = {56},
pages = {57--64},
year = {2015},
url = {https://doi.org/10.1016/j.jbi.2015.04.013},
doi = {10.1016/J.JBI.2015.04.013},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/De-ArteagaEDRKM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/ChenSLR15,
author = {Qiang Chen and
Luis de Sisternes and
Theodore Leng and
Daniel L. Rubin},
title = {Application of Improved Homogeneity Similarity-Based Denoising in
Optical Coherence Tomography Retinal Images},
journal = {J. Digit. Imaging},
volume = {28},
number = {3},
pages = {346--361},
year = {2015},
url = {https://doi.org/10.1007/s10278-014-9742-8},
doi = {10.1007/S10278-014-9742-8},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/ChenSLR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ErtosunR15,
author = {Mehmet G{\"{u}}nhan Ertosun and
Daniel L. Rubin},
title = {Automated Grading of Gliomas using Deep Learning in Digital Pathology
Images: {A} modular approach with ensemble of convolutional neural
networks},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t007-1.2744224/f007-1.2744225/2247880-1.2744299/2243353-1.2744296},
timestamp = {Wed, 17 Apr 2024 11:47:40 +0200},
biburl = {https://dblp.org/rec/conf/amia/ErtosunR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/Rubin15,
author = {Daniel L. Rubin},
title = {ePAD: Leveraging image data in learning healthcare systems},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t008-1.2744186/f008-1.2744187/2248463-1.2744194/2247330-1.2744191},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/Rubin15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SisternesRJSR15,
author = {Luis de Sisternes and
Joseph Rothstein and
Abra Jeffers and
Weiva Sieh and
Daniel L. Rubin},
title = {Polychromatic X-Ray Absorptiometry to Quantify Breast Density Volume,
Ratio and their Associated Breast Cancer Risk in Full-Digital Mammography},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t001-1.2745946/f001-1.2745947/2247587-1.2746182/2249076-1.2746179},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SisternesRJSR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/ErtosunR15,
author = {Mehmet G{\"{u}}nhan Ertosun and
Daniel L. Rubin},
editor = {Jun Huan and
Satoru Miyano and
Amarda Shehu and
Xiaohua Tony Hu and
Bin Ma and
Sanguthevar Rajasekaran and
Vijay K. Gombar and
Matthieu{-}P. Schapranow and
Illhoi Yoo and
Jiayu Zhou and
Brian Chen and
Vinay Pai and
Brian G. Pierce},
title = {Probabilistic visual search for masses within mammography images using
deep learning},
booktitle = {2015 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2015, Washington, DC, USA, November 9-12, 2015},
pages = {1310--1315},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/BIBM.2015.7359868},
doi = {10.1109/BIBM.2015.7359868},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/ErtosunR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cbms/MoreiraHLWR15,
author = {Dilvan A. Moreira and
Cleber Hage and
Edson F. Luque and
Debra Willrett and
Daniel L. Rubin},
editor = {Caetano Traina Jr. and
Pedro Pereira Rodrigues and
Bridget Kane and
Paulo Mazzoncini de Azevedo Marques and
Agma Juci Machado Traina},
title = {3D Markup of Radiological Images in ePAD, a Web-Based Image Annotation
Tool},
booktitle = {28th {IEEE} International Symposium on Computer-Based Medical Systems,
{CBMS} 2015, Sao Carlos, Brazil, June 22-25, 2015},
pages = {97--102},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/CBMS.2015.46},
doi = {10.1109/CBMS.2015.46},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cbms/MoreiraHLWR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cbms/LuqueRM15,
author = {Edson F. Luque and
Daniel L. Rubin and
Dilvan A. Moreira},
editor = {Caetano Traina Jr. and
Pedro Pereira Rodrigues and
Bridget Kane and
Paulo Mazzoncini de Azevedo Marques and
Agma Juci Machado Traina},
title = {Automatic Classification of Cancer Tumors Using Image Annotations
and Ontologies},
booktitle = {28th {IEEE} International Symposium on Computer-Based Medical Systems,
{CBMS} 2015, Sao Carlos, Brazil, June 22-25, 2015},
pages = {368--369},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/CBMS.2015.83},
doi = {10.1109/CBMS.2015.83},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cbms/LuqueRM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ecir/KurtzITCBR15,
author = {Camille Kurtz and
Paul{-}Andr{\'{e}} Idoux and
Avinash Thangali and
Florence Cloppet and
Christopher F. Beaulieu and
Daniel L. Rubin},
editor = {Henning M{\"{u}}ller and
Oscar Alfonso Jim{\'{e}}nez del Toro and
Allan Hanbury and
Georg Langs and
Antonio Foncubierta{-}Rodr{\'{\i}}guez},
title = {Semantic Retrieval of Radiological Images with Relevance Feedback},
booktitle = {Multimodal Retrieval in the Medical Domain - First International Workshop,
{MRMD} 2015, Vienna, Austria, March 29, 2015, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {9059},
pages = {11--25},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-24471-6\_2},
doi = {10.1007/978-3-319-24471-6\_2},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ecir/KurtzITCBR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/YuanHBMR15,
author = {Yixuan Yuan and
Assaf Hoogi and
Christopher F. Beaulieu and
Max Q.{-}H. Meng and
Daniel L. Rubin},
title = {Weighted locality-constrained linear coding for lesion classification
in {CT} images},
booktitle = {37th Annual International Conference of the {IEEE} Engineering in
Medicine and Biology Society, {EMBC} 2015, Milan, Italy, August 25-29,
2015},
pages = {6362--6365},
publisher = {{IEEE}},
year = {2015},
url = {https://doi.org/10.1109/EMBC.2015.7319848},
doi = {10.1109/EMBC.2015.7319848},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/embc/YuanHBMR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/CirujedaMRALDBD15,
author = {Pol Cirujeda and
Henning M{\"{u}}ller and
Daniel L. Rubin and
Todd A. Aguilera and
Billy W. Loo and
Maximilian Diehn and
Xavier Binefa and
Adrien Depeursinge},
title = {3D Riesz-wavelet based Covariance descriptors for texture classification
of lung nodule tissue in {CT}},
booktitle = {37th Annual International Conference of the {IEEE} Engineering in
Medicine and Biology Society, {EMBC} 2015, Milan, Italy, August 25-29,
2015},
pages = {7909--7912},
publisher = {{IEEE}},
year = {2015},
url = {https://doi.org/10.1109/EMBC.2015.7320226},
doi = {10.1109/EMBC.2015.7320226},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/embc/CirujedaMRALDBD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/DepeursingePCLR15,
author = {Adrien Depeursinge and
Pedram Pad and
Anne S. Chin and
Ann N. Leung and
Daniel L. Rubin and
Henning M{\"{u}}ller and
Michael Unser},
title = {Optimized steerable wavelets for texture analysis of lung tissue in
3-D {CT:} Classification of usual interstitial pneumonia},
booktitle = {12th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2015, Brooklyn, NY, USA, April 16-19, 2015},
pages = {403--406},
publisher = {{IEEE}},
year = {2015},
url = {https://doi.org/10.1109/ISBI.2015.7163897},
