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BibTeX records: Irene Papatheodorou
@article{DBLP:journals/bioinformatics/UpchurchPABBNGKAHRGWABBB23, author = {Sean Upchurch and Emilio Palumbo and Jeremy Adams and David Bujold and Guillaume Bourque and Jared Nedzel and Keenan Graham and Meenakshi S. Kagda and Pedro Assis and Benjamin C. Hitz and Emilio Righi and Roderic Guig{\'{o}} and Barbara J. Wold and Alvis Brazma and Julia Burchard and Joe Capka and Michael Cherry and Laura Clarke and Brian Craft and Manolis Dermitzakis and Mark Diekhans and John Dursi and Michael Sean Fitzsimons and Zac Flaming and Romina Garrido and Alfred Gil and Paul Godden and Matt Green and Mitch Guttman and Brian Haas and Max Haeussler and Bo Li and Sten Linnarsson and Adam Lipski and David Liu and Simonne Longerich and David Lougheed and Jonathan Manning and John C. Marioni and Christopher Meyer and Stephen B. Montgomery and Alyssa Morrow and Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and Jared L. Nedzel and David Nguyen and Kevin Osborn and Francis Ouellette and Irene Papatheodorou and Dmitri D. Pervouchine and Arun K. Ramani and Jordi Rambla and Bashir Sadjad and David Steinberg and Jeremiah Talkar and Timothy Tickle and Kathy Tzeng and Saman Vaisipour and Sean Watford and Barbara Wold and Zhenyu Zhang and Jing Zhu}, title = {RNAget: an {API} to securely retrieve {RNA} quantifications}, journal = {Bioinform.}, volume = {39}, number = {4}, year = {2023}, url = {https://doi.org/10.1093/bioinformatics/btad126}, doi = {10.1093/BIOINFORMATICS/BTAD126}, timestamp = {Sat, 08 Jun 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/UpchurchPABBNGKAHRGWABBB23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/midm/BurgerBADPGHHSWA23, author = {Albert Burger and Richard A. Baldock and David J. Adams and Shahida Din and Irene Papatheodorou and Michael Glinka and Bill Hill and Derek Houghton and Mehran Sharghi and Michael N. Wicks and Mark J. Arends}, title = {Towards a clinically-based common coordinate framework for the human gut cell atlas: the gut models}, journal = {{BMC} Medical Informatics Decis. Mak.}, volume = {23}, number = {1}, pages = {36}, year = {2023}, url = {https://doi.org/10.1186/s12911-023-02111-9}, doi = {10.1186/S12911-023-02111-9}, timestamp = {Sat, 11 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/midm/BurgerBADPGHHSWA23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/ThakurBBFHHKKLLMMOPVVWZM23, author = {Matthew Thakur and Alex Bateman and Cath Brooksbank and Mallory Ann Freeberg and Melissa Harrison and Matthew Hartley and Thomas M. Keane and Gerard J. Kleywegt and Andrew Leach and Maria Levchenko and Sarah L. Morgan and Ellen M. McDonagh and Sandra E. Orchard and Irene Papatheodorou and Sameer Velankar and Juan Antonio Vizca{\'{\i}}no and Rick Witham and Barbara Zdrazil and Johanna R. McEntyre}, title = {EMBL's European Bioinformatics Institute {(EMBL-EBI)} in 2022}, journal = {Nucleic Acids Res.