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ORCIDBibTeX records: Isabel Rojas
@article{DBLP:journals/nar/WittigKGRSJAWSMKBWRM12,
author = {Ulrike Wittig and
Renate Kania and
Martin Golebiewski and
Maja Rey and
Lei Shi and
Lenneke Jong and
Enkhjargal Algaa and
Andreas Weidemann and
Heidrun Sauer{-}Danzwith and
Saqib Mir and
Olga Krebs and
Meik Bittkowski and
Elina Wetsch and
Isabel Rojas and
Wolfgang M{\"{u}}ller},
title = {{SABIO-RK} - database for biochemical reaction kinetics},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {790--796},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr1046},
doi = {10.1093/NAR/GKR1046},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WittigKGRSJAWSMKBWRM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/procedia/MullerREHS11,
author = {Wolfgang M{\"{u}}ller and
Isabel Rojas and
Andreas Eberhart and
Peter Haase and
Michael Schmidt},
editor = {Mitsuhisa Sato and
Satoshi Matsuoka and
Peter M. A. Sloot and
G. Dick van Albada and
Jack J. Dongarra},
title = {{A-R-E:} The Author-Review-Execute Environment},
booktitle = {Proceedings of the International Conference on Computational Science,
{ICCS} 2011, Nanyang Technological University, Singapore, 1-3 June,
2011},
series = {Procedia Computer Science},
volume = {4},
pages = {627--636},
publisher = {Elsevier},
year = {2011},
url = {https://doi.org/10.1016/j.procs.2011.04.066},
doi = {10.1016/J.PROCS.2011.04.066},
timestamp = {Thu, 08 Jul 2021 16:04:01 +0200},
biburl = {https://dblp.org/rec/journals/procedia/MullerREHS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/esws/MirSR10,
author = {Saqib Mir and
Steffen Staab and
Isabel Rojas},
editor = {Lora Aroyo and
Grigoris Antoniou and
Eero Hyv{\"{o}}nen and
Annette ten Teije and
Heiner Stuckenschmidt and
Liliana Cabral and
Tania Tudorache},
title = {An Unsupervised Approach for Acquiring Ontologies and {RDF} Data from
Online Life Science Databases},
booktitle = {The Semantic Web: Research and Applications, 7th Extended Semantic
Web Conference, {ESWC} 2010, Heraklion, Crete, Greece, May 30 - June
3, 2010, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {6089},
pages = {319--333},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-13489-0\_22},
doi = {10.1007/978-3-642-13489-0\_22},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/esws/MirSR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gi/WittigKRM10,
author = {Ulrike Wittig and
Renate Kania and
Isabel Rojas and
Wolfgang M{\"{u}}ller},
editor = {Klaus{-}Peter F{\"{a}}hnrich and
Bogdan Franczyk},
title = {Herausforderungen bei der Extraktion von biochemischen Daten aus der
Literatur},
booktitle = {40. Jahrestagung der Gesellschaft f{\"{u}}r Informatik, Service
Science - Neue Perspektiven f{\"{u}}r die Informatik, {INFORMATIK}
2010, Leipzig, Germany, September 27 - October 1, 2010, Band 2},
series = {{LNI}},
volume = {{P-176}},
pages = {752--757},
publisher = {{GI}},
year = {2010},
url = {https://dl.gi.de/handle/20.500.12116/19317},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gi/WittigKRM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/btw/MirSR09,
author = {Saqib Mir and
Steffen Staab and
Isabel Rojas},
editor = {Johann Christoph Freytag and
Thomas Ruf and
Wolfgang Lehner and
Gottfried Vossen},
title = {Web-Prospector - An Automatic, Site-Wide Wrapper Induction Approach
for Scientific Deep-Web Databases},
booktitle = {Datenbanksysteme in Business, Technologie und Web {(BTW} 2009), 13.