doi = {10.1109/ISBI.2015.7163897},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/DepeursingePCLR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/NicholsMDNMTRB14,
author = {B. Nolan Nichols and
Jos{\'{e}} L. V. Mejino Jr. and
Landon Detwiler and
Trond T. Nilsen and
Maryann E. Martone and
Jessica A. Turner and
Daniel L. Rubin and
James F. Brinkley},
title = {Neuroanatomical domain of the foundational model of anatomy ontology},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {1},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-1},
doi = {10.1186/2041-1480-5-1},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/NicholsMDNMTRB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/NiuCSRZL14,
author = {Sijie Niu and
Qiang Chen and
Luis de Sisternes and
Daniel L. Rubin and
Weiwei Zhang and
Qinghuai Liu},
title = {Automated retinal layers segmentation in {SD-OCT} images using dual-gradient
and spatial correlation smoothness constraint},
journal = {Comput. Biol. Medicine},
volume = {54},
pages = {116--128},
year = {2014},
url = {https://doi.org/10.1016/j.compbiomed.2014.08.028},
doi = {10.1016/J.COMPBIOMED.2014.08.028},
timestamp = {Wed, 02 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cbm/NiuCSRZL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cviu/AdcockRC14,
author = {Aaron Adcock and
Daniel L. Rubin and
Gunnar Carlsson},
title = {Classification of hepatic lesions using the matching metric},
journal = {Comput. Vis. Image Underst.},
volume = {121},
pages = {36--42},
year = {2014},
url = {https://doi.org/10.1016/j.cviu.2013.10.014},
doi = {10.1016/J.CVIU.2013.10.014},
timestamp = {Fri, 21 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cviu/AdcockRC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/KurtzBNR14,
author = {Camille Kurtz and
Christopher F. Beaulieu and
Sandy Napel and
Daniel L. Rubin},
title = {A hierarchical knowledge-based approach for retrieving similar medical
images described with semantic annotations},
journal = {J. Biomed. Informatics},
volume = {49},
pages = {227--244},
year = {2014},
url = {https://doi.org/10.1016/j.jbi.2014.02.018},
doi = {10.1016/J.JBI.2014.02.018},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/KurtzBNR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/MongkolwatKTR14,
author = {Pattanasak Mongkolwat and
Vladimir Kleper and
Skip Talbot and
Daniel L. Rubin},
title = {The National Cancer Informatics Program {(NCIP)} Annotation and Image
Markup {(AIM)} Foundation Model},
journal = {J. Digit. Imaging},
volume = {27},
number = {6},
pages = {692--701},
year = {2014},
url = {https://doi.org/10.1007/s10278-014-9710-3},
doi = {10.1007/S10278-014-9710-3},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/MongkolwatKTR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/KurtzDNBR14,
author = {Camille Kurtz and
Adrien Depeursinge and
Sandy Napel and
Christopher F. Beaulieu and
Daniel L. Rubin},
title = {On combining image-based and ontological semantic dissimilarities
for medical image retrieval applications},
journal = {Medical Image Anal.},
volume = {18},
number = {7},
pages = {1082--1100},
year = {2014},
url = {https://doi.org/10.1016/j.media.2014.06.009},
doi = {10.1016/J.MEDIA.2014.06.009},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/mia/KurtzDNBR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/DepeursingeKBNR14,
author = {Adrien Depeursinge and
Camille Kurtz and
Christopher F. Beaulieu and
Sandy Napel and
Daniel L. Rubin},
title = {Predicting Visual Semantic Descriptive Terms From Radiological Image
Data: Preliminary Results With Liver Lesions in {CT}},
journal = {{IEEE} Trans. Medical Imaging},
volume = {33},
number = {8},
pages = {1669--1676},
year = {2014},
url = {https://doi.org/10.1109/TMI.2014.2321347},
doi = {10.1109/TMI.2014.2321347},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tmi/DepeursingeKBNR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/GimenezWBR14,
author = {Francisco Gimenez and
Yirong Wu and
Elizabeth S. Burnside and
Daniel L. Rubin},
title = {A Novel Method to Assess Incompleteness of Mammography Report Content},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-007-1.1543793/f-007-1.1543794/a-599-1.1543870/a-600-1.1543867},
timestamp = {Wed, 17 Apr 2024 11:47:48 +0200},
biburl = {https://dblp.org/rec/conf/amia/GimenezWBR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/f-egc/KurtzR14,
author = {Camille Kurtz and
Daniel L. Rubin},
editor = {Chantal Reynaud and
Arnaud Martin and
Ren{\'{e}} Quiniou},
title = {Utilisation de relations ontologiques pour la comparaison d'images
d{\'{e}}crites par des annotations s{\'{e}}mantiques},
booktitle = {14{\`{e}}mes Journ{\'{e}}es Francophones Extraction et Gestion
des Connaissances, {EGC} 2014, Rennes, France, 28-32 Janvier, 2014},
series = {Revue des Nouvelles Technologies de l'Information},
volume = {{E-26}},
pages = {609--614},
publisher = {Hermann-{\'{E}}ditions},
year = {2014},
url = {http://editions-rnti.fr/?inprocid=1001991},
timestamp = {Tue, 17 Jun 2014 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/f-egc/KurtzR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icip/KurtzDBR14,
author = {Camille Kurtz and
Adrien Depeursinge and
Christopher F. Beaulieu and
Daniel L. Rubin},
title = {A semantic framework for the retrieval of similar radiological images
based on medical annotations},
booktitle = {2014 {IEEE} International Conference on Image Processing, {ICIP} 2014,
Paris, France, October 27-30, 2014},
pages = {2241--2245},
publisher = {{IEEE}},
year = {2014},
url = {https://doi.org/10.1109/ICIP.2014.7025454},
doi = {10.1109/ICIP.2014.7025454},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icip/KurtzDBR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mie/BozkurtR14,
author = {Selen Bozkurt and
Daniel L. Rubin},
editor = {Christian Lovis and
Brigitte S{\'{e}}roussi and
Arie Hasman and
Louise Pape{-}Haugaard and
Osman Saka and
Stig Kj{\ae}r Andersen},
title = {Extracting Imaging Observation Entities in Mammography Reports},
booktitle = {e-Health - For Continuity of Care - Proceedings of MIE2014, the 25th
European Medical Informatics Conference, Istanbul, Turkey, August
31 - September 3, 2014},
series = {Studies in Health Technology and Informatics},
volume = {205},
pages = {1223},
publisher = {{IOS} Press},
year = {2014},
timestamp = {Tue, 20 Sep 2016 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/mie/BozkurtR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/NarasimhanRGBL14,
author = {Balasubramanian Narasimhan and
Daniel L. Rubin and
Samuel M. Gross and
Marina Bendersky and
Philip W. Lavori},
title = {Software for Distributed Computation on Medical Databases: {A} Demonstration
Project},
journal = {CoRR},
volume = {abs/1412.6890},
year = {2014},
url = {http://arxiv.org/abs/1412.6890},
eprinttype = {arXiv},
eprint = {1412.6890},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/NarasimhanRGBL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmpb/ChenQXR13,
author = {Qiang Chen and
Fang Quan and
Jiajing Xu and
Daniel L. Rubin},
