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ORCIDBibTeX records: Joke Reumers
@article{DBLP:journals/bmcbi/MoerbekeKTRGS17,
author = {Marijke Van Moerbeke and
Adetayo Kasim and
Willem Talloen and
Joke Reumers and
Hinrich W. H. G{\"{o}}hlmann and
Ziv Shkedy},
title = {A random effects model for the identification of differential splicing
{(REIDS)} using exon and {HTA} arrays},
journal = {{BMC} Bioinform.},
volume = {18},
number = {1},
pages = {273:1--273:14},
year = {2017},
url = {https://doi.org/10.1186/s12859-017-1687-8},
doi = {10.1186/S12859-017-1687-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MoerbekeKTRGS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VerbistTRWBTACT15,
author = {Bie M. P. Verbist and
Kim Thys and
Joke Reumers and
Yves Wetzels and
Koen Van der Borght and
Willem Talloen and
Jeroen Aerssens and
Lieven Clement and
Olivier Thas},
title = {VirVarSeq: a low-frequency virus variant detection pipeline for Illumina
sequencing using adaptive base-calling accuracy filtering},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {94--101},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu587},
doi = {10.1093/BIOINFORMATICS/BTU587},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VerbistTRWBTACT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DecapRHCF15,
author = {Dries Decap and
Joke Reumers and
Charlotte Herzeel and
Pascal Costanza and
Jan Fostier},
title = {Halvade: scalable sequence analysis with MapReduce},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2482--2488},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv179},
doi = {10.1093/BIOINFORMATICS/BTV179},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DecapRHCF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VerbistCRTVTWMA15,
author = {Bie M. P. Verbist and
Lieven Clement and
Joke Reumers and
Kim Thys and
Alexander Vapirev and
Willem Talloen and
Yves Wetzels and
Joris Meys and
Jeroen Aerssens and
Luc Bijnens and
Olivier Thas},
title = {ViVaMBC: estimating viral sequence variation in complex populations
from illumina deep-sequencing data using model-based clustering},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {59:1--59:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0458-7},
doi = {10.1186/S12859-015-0458-7},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VerbistCRTVTWMA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BorghtTWCVRVA15,
author = {Koen Van der Borght and
Kim Thys and
Yves Wetzels and
Lieven Clement and
Bie M. P. Verbist and
Joke Reumers and
Herman van Vlijmen and
Jeroen Aerssens},
title = {{QQ-SNV:} single nucleotide variant detection at low frequency by
comparing the quality quantiles},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {379:1--379:14},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0812-9},
doi = {10.1186/S12859-015-0812-9},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BorghtTWCVRVA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ppam/DecapRHCF15,
author = {Dries Decap and
Joke Reumers and
Charlotte Herzeel and
Pascal Costanza and
Jan Fostier},
editor = {Roman Wyrzykowski and
Ewa Deelman and
Jack J. Dongarra and
Konrad Karczewski and
Jacek Kitowski and
Kazimierz Wiatr},
title = {Performance Analysis of a Parallel, Multi-node Pipeline for {DNA}
Sequencing},
booktitle = {Parallel Processing and Applied Mathematics - 11th International Conference,
{PPAM} 2015, Krakow, Poland, September 6-9, 2015. Revised Selected
Papers, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {9574},
pages = {233--242},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-32152-3\_22},
doi = {10.1007/978-3-319-32152-3\_22},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ppam/DecapRHCF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SakaiMRA13,
author = {Ryo Sakai and
Matthieu Moisse and
Joke Reumers and
Jan Aerts},
title = {Pipit: visualizing functional impacts of structural variations},
journal = {Bioinform.},
volume = {29},
number = {17},
pages = {2206--2207},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt367},
doi = {10.1093/BIOINFORMATICS/BTT367},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SakaiMRA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jclinbioinf/StubbsMHHPNKHRHSKMLS12,
author = {Andrew Stubbs and
Elizabeth A. McClellan and
Sebastiaan Horsman and
Saskia D. Hiltemann and
Ivo Palli and
Stephan Nouwens and
Anton H. J. Koning and
Frits Hoogland and
Joke Reumers and
Daphne Heijsman and
Sigrid Swagemakers and
Andreas Kremer and
Jules Meijerink and
Diether Lambrechts and
Peter J. van der Spek},
title = {Huvariome: a web server resource of whole genome next-generation sequencing
allelic frequencies to aid in pathological candidate gene selection},
journal = {J. Clin. Bioinform.},
volume = {2},
pages = {19},
year = {2012},
url = {https://doi.org/10.1186/2043-9113-2-19},
doi = {10.1186/2043-9113-2-19},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jclinbioinf/StubbsMHHPNKHRHSKMLS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BaetsDRMVDSR12,
author = {Greet De Baets and
Joost J. J. van Durme and
Joke Reumers and
Sebastian Maurer{-}Stroh and
Peter Vanhee and
Joaqu{\'{\i}}n Dopazo and
Joost Schymkowitz and
Frederic Rousseau},
title = {SNPeffect 4.0: on-line prediction of molecular and structural effects
of protein-coding variants},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {935--939},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr996},
doi = {10.1093/NAR/GKR996},
timestamp = {Mon, 04 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BaetsDRMVDSR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BaetsRBDSR11,
author = {Greet De Baets and
Joke Reumers and
Javier Delgado Blanco and
Joaqu{\'{\i}}n Dopazo and
Joost Schymkowitz and
Frederic Rousseau},