Fachtagung des GI-Fachbereichs "Datenbanken und Informationssysteme"
(DBIS), Proceedings, 2.-6. M{\"{a}}rz 2009, M{\"{u}}nster,
Germany},
series = {{LNI}},
volume = {{P-144}},
pages = {87--106},
publisher = {{GI}},
year = {2009},
url = {https://dl.gi.de/handle/20.500.12116/20495},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/btw/MirSR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dils/MirSR09,
author = {Saqib Mir and
Steffen Staab and
Isabel Rojas},
editor = {Norman W. Paton and
Paolo Missier and
Cornelia Hedeler},
title = {Site-Wide Wrapper Induction for Life Science Deep Web Databases},
booktitle = {Data Integration in the Life Sciences, 6th International Workshop,
{DILS} 2009, Manchester, UK, July 20-22, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5647},
pages = {96--112},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02879-3\_9},
doi = {10.1007/978-3-642-02879-3\_9},
timestamp = {Tue, 14 May 2019 10:00:43 +0200},
biburl = {https://dblp.org/rec/conf/dils/MirSR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gi/EngelkenGBHSWMRR09,
author = {Henriette Engelken and
Martin Golebiewski and
Meik Bittkowski and
Fritz Hamm and
Jasmin Saric and
Ulrike Wittig and
Wolfgang M{\"{u}}ller and
Uwe Reyle and
Isabel Rojas},
editor = {Stefan Fischer and
Erik Maehle and
R{\"{u}}diger Reischuk},
title = {Flache und semantische Verarbeitung von Namen biochemischer Verbindungen},
booktitle = {39. Jahrestagung der Gesellschaft f{\"{u}}r Informatik, Im Focus
das Leben, {INFORMATIK} 2009, L{\"{u}}beck, Germany, September
28 - October 2, 2009, Proceedings},
series = {{LNI}},
volume = {{P-154}},
pages = {687--692},
publisher = {{GI}},
year = {2009},
url = {https://dl.gi.de/handle/20.500.12116/31235},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gi/EngelkenGBHSWMRR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeidemannRSSGGSSBRWK08,
author = {Andreas Weidemann and
Stefan Richter and
Matthias Stein and
Sven Sahle and
Ralph Gauges and
Razif R. Gabdoulline and
Irina Surovtsova and
Nils Semmelrock and
Bruno Besson and
Isabel Rojas and
Rebecca C. Wade and
Ursula Kummer},
title = {{SYCAMORE} - a systems biology computational analysis and modeling
research environment},
journal = {Bioinform.},
volume = {24},
number = {12},
pages = {1463--1464},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn207},
doi = {10.1093/BIOINFORMATICS/BTN207},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WeidemannRSSGGSSBRWK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/faia/CiaramitaGRSR08,
author = {Massimiliano Ciaramita and
Aldo Gangemi and
Esther Ratsch and
Jasmin Saric and
Isabel Rojas},
editor = {Paul Buitelaar and
Philipp Cimiano},
title = {Unsupervised Learning of Semantic Relations for Molecular Biology
Ontologies},
booktitle = {Ontology Learning and Population: Bridging the Gap between Text and
Knowledge},
series = {Frontiers in Artificial Intelligence and Applications},
volume = {167},
pages = {91--104},
publisher = {{IOS} Press},
year = {2008},
url = {http://www.booksonline.iospress.nl/Content/View.aspx?piid=8219},
timestamp = {Mon, 11 Jul 2016 11:01:40 +0200},
biburl = {https://dblp.org/rec/series/faia/CiaramitaGRSR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GolebiewskiMKKWWR07,
author = {Martin Golebiewski and
Saqib Mir and
Renate Kania and
Olga Krebs and
Andreas Weidemann and
Ulrike Wittig and
Isabel Rojas},
title = {Integration of {SABIO-RK} in workbenches for kinetic model design},
journal = {{BMC} Syst. Biol.},
volume = {1},
number = {{S-1}},
pages = {P4},
year = {2007},
url = {https://doi.org/10.1186/1752-0509-1-S1-P4},
doi = {10.1186/1752-0509-1-S1-P4},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/GolebiewskiMKKWWR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/RojasGKKMWW07,
author = {Isabel Rojas and
Martin Golebiewski and
Renate Kania and
Olga Krebs and
Saqib Mir and
Andreas Weidemann and
Ulrike Wittig},
title = {{SABIO-RK:} a database for biochemical reactions and their kinetics},
journal = {{BMC} Syst. Biol.},
volume = {1},