title = {Snake model-based lymphoma segmentation for sequential {CT} images},
journal = {Comput. Methods Programs Biomed.},
volume = {111},
number = {2},
pages = {366--375},
year = {2013},
url = {https://doi.org/10.1016/j.cmpb.2013.05.019},
doi = {10.1016/J.CMPB.2013.05.019},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cmpb/ChenQXR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/GoldenLTFR13,
author = {Daniel I. Golden and
Jafi A. Lipson and
Melinda L. Telli and
James M. Ford and
Daniel L. Rubin},
title = {Research and applications: Dynamic contrast-enhanced MRI-based biomarkers
of therapeutic response in triple-negative breast cancer},
journal = {J. Am. Medical Informatics Assoc.},
volume = {20},
number = {6},
pages = {1059--1066},
year = {2013},
url = {https://doi.org/10.1136/amiajnl-2012-001460},
doi = {10.1136/AMIAJNL-2012-001460},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/GoldenLTFR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/KanalKBGKMMPRSSWMMW13,
author = {Kalpana M. Kanal and
Elizabeth A. Krupinski and
Eric A. Berns and
William R. Geiser and
Andrew Karellas and
Martha B. Mainiero and
Melissa C. Martin and
Samir B. Patel and
Daniel L. Rubin and
Jon D. Shepard and
Eliot L. Siegel and
Judith A. Wolfman and
Tariq A. Mian and
Mary C. Mahoney and
Margaret Wyatt},
title = {{ACR-AAPM-SIIM} Practice Guideline for Determinants of Image Quality
in Digital Mammography},
journal = {J. Digit. Imaging},
volume = {26},
number = {1},
pages = {10--25},
year = {2013},
url = {https://doi.org/10.1007/s10278-012-9521-3},
doi = {10.1007/S10278-012-9521-3},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/KanalKBGKMMPRSSWMMW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/BucklerODWLSSRP13,
author = {Andrew J. Buckler and
Matt Ouellette and
Jovanna Danagoulian and
Gary Wernsing and
Tiffany Ting Liu and
Erica S. Savig and
Baris E. Suzek and
Daniel L. Rubin and
David Paik},
title = {Quantitative Imaging Biomarker Ontology {(QIBO)} for Knowledge Representation
of Biomedical Imaging Biomarkers},
journal = {J. Digit. Imaging},
volume = {26},
number = {4},
pages = {630--641},
year = {2013},
url = {https://doi.org/10.1007/s10278-013-9599-2},
doi = {10.1007/S10278-013-9599-2},
timestamp = {Thu, 26 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/BucklerODWLSSRP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/BucklerLSSRP13,
author = {Andrew J. Buckler and
Tiffany Ting Liu and
Erica S. Savig and
Baris E. Suzek and
Daniel L. Rubin and
David Paik},
title = {Erratum to: Quantitative Imaging Biomarker Ontology {(QIBO)} for Knowledge
Representation of Biomedical Imaging Biomarkers},
journal = {J. Digit. Imaging},
volume = {26},
number = {4},
pages = {642},
year = {2013},
url = {https://doi.org/10.1007/s10278-013-9607-6},
doi = {10.1007/S10278-013-9607-6},
timestamp = {Thu, 26 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/BucklerLSSRP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/FaruqueRBN13,
author = {Jessica S. Faruque and
Daniel L. Rubin and
Christopher F. Beaulieu and
Sandy Napel},
title = {Modeling Perceptual Similarity Measures in {CT} Images of Focal Liver
Lesions},
journal = {J. Digit. Imaging},
volume = {26},
number = {4},
pages = {714--720},
year = {2013},
url = {https://doi.org/10.1007/s10278-012-9557-4},
doi = {10.1007/S10278-012-9557-4},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/FaruqueRBN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/ChenLZKMSR13,
author = {Qiang Chen and
Theodore Leng and
Luoluo Zheng and
Lauren Kutzscher and
Jeffrey J. Ma and
Luis de Sisternes and
Daniel L. Rubin},
title = {Automated drusen segmentation and quantification in {SD-OCT} images},
journal = {Medical Image Anal.},
volume = {17},
number = {8},
pages = {1058--1072},
year = {2013},
url = {https://doi.org/10.1016/j.media.2013.06.003},
doi = {10.1016/J.MEDIA.2013.06.003},
timestamp = {Sun, 07 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mia/ChenLZKMSR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/YuTR13,
author = {Kun{-}Hsing Yu and
Shanshan Tuo and
Daniel L. Rubin},
title = {Classifying Benign and Malignant Lung Diseases by Applying Machine
Learning Methods to Microscopic Pathology Images},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-03-1.584514/f-003-1.584515/a-581-1.584521/a-588-1.584516},
timestamp = {Wed, 17 Apr 2024 11:47:55 +0200},
biburl = {https://dblp.org/rec/conf/amia/YuTR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icimth/BozkurtGR13,
author = {Selen Bozkurt and
Kemal Hakan G{\"{u}}lkesen and
Daniel L. Rubin},
editor = {John Mantas and
Arie Hasman},
title = {Annotation for Information Extraction from Mammography Reports},
booktitle = {Informatics, Management and Technology in Healthcare {[ICIMTH} 2013,
Athens, Greece, 5-7 July 2013]},
series = {Studies in Health Technology and Informatics},
volume = {190},
pages = {183--185},
publisher = {{IOS} Press},
year = {2013},
url = {https://doi.org/10.3233/978-1-61499-276-9-183},
doi = {10.3233/978-1-61499-276-9-183},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icimth/BozkurtGR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/micad/SafdariPRG13,
author = {Mustafa Safdari and
Raghav Pasari and
Daniel L. Rubin and
Hayit Greenspan},
editor = {Carol L. Novak and
Stephen R. Aylward},
title = {Image patch-based method for automated classification and detection
of focal liver lesions on {CT}},
booktitle = {Medical Imaging 2013: Computer-Aided Diagnosis, Lake Buena Vista (Orlando
Area), Florida, United States, 9-14 February 2013},
series = {{SPIE} Proceedings},
volume = {8670},
pages = {86700Y},
publisher = {{SPIE}},
year = {2013},
url = {https://doi.org/10.1117/12.2008624},
doi = {10.1117/12.2008624},
timestamp = {Mon, 07 May 2018 17:53:48 +0200},
biburl = {https://dblp.org/rec/conf/micad/SafdariPRG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/PerchaNLBR12,
author = {Bethany Percha and
Houssam Nassif and
Jafi A. Lipson and
Elizabeth S. Burnside and
Daniel L. Rubin},
title = {Automatic classification of mammography reports by {BI-RADS} breast
tissue composition class},
journal = {J. Am. Medical Informatics Assoc.},
volume = {19},
number = {5},
pages = {913--916},
year = {2012},
url = {https://doi.org/10.1136/amiajnl-2011-000607},
doi = {10.1136/AMIAJNL-2011-000607},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/PerchaNLBR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/ShoreRK12,
author = {Matthew W. Shore and
Daniel L. Rubin and
Charles E. Kahn Jr.},
title = {Integration of Imaging Signs into RadLex},
journal = {J. Digit. Imaging},
volume = {25},
number = {1},
pages = {50--55},
year = {2012},
url = {https://doi.org/10.1007/s10278-011-9386-x},
doi = {10.1007/S10278-011-9386-X},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/ShoreRK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/XuFBRN12,
author = {Jiajing Xu and
Jessica S. Faruque and
Christopher F. Beaulieu and
Daniel L. Rubin and
Sandy Napel},
title = {A Comprehensive Descriptor of Shape: Method and Application to Content-Based