title = {An Evolutionary Trade-Off between Protein Turnover Rate and Protein
Aggregation Favors a Higher Aggregation Propensity in Fast Degrading
Proteins},
journal = {PLoS Comput. Biol.},
volume = {7},
number = {6},
year = {2011},
url = {https://doi.org/10.1371/journal.pcbi.1002090},
doi = {10.1371/JOURNAL.PCBI.1002090},
timestamp = {Mon, 04 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/BaetsRBDSR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/VanheeRSBSSR10,
author = {Peter Vanhee and
Joke Reumers and
Francois Stricher and
Lies Baeten and
Luis Serrano and
Joost Schymkowitz and
Frederic Rousseau},
title = {PepX: a structural database of non-redundant protein-peptide complexes},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {545--551},
year = {2010},
url = {https://doi.org/10.1093/nar/gkp893},
doi = {10.1093/NAR/GKP893},
timestamp = {Mon, 04 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/VanheeRSBSSR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ReumersSR09,
author = {Joke Reumers and
Joost Schymkowitz and
Frederic Rousseau},
title = {Using structural bioinformatics to investigate the impact of non synonymous
SNPs and disease mutations: scope and limitations},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-8}},
pages = {9},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S8-S9},
doi = {10.1186/1471-2105-10-S8-S9},
timestamp = {Mon, 04 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ReumersSR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ReumersCMMDDRS08,
author = {Joke Reumers and
Luc{\'{\i}}a Conde and
Ignacio Medina and
Sebastian Maurer{-}Stroh and
Joost J. J. van Durme and
Joaqu{\'{\i}}n Dopazo and
Frederic Rousseau and
Joost Schymkowitz},
title = {Joint annotation of coding and non-coding single nucleotide polymorphisms
and mutations in the SNPeffect and PupaSuite databases},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {825--829},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm979},
doi = {10.1093/NAR/GKM979},
timestamp = {Mon, 04 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ReumersCMMDDRS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BaetenRTSLSRS08,
author = {Lies Baeten and
Joke Reumers and
Vicente Tur and
Fran{\c{c}}ois Stricher and
Tom Lenaerts and
Luis Serrano and
Frederic Rousseau and
Joost Schymkowitz},
title = {Reconstruction of Protein Backbones from the BriX Collection of Canonical
Protein Fragments},
journal = {PLoS Comput. Biol.},
volume = {4},
number = {5},
year = {2008},
url = {https://doi.org/10.1371/journal.pcbi.1000083},
doi = {10.1371/JOURNAL.PCBI.1000083},
timestamp = {Mon, 04 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/BaetenRTSLSRS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/ReumersSR08,
author = {Joke Reumers and
Joost Schymkowitz and
Frederic Rousseau},
editor = {Christopher J. O. Baker and
Dietrich Rebholz{-}Schuhmann},
title = {Using structural bioinformatics to investigate the impact of non synonymous
SNPs and disease mutations: scope and limitations},
booktitle = {Proceedings of the {ECCB} 2008 Workshop: Annotation, Interpretation
and Management of Mutations {(} {AIMM} {)} Cagliari, Sardinia, Italy,
September, June 22, 2008},
series = {{CEUR} Workshop Proceedings},
volume = {429},
publisher = {CEUR-WS.org},
year = {2008},
url = {https://ceur-ws.org/Vol-429/paper2.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:35 +0100},
biburl = {https://dblp.org/rec/conf/eccb/ReumersSR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ReumersMSR06,
author = {Joke Reumers and
Sebastian Maurer{-}Stroh and
Joost Schymkowitz and
Frederic Rousseau},
title = {SNPeffect v2.0: a new step in investigating the molecular phenotypic
effects of human non-synonymous SNPs},
journal = {Bioinform.},
volume = {22},
number = {17},
pages = {2183--2185},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl348},
doi = {10.1093/BIOINFORMATICS/BTL348},
timestamp = {Mon, 04 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ReumersMSR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CondeVDARRSD06,
author = {Luc{\'{\i}}a Conde and
Juan M. Vaquerizas and
Hern{\'{a}}n Dopazo and
Leonardo Arbiza and
Joke Reumers and
Frederic Rousseau and
Joost Schymkowitz and
Joaqu{\'{\i}}n Dopazo},
title = {PupaSuite: finding functional single nucleotide polymorphisms for
large-scale genotyping purposes},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Web-Server-Issue},
pages = {621--625},
year = {2006},
url = {https://doi.org/10.1093/nar/gkl071},
doi = {10.1093/NAR/GKL071},
timestamp = {Mon, 04 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CondeVDARRSD06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ReumersSFSSR05,
author = {Joke Reumers and
Joost Schymkowitz and
Jesper Ferkinghoff{-}Borg and
Francois Stricher and
Luis Serrano and
Frederic Rousseau},
title = {SNPeffect: a database mapping molecular phenotypic effects of human
non-synonymous coding SNPs},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {527--532},
year = {2005},
url = {https://doi.org/10.1093/nar/gki086},
doi = {10.1093/NAR/GKI086},
timestamp = {Mon, 04 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ReumersSFSSR05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iat/MaesRM03,
author = {Sam Maes and
Joke Reumers and
Bernard Manderick},
title = {Identifiability of Causal Effects in a Multi-Agent Causal Model},
booktitle = {2003 {IEEE/WIC} International Conference on Intelligent Agent Technology
{(IAT} 2003), 13-17 October 2003, Halifax, Canada},
pages = {605--608},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/IAT.2003.1241155},
doi = {10.1109/IAT.2003.1241155},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iat/MaesRM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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