number = {{S-1}},
pages = {S6},
year = {2007},
url = {https://doi.org/10.1186/1752-0509-1-S1-S6},
doi = {10.1186/1752-0509-1-S1-S6},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/RojasGKKMWW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/RojasW07,
author = {Isabel Rojas and
Ulrike Wittig},
title = {Workshop on "Storage and Annotation of Reaction Kinetics Data",
Villa Bosch in Heidelberg, May 21-23, 2007},
journal = {Silico Biol.},
volume = {7},
number = {6},
pages = {1--2},
year = {2007},
url = {http://content.iospress.com/articles/in-silico-biology/isb00300},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/RojasW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/RojasGKKMWW07,
author = {Isabel Rojas and
Martin Golebiewski and
Renate Kania and
Olga Krebs and
Saqib Mir and
Andreas Weidemann and
Ulrike Wittig},
title = {Storing and Annotating of Kinetic Data},
journal = {Silico Biol.},
volume = {7},
number = {6},
pages = {37--44},
year = {2007},
url = {http://content.iospress.com/articles/in-silico-biology/isb00304},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/RojasGKKMWW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KrebsGKMSWWR07,
author = {Olga Krebs and
Martin Golebiewski and
Renate Kania and
Saqib Mir and
Jasmin Saric and
Andreas Weidemann and
Ulrike Wittig and
Isabel Rojas},
title = {{SABIO-RK:} {A} data warehouse for biochemical reactions and their
kinetics},
journal = {J. Integr. Bioinform.},
volume = {4},
number = {1},
year = {2007},
url = {https://doi.org/10.2390/biecoll-jib-2007-49},
doi = {10.2390/BIECOLL-JIB-2007-49},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/KrebsGKMSWWR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SaricJORB06,
author = {Jasmin Saric and
Lars Juhl Jensen and
Rossitza Ouzounova and
Isabel Rojas and
Peer Bork},
title = {Extraction of regulatory gene/protein networks from Medline},
journal = {Bioinform.},
volume = {22},
number = {6},
pages = {645--650},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/bti597},
doi = {10.1093/BIOINFORMATICS/BTI597},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SaricJORB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dils/WittigGKKMWASR06,
author = {Ulrike Wittig and
Martin Golebiewski and
Renate Kania and
Olga Krebs and
Saqib Mir and
Andreas Weidemann and
Stefanie Anstein and
Jasmin Saric and
Isabel Rojas},
editor = {Ulf Leser and
Felix Naumann and
Barbara A. Eckman},
title = {{SABIO-RK:} Integration and Curation of Reaction Kinetics Data},
booktitle = {Data Integration in the Life Sciences, Third International Workshop,
{DILS} 2006, Hinxton, UK, July 20-22, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4075},
pages = {94--103},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11799511\_9},
doi = {10.1007/11799511\_9},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dils/WittigGKKMWASR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcai/CiaramitaGRSR05,
author = {Massimiliano Ciaramita and
Aldo Gangemi and
Esther Ratsch and
Jasmin Saric and
Isabel Rojas},
editor = {Leslie Pack Kaelbling and
Alessandro Saffiotti},
title = {Unsupervised Learning of Semantic Relations between Concepts of a
Molecular Biology Ontology},
booktitle = {IJCAI-05, Proceedings of the Nineteenth International Joint Conference
on Artificial Intelligence, Edinburgh, Scotland, UK, July 30 - August
5, 2005},
pages = {659--664},
publisher = {Professional Book Center},
year = {2005},
url = {http://ijcai.org/Proceedings/05/Papers/1423.pdf},
timestamp = {Tue, 20 Aug 2019 16:16:29 +0200},
biburl = {https://dblp.org/rec/conf/ijcai/CiaramitaGRSR05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/SosaKRR04,
author = {Nestor Sosa and
Andreas Kremling and
Esther Ratsch and
Isabel Rojas},
title = {Web-based visualisation of the transcriptional control network of
Escherichia coli},
journal = {Silico Biol.},
volume = {4},
number = {4},
pages = {507--515},
year = {2004},
url = {http://content.iospress.com/articles/in-silico-biology/isb00152},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/SosaKRR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/SaricJR04,