Retrieval of Similar Appearing Lesions in Medical Images},
journal = {J. Digit. Imaging},
volume = {25},
number = {1},
pages = {121--128},
year = {2012},
url = {https://doi.org/10.1007/s10278-011-9388-8},
doi = {10.1007/S10278-011-9388-8},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/XuFBRN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/GimenezXLLBRN12,
author = {Francisco Gimenez and
Jiajing Xu and
Yi Liu and
Tiffany Ting Liu and
Christopher F. Beaulieu and
Daniel L. Rubin and
Sandy Napel},
title = {Automatic Annotation of Radiological Observations in Liver {CT} Images},
booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
Chicago, Illinois, USA, November 3-7, 2012},
publisher = {{AMIA}},
year = {2012},
url = {https://knowledge.amia.org/amia-55142-a2012a-1.636547/t-003-1.640625/f-001-1.640626/a-033-1.641139/a-034-1.641135},
timestamp = {Wed, 17 Apr 2024 11:48:03 +0200},
biburl = {https://dblp.org/rec/conf/amia/GimenezXLLBRN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wetice/SeriqueSWRM12,
author = {Kleberson J. A. Serique and
Alan Snyder and
Debra Willrett and
Daniel L. Rubin and
Dilvan A. Moreira},
editor = {Sumitra Reddy and
Khalil Drira},
title = {Using the Semantic Web and Web Apps to Connect Radiologists and Oncologists},
booktitle = {21st {IEEE} International Workshop on Enabling Technologies: Infrastructure
for Collaborative Enterprises, {WETICE} 2012, Toulouse, France, June
25-27, 2012},
pages = {480--485},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/WETICE.2012.45},
doi = {10.1109/WETICE.2012.45},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wetice/SeriqueSWRM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/KaoRRXFN12,
author = {Yi{-}Hao Kao and
Benjamin Van Roy and
Daniel L. Rubin and
Jiajing Xu and
Jessica S. Faruque and
Sandy Napel},
title = {A Hybrid Method for Distance Metric Learning},
journal = {CoRR},
volume = {abs/1206.7112},
year = {2012},
url = {http://arxiv.org/abs/1206.7112},
eprinttype = {arXiv},
eprint = {1206.7112},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/KaoRRXFN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1210-0866,
author = {Aaron Adcock and
Daniel L. Rubin and
Gunnar Carlsson},
title = {Classification of Hepatic Lesions using the Matching Metric},
journal = {CoRR},
volume = {abs/1210.0866},
year = {2012},
url = {http://arxiv.org/abs/1210.0866},
eprinttype = {arXiv},
eprint = {1210.0866},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1210-0866.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/TenenbaumWABDGKMMNNRSSWWABGMa11,
author = {Jessica D. Tenenbaum and
Patricia L. Whetzel and
Kent Anderson and
Charles D. Borromeo and
Ivo D. Dinov and
Davera Gabriel and
Beth A. Kirschner and
Barbara Mirel and
Timothy D. Morris and
Natasha Fridman Noy and
Csongor Nyulas and
David Rubenson and
Paul R. Saxman and
Harpreet Singh and
Nancy Whelan and
Zach Wright and
Brian D. Athey and
Michael J. Becich and
Geoffrey S. Ginsburg and
Mark A. Musen and
Kevin A. Smith and
Alice F. Tarantal and
Daniel L. Rubin and
Peter Lyster},
title = {The Biomedical Resource Ontology {(BRO)} to enable resource discovery
in clinical and translational research},
journal = {J. Biomed. Informatics},
volume = {44},
number = {1},
pages = {137--145},
year = {2011},
url = {https://doi.org/10.1016/j.jbi.2010.10.003},
doi = {10.1016/J.JBI.2010.10.003},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/TenenbaumWABDGKMMNNRSSWWABGMa11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/TuPCBRRS11,
author = {Samson W. Tu and
Mor Peleg and
Simona Carini and
Michael Bobak and
Jessica Ross and
Daniel L. Rubin and
Ida Sim},
title = {A practical method for transforming free-text eligibility criteria
into computable criteria},
journal = {J. Biomed. Informatics},
volume = {44},
number = {2},
pages = {239--250},
year = {2011},
url = {https://doi.org/10.1016/j.jbi.2010.09.007},
doi = {10.1016/J.JBI.2010.09.007},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/TuPCBRRS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/RubinFKSK11,
author = {Daniel L. Rubin and
Adam E. Flanders and
Woojin Kim and
Khan M. Siddiqui and
Charles E. Kahn},
title = {Ontology-Assisted Analysis of Web Queries to Determine the Knowledge
Radiologists Seek},
journal = {J. Digit. Imaging},
volume = {24},
number = {1},
pages = {160--164},
year = {2011},
url = {https://doi.org/10.1007/s10278-010-9289-2},
doi = {10.1007/S10278-010-9289-2},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/RubinFKSK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/AkgulRNBGA11,
author = {Ceyhun Burak Akg{\"{u}}l and
Daniel L. Rubin and
Sandy Napel and
Christopher F. Beaulieu and
Hayit Greenspan and
Burak Acar},
title = {Content-Based Image Retrieval in Radiology: Current Status and Future
Directions},
journal = {J. Digit. Imaging},
volume = {24},
number = {2},
pages = {208--222},
year = {2011},
url = {https://doi.org/10.1007/s10278-010-9290-9},
doi = {10.1007/S10278-010-9290-9},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/AkgulRNBGA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/WuDKR11,
author = {Andrew S. Wu and
Bao H. Do and
Jinsuh Kim and
Daniel L. Rubin},
title = {Evaluation of Negation and Uncertainty Detection and its Impact on
Precision and Recall in Search},
journal = {J. Digit. Imaging},
volume = {24},
number = {2},
pages = {234--242},
year = {2011},
url = {https://doi.org/10.1007/s10278-009-9250-4},
doi = {10.1007/S10278-009-9250-4},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/WuDKR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/KorenblumRNRB11,
author = {Daniel Korenblum and
Daniel L. Rubin and
Sandy Napel and
Cesar Rodriguez and
Christopher F. Beaulieu},
title = {Managing Biomedical Image Metadata for Search and Retrieval of Similar
Images},
journal = {J. Digit. Imaging},
volume = {24},
number = {4},
pages = {739--748},
year = {2011},
url = {https://doi.org/10.1007/s10278-010-9328-z},
doi = {10.1007/S10278-010-9328-Z},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/KorenblumRNRB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hisb/FaruqueRBRKTNS11,
author = {Jessica S. Faruque and
Daniel L. Rubin and
Christopher F. Beaulieu and
Jarrett Rosenberg and
Aya Kamaya and
Grace Tye and
Sandy Napel and
Ronald M. Summers},
title = {A Scalable Reference Standard of Visual Similarity for a Content-Based
Image Retrieval System},
booktitle = {2011 {IEEE} International Conference on Healthcare Informatics, Imaging
and Systems Biology, {HISB} 2011, San Jose, CA, USA, July 26-29, 2011},
pages = {158--165},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/HISB.2011.9},
doi = {10.1109/HISB.2011.9},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hisb/FaruqueRBRKTNS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hisb/GimenezXLLBRN11,
author = {Francisco Gimenez and
Jiajing Xu and
Yi Liu and
Tiffany Ting Liu and
Christopher F. Beaulieu and
Daniel L. Rubin and
Sandy Napel},
title = {On the Feasibility of Predicting Radiological Observations from Computational
Imaging Features of Liver Lesions in {CT} Scans},
booktitle = {2011 {IEEE} International Conference on Healthcare Informatics, Imaging
and Systems Biology, {HISB} 2011, San Jose, CA, USA, July 26-29, 2011},
pages = {346--350},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/HISB.2011.37},
doi = {10.1109/HISB.2011.37},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hisb/GimenezXLLBRN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fini/TurnerMBDLMR10,
author = {Jessica A. Turner and
Jos{\'{e}} L. V. Mejino Jr. and
James F. Brinkley and
Landon T. Detwiler and
Hyo Jong Lee and
Maryann E. Martone and
Daniel L. Rubin},
title = {Application of neuroanatomical ontologies for neuroimaging data annotation},
journal = {Frontiers Neuroinformatics},
volume = {4},
pages = {10},
year = {2010},
url = {https://doi.org/10.3389/fninf.2010.00010},
doi = {10.3389/FNINF.2010.00010},
timestamp = {Thu, 28 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fini/TurnerMBDLMR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/ChanninMKSR10,
author = {David S. Channin and
Pattanasak Mongkolwat and
Vladimir Kleper and
Kastubh Sepukar and
Daniel L. Rubin},
title = {The caBIG\({}^{\mbox{TM}}\) Annotation and Image Markup Project},
journal = {J. Digit. Imaging},
volume = {23},
number = {2},
pages = {217--225},
year = {2010},
url = {https://doi.org/10.1007/s10278-009-9193-9},
doi = {10.1007/S10278-009-9193-9},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/ChanninMKSR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tbe/CooperKGWCPWSMFRMKMBS10,
author = {Lee A. D. Cooper and
Jun Kong and
David A. Gutman and
Fusheng Wang and
Sharath R. Cholleti and
Tony C. Pan and
Patrick M. Widener and
Ashish Sharma and
Tom Mikkelsen and
Adam E. Flanders and
Daniel L. Rubin and
Erwin G. Van Meir and
Tahsin M. Kur{\c{c}} and
Carlos Sanchez Moreno and
Daniel J. Brat and
Joel H. Saltz},
title = {An Integrative Approach for In Silico Glioma Research},
journal = {{IEEE} Trans. Biomed. Eng.},
volume = {57},
number = {10},
pages = {2617--2621},
year = {2010},
url = {https://doi.org/10.1109/TBME.2010.2060338},
doi = {10.1109/TBME.2010.2060338},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tbe/CooperKGWCPWSMFRMKMBS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cbms/2010,
editor = {Tharam S. Dillon and
Daniel L. Rubin and
William M. Gallagher and
Amandeep S. Sidhu and
Alexey Tsymbal},
title = {{IEEE} 23rd International Symposium on Computer-Based Medical Systems
{(CBMS} 2010), Perth, Australia, October 12-15, 2010},
publisher = {{IEEE} Computer Society},
year = {2010},
url = {https://ieeexplore.ieee.org/xpl/conhome/6032141/proceeding},
isbn = {978-1-4244-9167-4},
timestamp = {Wed, 16 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cbms/2010.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RubinTHMK09,
author = {Daniel L. Rubin and
Ion{-}Florin Talos and
Michael Halle and
Mark A. Musen and
Ron Kikinis},
title = {Computational neuroanatomy: ontology-based representation of neural
components and connectivity},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-2}},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S2-S3},
doi = {10.1186/1471-2105-10-S2-S3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RubinTHMK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShahBJRCM09,
author = {Nigam H. Shah and
Nipun Bhatia and
Cl{\'{e}}ment Jonquet and
Daniel L. Rubin and
Annie P. Chiang and
Mark A. Musen},
title = {Comparison of concept recognizers for building the Open Biomedical
Annotator},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-9}},
pages = {14},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S9-S14},
doi = {10.1186/1471-2105-10-S9-S14},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShahBJRCM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/expert/RubinMKSC09,
author = {Daniel L. Rubin and
Pattanasak Mongkolwat and
Vladimir Kleper and
Kaustubh Supekar and
David S. Channin},
title = {Annotation and Image Markup: Accessing and Interoperating with the
Semantic Content in Medical Imaging},
journal = {{IEEE} Intell. Syst.},
volume = {24},
number = {1},
pages = {57--65},
year = {2009},
url = {https://doi.org/10.1109/MIS.2009.3},
doi = {10.1109/MIS.2009.3},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/expert/RubinMKSC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/JrR09,
author = {Charles E. Kahn Jr. and
Daniel L. Rubin},
title = {Research Paper: Automated Semantic Indexing of Figure Captions to
Improve Radiology Image Retrieval},
journal = {J. Am. Medical Informatics Assoc.},
volume = {16},
number = {3},
pages = {380--386},
year = {2009},
url = {https://doi.org/10.1197/jamia.M2945},
doi = {10.1197/JAMIA.M2945},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/JrR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NoySWDDGJRSCM09,
author = {Natalya Fridman Noy and
Nigam H. Shah and
Patricia L. Whetzel and
Benjamin Dai and
Michael Dorf and
Nicholas Griffith and
Cl{\'{e}}ment Jonquet and
Daniel L. Rubin and
Margaret{-}Anne D. Storey and
Christopher G. Chute and
Mark A. Musen},
title = {BioPortal: ontologies and integrated data resources at the click of
a mouse},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Web-Server-Issue},
pages = {170--173},
year = {2009},
url = {https://doi.org/10.1093/nar/gkp440},
doi = {10.1093/NAR/GKP440},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NoySWDDGJRSCM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LevyOR09,
author = {Mia A. Levy and
Martin J. O'Connor and
Daniel L. Rubin},
title = {Semantic Reasoning with Image Annotations for Tumor Assessment},
booktitle = {{AMIA} 2009, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2009},
publisher = {{AMIA}},
year = {2009},
url = {https://knowledge.amia.org/amia-55142-a2009a-1.626575/t-001-1.627318/f-001-1.627319/a-070-1.627542/a-071-1.627539},
timestamp = {Wed, 17 Apr 2024 11:48:10 +0200},
biburl = {https://dblp.org/rec/conf/amia/LevyOR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/RubinSN08,
author = {Daniel L. Rubin and
Nigam Shah and
Natalya Fridman Noy},
title = {Biomedical ontologies: a functional perspective},
journal = {Briefings Bioinform.},
volume = {9},
number = {1},
pages = {75--90},
year = {2008},
url = {https://doi.org/10.1093/bib/bbm059},
doi = {10.1093/BIB/BBM059},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/RubinSN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PoulterRAS08,
author = {Graham L. Poulter and
Daniel L. Rubin and
Russ B. Altman and
Cathal Seoighe},
title = {MScanner: a classifier for retrieving Medline citations},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-108},
doi = {10.1186/1471-2105-9-108},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PoulterRAS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/TalosRHMK08,
author = {Ion{-}Florin Talos and
Daniel L. Rubin and
Michael Halle and
Mark A. Musen and
Ron Kikinis},
title = {A prototype symbolic model of canonical functional neuroanatomy of
the motor system},
journal = {J. Biomed. Informatics},
volume = {41},