author = {Jasmin Saric and
Lars Juhl Jensen and
Isabel Rojas},
title = {Large-scale extraction of gene regulation for model organisms in an
ontological context},
journal = {Silico Biol.},
volume = {5},
number = {1},
pages = {21--32},
year = {2004},
url = {http://content.iospress.com/articles/in-silico-biology/isb00164},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/SaricJR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/SaricJBOR04,
author = {Jasmin Saric and
Lars Juhl Jensen and
Peer Bork and
Rossitza Ouzounova and
Isabel Rojas},
editor = {Donia Scott and
Walter Daelemans and
Marilyn A. Walker},
title = {Extracting Regulatory Gene Expression Networks From Pubmed},
booktitle = {Proceedings of the 42nd Annual Meeting of the Association for Computational
Linguistics, 21-26 July, 2004, Barcelona, Spain},
pages = {191--198},
publisher = {{ACL}},
year = {2004},
url = {https://aclanthology.org/P04-1025/},
doi = {10.3115/1218955.1218980},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl/SaricJBOR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GulerER03,
author = {Sinan G{\"{u}}ler and
Andreas Eberhart and
Isabel Rojas},
title = {Web-based exchange of biochemical information},
journal = {Bioinform.},
volume = {19},
number = {13},
pages = {1730--1731},
year = {2003},
url = {https://doi.org/10.1093/bioinformatics/btg234},
doi = {10.1093/BIOINFORMATICS/BTG234},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GulerER03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/RojasRSW03,
author = {Isabel Rojas and
Esther Ratsch and
Jasmin Saric and
Ulrike Wittig},
title = {Notes on the use of ontologies in the biochemical domain},
journal = {Silico Biol.},
volume = {4},
number = {1},
pages = {89--96},
year = {2003},
url = {http://content.iospress.com/articles/in-silico-biology/isb00119},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/RojasRSW03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/RojasBRKWS02,
author = {Isabel Rojas and
Luca Bernardi and
Esther Ratsch and
Renate Kania and
Ulrike Wittig and
Jasmin Saric},
title = {A database system for the analysis of biochemical pathways},
journal = {Silico Biol.},
volume = {2},
number = {2},
pages = {75--86},
year = {2002},
url = {http://content.iospress.com/articles/in-silico-biology/isb00034},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/RojasBRKWS02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeckerR01,
author = {Moritz Y. Becker and
Isabel Rojas},
title = {A graph layout algorithm for drawing metabolic pathways},
journal = {Bioinform.},
volume = {17},
number = {5},
pages = {461--467},
year = {2001},
url = {https://doi.org/10.1093/bioinformatics/17.5.461},
doi = {10.1093/BIOINFORMATICS/17.5.461},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BeckerR01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vast/KretschmerCSGSRM01,
author = {Ursula Kretschmer and
Volker Coors and
Ulrike Spierling and
Dieter Grasbon and
Kerstin Schneider and
Isabel Rojas and
Rainer Malaka},
editor = {David Arnold and
Alan Chalmers and
Dieter W. Fellner},
title = {Meeting the spirit of history},
booktitle = {Proceedings of the 2001 Conference on Virtual Reality, Archeology,
and Cultural Heritage, Glyfada, Greece, November 28-30, 2001},
pages = {141--152},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/584993.585016},
doi = {10.1145/584993.585016},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/vast/KretschmerCSGSRM01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cj/Rojas95,
author = {Isabel Rojas},
title = {Compositional Construction of {SWN} models},
journal = {Comput. J.},
volume = {38},
number = {7},
pages = {612--621},
year = {1995},
url = {https://doi.org/10.1093/comjnl/38.7.612},
doi = {10.1093/COMJNL/38.7.612},
timestamp = {Sat, 20 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cj/Rojas95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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