number = {2},
pages = {251--263},
year = {2008},
url = {https://doi.org/10.1016/j.jbi.2007.11.003},
doi = {10.1016/J.JBI.2007.11.003},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/TalosRHMK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/Rubin08,
author = {Daniel L. Rubin},
title = {Creating and Curating a Terminology for Radiology: Ontology Modeling
and Analysis},
journal = {J. Digit. Imaging},
volume = {21},
number = {4},
pages = {355--362},
year = {2008},
url = {https://doi.org/10.1007/s10278-007-9073-0},
doi = {10.1007/S10278-007-9073-0},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/Rubin08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ni/BugAGGFLLRSTM08,
author = {William J. Bug and
Giorgio A. Ascoli and
Jeffrey S. Grethe and
Amarnath Gupta and
Christine Fennema{-}Notestine and
Angela R. Laird and
Stephen D. Larson and
Daniel L. Rubin and
Gordon M. Shepherd and
Jessica A. Turner and
Maryann E. Martone},
title = {The {NIFSTD} and BIRNLex Vocabularies: Building Comprehensive Ontologies
for Neuroscience},
journal = {Neuroinformatics},
volume = {6},
number = {3},
pages = {175--194},
year = {2008},
url = {https://doi.org/10.1007/s12021-008-9032-z},
doi = {10.1007/S12021-008-9032-Z},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ni/BugAGGFLLRSTM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/SupekarMRMG08,
author = {Kaustubh Supekar and
Vinod Menon and
Daniel L. Rubin and
Mark A. Musen and
Michael D. Greicius},
title = {Network Analysis of Intrinsic Functional Brain Connectivity in Alzheimer's
Disease},
journal = {PLoS Comput. Biol.},
volume = {4},
number = {6},
year = {2008},
url = {https://doi.org/10.1371/journal.pcbi.1000100},
doi = {10.1371/JOURNAL.PCBI.1000100},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/SupekarMRMG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ws/NoyR08,
author = {Natalya Fridman Noy and
Daniel L. Rubin},
title = {Translating the Foundational Model of Anatomy into {OWL}},
journal = {J. Web Semant.},
volume = {6},
number = {2},
pages = {133--136},
year = {2008},
url = {https://doi.org/10.1016/j.websem.2007.12.001},
doi = {10.1016/J.WEBSEM.2007.12.001},
timestamp = {Tue, 29 Jan 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ws/NoyR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaaiss/RubinMKM08,
author = {Daniel L. Rubin and
Dilvan A. Moreira and
Pradip Kanjamala and
Mark A. Musen},
title = {BioPortal: {A} Web Portal to Biomedical Ontologies},
booktitle = {Symbiotic Relationships between Semantic Web and Knowledge Engineering,
Papers from the 2008 {AAAI} Spring Symposium, Technical Report SS-08-07,
Stanford, California, USA, March 26-28, 2008},
pages = {74--77},
publisher = {{AAAI}},
year = {2008},
url = {http://www.aaai.org/Library/Symposia/Spring/2008/ss08-07-011.php},
timestamp = {Fri, 17 Feb 2012 14:19:28 +0100},
biburl = {https://dblp.org/rec/conf/aaaiss/RubinMKM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaaiss/RubinMKSC08,
author = {Daniel L. Rubin and
Pattanasak Mongkolwat and
Vladimir Kleper and
Kaustubh Supekar and
David S. Channin},
title = {Medical Imaging on the Semantic Web: Annotation and Image Markup},
booktitle = {Semantic Scientific Knowledge Integration, Papers from the 2008 {AAAI}
Spring Symposium, Technical Report SS-08-05, Stanford, California,
USA, March 26-28, 2008},
pages = {93--98},
publisher = {{AAAI}},
year = {2008},
url = {http://www.aaai.org/Library/Symposia/Spring/2008/ss08-05-019.php},
timestamp = {Fri, 17 Feb 2012 16:44:19 +0100},
biburl = {https://dblp.org/rec/conf/aaaiss/RubinMKSC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LevyR08,
author = {Mia A. Levy and
Daniel L. Rubin},
title = {Tool Support to Enable Evaluation of the Clinical Response to Treatment},
booktitle = {{AMIA} 2008, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 8-12, 2008},
publisher = {{AMIA}},
year = {2008},
url = {https://knowledge.amia.org/amia-55142-a2008a-1.625176/t-001-1.626020/f-001-1.626021/a-082-1.626318/a-083-1.626315},
timestamp = {Wed, 17 Apr 2024 11:48:12 +0200},
biburl = {https://dblp.org/rec/conf/amia/LevyR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiuKDR08,
author = {Yueyi I. Liu and
Aya Kamaya and
Terry S. Desser and
Daniel L. Rubin},
title = {A Bayesian Classifier for Differentiating Benign versus Malignant
Thyroid Nodules using Sonographic Features},
booktitle = {{AMIA} 2008, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 8-12, 2008},
publisher = {{AMIA}},
year = {2008},
url = {https://knowledge.amia.org/amia-55142-a2008a-1.625176/t-001-1.626020/f-001-1.626021/a-086-1.626306/a-087-1.626303},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/LiuKDR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MejinoRB08,
author = {Jos{\'{e}} L. V. Mejino Jr. and
Daniel L. Rubin and
James F. Brinkley},
title = {FMA-RadLex: An Application Ontology of Radiological Anatomy derived
from the Foundational Model of Anatomy Reference Ontology},
booktitle = {{AMIA} 2008, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 8-12, 2008},
publisher = {{AMIA}},
year = {2008},
url = {https://knowledge.amia.org/amia-55142-a2008a-1.625176/t-001-1.626020/f-001-1.626021/a-096-1.626276/a-097-1.626273},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/MejinoRB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RubinRSB08,
author = {Daniel L. Rubin and
Cesar Rodriguez and
Priyanka Shah and
Christopher F. Beaulieu},
title = {\emph{i}Pad: Semantic Annotation and Markup of Radiological Images},
booktitle = {{AMIA} 2008, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 8-12, 2008},
publisher = {{AMIA}},
year = {2008},
url = {https://knowledge.amia.org/amia-55142-a2008a-1.625176/t-001-1.626020/f-001-1.626021/a-129-1.626177/a-130-1.626174},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RubinRSB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/NoySDDGJMRYM08,
author = {Natalya Fridman Noy and
Nigam Shah and
Benjamin Dai and
Michael Dorf and
Nicholas Griffith and
Cl{\'{e}}ment Jonquet and
Michael Montegut and
Daniel L. Rubin and
Cherie Youn and
Mark A. Musen},
editor = {Christian Bizer and
Anupam Joshi},
title = {BioPortal: {A} Web Repository for Biomedical Ontologies and Data Resources},
booktitle = {Proceedings of the Poster and Demonstration Session at the 7th International
Semantic Web Conference (ISWC2008), Karlsruhe, Germany, October 28,
2008},
series = {{CEUR} Workshop Proceedings},
volume = {401},
publisher = {CEUR-WS.org},
year = {2008},
url = {https://ceur-ws.org/Vol-401/iswc2008pd\_submission\_25.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:06 +0100},
biburl = {https://dblp.org/rec/conf/semweb/NoySDDGJMRYM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ShahREMM07,
author = {Nigam H. Shah and
Daniel L. Rubin and
Inigo Espinosa and
Kelli Montgomery and
Mark A. Musen},
title = {Annotation and query of tissue microarray data using the {NCI} Thesaurus},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-296},
doi = {10.1186/1471-2105-8-296},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ShahREMM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LevyGTGR07,
author = {Mia A. Levy and
Ankit Garg and
Aaron Tam and
Yael Garten and
Daniel L. Rubin},
title = {LesionViewer: {A} Tool for Tracking Cancer Lesions Over Time},
booktitle = {{AMIA} 2007, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 10-14, 2007},
publisher = {{AMIA}},
year = {2007},
url = {https://knowledge.amia.org/amia-55142-a2007a-1.623841/t-001-1.624626/f-001-1.624627/a-083-1.624879/a-084-1.624876},
timestamp = {Wed, 17 Apr 2024 11:48:14 +0200},
biburl = {https://dblp.org/rec/conf/amia/LevyGTGR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dils/LeeRSSRN07,
author = {Woei{-}Jyh Lee and
Louiqa Raschid and
Padmini Srinivasan and
Nigam Shah and
Daniel L. Rubin and
Natasha Fridman Noy},
editor = {Sarah Cohen Boulakia and
Val Tannen},
title = {Using Annotations from Controlled Vocabularies to Find Meaningful
Associations},
booktitle = {Data Integration in the Life Sciences, 4th International Workshop,
{DILS} 2007, Philadelphia, PA, USA, June 27-29, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4544},
pages = {247--263},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-73255-6\_20},
doi = {10.1007/978-3-540-73255-6\_20},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dils/LeeRSSRN07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/SupekarRNM07,
author = {Kaustubh Supekar and
Daniel L. Rubin and
Natasha F. Noy and
Mark A. Musen},
editor = {Klaus A. Kuhn and
James R. Warren and
Tze{-}Yun Leong},
title = {Knowledge Zone: {A} Public Repository of Peer-Reviewed Biomedical
Ontologies},
booktitle = {{MEDINFO} 2007 - Proceedings of the 12th World Congress on Health
(Medical) Informatics - Building Sustainable Health Systems, 20-24
August, 2007, Brisbane, Australia},
series = {Studies in Health Technology and Informatics},
volume = {129},
pages = {812--816},
publisher = {{IOS} Press},
year = {2007},
url = {https://doi.org/10.3233/978-1-58603-774-1-812},
doi = {10.3233/978-1-58603-774-1-812},
timestamp = {Mon, 22 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/SupekarRNM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/artmed/RubinDBGDM06,
author = {Daniel L. Rubin and
Olivier Dameron and
Yasser Bashir and
David Grossman and
Parvati Dev and
Mark A. Musen},
title = {Using ontologies linked with geometric models to reason about penetrating
injuries},
journal = {Artif. Intell. Medicine},
volume = {37},
number = {3},
pages = {167--176},
year = {2006},
url = {https://doi.org/10.1016/j.artmed.2006.03.006},
doi = {10.1016/J.ARTMED.2006.03.006},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/artmed/RubinDBGDM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdi/KahnCR06,
author = {Charles E. Kahn and
David S. Channin and
Daniel L. Rubin},
title = {An Ontology for {PACS} Integration},
journal = {J. Digit. Imaging},
volume = {19},
number = {4},
pages = {316--327},
year = {2006},
url = {https://doi.org/10.1007/s10278-006-0627-3},
doi = {10.1007/S10278-006-0627-3},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdi/KahnCR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RubinGNCBM06,
author = {Daniel L. Rubin and
David Grossman and
Maxwell Lewis Neal and
Daniel L. Cook and
James B. Bassingthwaighte and
Mark A. Musen},
title = {Ontology-Based Representation of Simulation Models of Physiology},
booktitle = {{AMIA} 2006, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 11-15, 2006},
publisher = {{AMIA}},
year = {2006},
url = {https://knowledge.amia.org/amia-55142-a2006a-1.620145/t-001-1.623243/f-001-1.623244/a-133-1.623348/a-134-1.623345},
timestamp = {Wed, 17 Apr 2024 11:48:16 +0200},
biburl = {https://dblp.org/rec/conf/amia/RubinGNCBM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ShahRSM06,
author = {Nigam H. Shah and
Daniel L. Rubin and
Kaustubh S. Supekar and
Mark A. Musen},
title = {Ontology-based Annotation and Query of Tissue Microarray Data},
booktitle = {{AMIA} 2006, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 11-15, 2006},
publisher = {{AMIA}},
year = {2006},
url = {https://knowledge.amia.org/amia-55142-a2006a-1.620145/t-001-1.623243/f-001-1.623244/a-142-1.623321/a-143-1.623318},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/ShahRSM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/RubinTKA05,
author = {Daniel L. Rubin and
Caroline F. Thorn and
Teri E. Klein and
Russ B. Altman},
title = {Application of Information Technology: {A} Statistical Approach to
Scanning the Biomedical Literature for Pharmacogenetics Knowledge},
journal = {J. Am. Medical Informatics Assoc.},
volume = {12},
number = {2},
pages = {121--129},
year = {2005},
url = {https://doi.org/10.1197/jamia.M1640},
doi = {10.1197/JAMIA.M1640},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/RubinTKA05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/PelegRA05,
author = {Mor Peleg and
Daniel L. Rubin and
Russ B. Altman},
title = {Research Paper: Using Petri Net Tools to Study Properties and Dynamics
of Biological Systems},
journal = {J. Am. Medical Informatics Assoc.},
volume = {12},
number = {2},
pages = {181--199},
year = {2005},
url = {https://doi.org/10.1197/jamia.M1637},
doi = {10.1197/JAMIA.M1637},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/PelegRA05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/DameronRM05,
author = {Olivier Dameron and
Daniel L. Rubin and
Mark A. Musen},
title = {Challenges in Converting Frame-Based Ontology into {OWL:} the Foundational
Model of Anatomy Case-Study},
booktitle = {{AMIA} 2005, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, October 22-26, 2005},
publisher = {{AMIA}},
year = {2005},
url = {https://knowledge.amia.org/amia-55142-a2005a-1.613296/t-001-1.616182/f-001-1.616183/a-036-1.616582/a-037-1.616579},
timestamp = {Wed, 17 Apr 2024 11:48:22 +0200},
biburl = {https://dblp.org/rec/conf/amia/DameronRM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RubinDM05,
author = {Daniel L. Rubin and
Olivier Dameron and
Mark A. Musen},
title = {Use of Description Logic Classification to Reason about Consequences
of Penetrating Injuries},
booktitle = {{AMIA} 2005, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, October 22-26, 2005},
publisher = {{AMIA}},
year = {2005},
url = {https://knowledge.amia.org/amia-55142-a2005a-1.613296/t-001-1.616182/f-001-1.616183/a-130-1.616299/a-131-1.616296},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RubinDM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RubinKFDM05,
author = {Daniel L. Rubin and
Holger Knublauch and
Ray W. Fergerson and
Olivier Dameron and
Mark A. Musen},
title = {Prot{\'{e}}g{\'{e}}-OWL: Creating Ontology-Driven Reasoning
Applications with the Web Ontology Language},
booktitle = {{AMIA} 2005, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, October 22-26, 2005},
publisher = {{AMIA}},
year = {2005},
url = {https://knowledge.amia.org/amia-55142-a2005a-1.613296/t-004-1.615234/f-001-1.615235/a-475-1.615248/a-476-1.615245},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RubinKFDM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/expert/NoyRM04,
author = {Natalya Fridman Noy and
Daniel L. Rubin and
Mark A. Musen},
title = {Making Biomedical Ontologies and Ontology Repositories Work},
journal = {{IEEE} Intell. Syst.},
volume = {19},
number = {6},
pages = {78--81},
year = {2004},
url = {https://doi.org/10.1109/MIS.2004.67},
doi = {10.1109/MIS.2004.67},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/expert/NoyRM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cars/BurnsideRS04,
author = {Elizabeth S. Burnside and
Daniel L. Rubin and
Ross D. Shachter},
editor = {Heinz U. Lemke and
Kiyonari Inamura and
Kunio Doi and
Michael W. Vannier and
Allan G. Farman and
Johan H. C. Reiber},
title = {Improving a Bayesian network's ability to predict the probability
of malignancy of microcalcifications on mammography},
booktitle = {{CARS} 2004. Computer Assisted Radiology and Surgery. Proceedings
of the 18th International Congress and Exhibition, Chicago, USA, June
23-26, 2004},
series = {International Congress Series},
volume = {1268},
pages = {1021--1026},
publisher = {Elsevier},
year = {2004},
timestamp = {Mon, 10 Jan 2005 11:17:57 +0100},
biburl = {https://dblp.org/rec/conf/cars/BurnsideRS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/BurnsideRS04,
author = {Elizabeth S. Burnside and
Daniel L. Rubin and
Ross D. Shachter},
editor = {Marius Fieschi and
Enrico W. Coiera and
Yu{-}Chuan (Jack) Li},
title = {Using a Bayesian Network to Predict the Probability and Type of Breast
Cancer Represented by Microcalcifications on Mammography},
booktitle = {{MEDINFO} 2004 - Proceedings of the 11th World Congress on Medical
Informatics, San Francisco, California, USA, September 7-11, 2004},
series = {Studies in Health Technology and Informatics},
volume = {107},
pages = {13--17},
publisher = {{IOS} Press},
year = {2004},
url = {https://doi.org/10.3233/978-1-60750-949-3-13},
doi = {10.3233/978-1-60750-949-3-13},
timestamp = {Wed, 17 Aug 2022 16:35:51 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/BurnsideRS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/RubinCWCKA04,
author = {Daniel L. Rubin and
Michelle Whirl Carrillo and
Mark Woon and
John Conroy and
Teri E. Klein and
Russ B. Altman},
editor = {Marius Fieschi and
Enrico W. Coiera and
Yu{-}Chuan (Jack) Li},
title = {A Resource to Acquire and Summarize Pharmacogenetics Knowledge in
the Literature},
booktitle = {{MEDINFO} 2004 - Proceedings of the 11th World Congress on Medical
Informatics, San Francisco, California, USA, September 7-11, 2004},
series = {Studies in Health Technology and Informatics},
volume = {107},
pages = {793--797},
publisher = {{IOS} Press},
year = {2004},
url = {https://doi.org/10.3233/978-1-60750-949-3-793},
doi = {10.3233/978-1-60750-949-3-793},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/RubinCWCKA04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HewettORESAK03,
author = {Micheal Hewett and
Diane E. Oliver and
Daniel L. Rubin and
Katrina L. Easton and
Joshua M. Stuart and
Russ B. Altman and
Teri E. Klein},
title = {PharmGKB: the Pharmacogenetics Knowledge Base},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {163--165},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.163},
doi = {10.1093/NAR/30.1.163},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/HewettORESAK03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/RubinSOHA02,
author = {Daniel L. Rubin and
Farhad Shafa and
Diane E. Oliver and
Micheal Hewett and
Russ B. Altman},
title = {Representing genetic sequence data for pharmacogenomics: an evolutionary
approach using ontological and relational models},
booktitle = {Proceedings of the Tenth International Conference on Intelligent Systems
for Molecular Biology, August 3-7, 2002, Edmonton, Alberta, Canada},
pages = {207--215},
year = {2002},
timestamp = {Wed, 29 Jun 2011 14:55:41 +0200},
biburl = {https://dblp.org/rec/conf/ismb/RubinSOHA02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/OliverRSHKA02,
author = {Diane E. Oliver and
Daniel L. Rubin and
Joshua M. Stuart and
Micheal Hewett and
Teri E. Klein and
Russ B. Altman},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Ontology Development for a Pharmacogenetics Knowledge Base},
booktitle = {Proceedings of the 7th Pacific Symposium on Biocomputing, {PSB} 2002,
Lihue, Hawaii, USA, January 3-7, 2002},
pages = {65--76},
year = {2002},
url = {http://psb.stanford.edu/psb-online/proceedings/psb02/oliver.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/OliverRSHKA02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/RubinHOKA02,
author = {Daniel L. Rubin and
Micheal Hewett and
Diane E. Oliver and
Teri E. Klein and
Russ B. Altman},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Automating Data Acquisition into Ontologies from Pharmacogenetics
Relational Data Sources Using Declarative Object Definitions and {XML}},
booktitle = {Proceedings of the 7th Pacific Symposium on Biocomputing, {PSB} 2002,
Lihue, Hawaii, USA, January 3-7, 2002},
pages = {88--99},
year = {2002},
url = {http://psb.stanford.edu/psb-online/proceedings/psb02/rubin.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/RubinHOKA02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/BurnsideRS00,
author = {Elizabeth S. Burnside and
Daniel L. Rubin and
Ross D. Shachter},
title = {A Bayesian network for mammography},
booktitle = {{AMIA} 2000, American Medical Informatics Association Annual Symposium,
Los Angeles, CA, USA, November 4-8, 2000},
publisher = {{AMIA}},
year = {2000},
url = {https://knowledge.amia.org/amia-55142-a2000a-1.606968/t-001-1.609408/f-001-1.609409/a-021-1.609914/a-022-1.609911},
timestamp = {Wed, 17 Apr 2024 11:48:44 +0200},
biburl = {https://dblp.org/rec/conf/amia/BurnsideRS00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RubinGM00,
author = {Daniel L. Rubin and
John H. Gennari and
Mark A. Musen},
title = {Knowledge representation and tool support for critiquing clinical
trial protocols},
booktitle = {{AMIA} 2000, American Medical Informatics Association Annual Symposium,
Los Angeles, CA, USA, November 4-8, 2000},
publisher = {{AMIA}},
year = {2000},
url = {https://knowledge.amia.org/amia-55142-a2000a-1.606968/t-001-1.609408/f-001-1.609409/a-146-1.609539/a-147-1.609536},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RubinGM00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RubinGSYKMS99,
author = {Daniel L. Rubin and
John H. Gennari and
Sandra Srinivas and
Allen Yuen and
Herbert Kaizer and
Mark A. Musen and
John S. Silva},
title = {Tool support for authoring eligibility criteria for cancer trials},
booktitle = {{AMIA} 1999, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 6-10, 1999},
publisher = {{AMIA}},
year = {1999},
url = {https://knowledge.amia.org/amia-55142-a1999a-1.591078/t-001-1.593353/f-001-1.593354/a-074-1.593745/a-075-1.593742},
timestamp = {Wed, 17 Apr 2024 11:48:49 +0200},
biburl = {https://dblp.org/rec/conf/amia/RubinGSYKMS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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