}, volume = {51}, number = {{D1}}, pages = {9--17}, year = {2023}, url = {https://doi.org/10.1093/nar/gkac1098}, doi = {10.1093/NAR/GKAC1098}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/ThakurBBFHHKKLLMMOPVVWZM23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/MorenoFGMMMFFBB22, author = {Pablo A. Moreno and Silvie Fexova and Nancy George and Jonathan R. Manning and Zhichao Miao and Suhaib Mohammed and Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and Anja F{\"{u}}llgrabe and Yalan Bi and Natassja Bush and Haider Iqbal and Upendra Kumbham and Andrey Solovyev and Lingyun Zhao and Ananth Prakash and David Garc{\'{\i}}a{-}Seisdedos and Deepti Jaiswal Kundu and Shengbo Wang and Mathias Walzer and Laura Clarke and David Osumi{-}Sutherland and Marcela Karey Tello{-}Ruiz and Sunita Kumari and Doreen Ware and Jana Eliasova and Mark J. Arends and Martijn C. Nawijn and Kerstin B. Meyer and Tony Burdett and John C. Marioni and Sarah A. Teichmann and Juan Antonio Vizca{\'{\i}}no and Alvis Brazma and Irene Papatheodorou}, title = {Expression Atlas update: gene and protein expression in multiple species}, journal = {Nucleic Acids Res.}, volume = {50}, number = {{D1}}, pages = {129--140}, year = {2022}, url = {https://doi.org/10.1093/nar/gkab1030}, doi = {10.1093/NAR/GKAB1030}, timestamp = {Sun, 04 Aug 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/MorenoFGMMMFFBB22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/WangGPKCGFMPJV22, author = {Shengbo Wang and David Garc{\'{\i}}a{-}Seisdedos and Ananth Prakash and Deepti Jaiswal Kundu and Andrew Collins and Nancy George and Silvie Fexova and Pablo A. Moreno and Irene Papatheodorou and Andrew R. Jones and Juan Antonio Vizca{\'{\i}}no}, title = {Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues}, journal = {PLoS Comput. Biol.}, volume = {18}, number = {6}, year = {2022}, url = {https://doi.org/10.1371/journal.pcbi.1010174}, doi = {10.1371/JOURNAL.PCBI.1010174}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ploscb/WangGPKCGFMPJV22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SpeirBMMNPPRSKH21, author = {Matthew L. Speir and Aparna Bhaduri and Nikolay S. Markov and Pablo A. Moreno and Tomasz J. Nowakowski and Irene Papatheodorou and Alex A. Pollen and Brian J. Raney and Lucas Seninge and W. James Kent and Maximilian Haeussler}, title = {{UCSC} Cell Browser: visualize your single-cell data}, journal = {Bioinform.}, volume = {37}, number = {23}, pages = {4578--4580}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btab503}, doi = {10.1093/BIOINFORMATICS/BTAB503}, timestamp = {Tue, 12 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/SpeirBMMNPPRSKH21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/Tello-RuizNGOWP21, author = {Marcela K. Tello{-}Ruiz and Sushma Naithani and Parul Gupta and Andrew Olson and Sharon Wei and Justin Preece and Yinping Jiao and Bo Wang and Kapeel Chougule and Priyanka Garg and Justin Elser and Sunita Kumari and Vivek Kumar and Bruno Contreras{-}Moreira and Guy Naamati and Nancy George and Justin Cook and Dan M. Bolser and Peter D'Eustachio and Lincoln D. Stein and Amit Gupta and Weijia Xu and Jennifer Regala and Irene Papatheodorou and Paul J. Kersey and Paul Flicek and Crispin Taylor and Pankaj Jaiswal and Doreen Ware}, title = {Gramene 2021: harnessing the power of comparative genomics and pathways for plant research}, journal = {Nucleic Acids Res.}, volume = {49}, number = {Database-Issue}, pages = {D1452--D1463}, year = {2021}, url = {https://doi.org/10.1093/nar/gkaa979}, doi = {10.1093/NAR/GKAA979}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/Tello-RuizNGOWP21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/SarkansF0ABDFGI21, author = {Ugis Sarkans and Anja F{\"{u}}llgrabe and Ahmed Ali and Awais Athar and Ehsan Behrangi and Nestor Diaz and Silvie Fexova and Nancy George and Haider Iqbal and Sandeep Kurri and Jhoan Munoz and Juan Camillo Rada and Irene Papatheodorou and Alvis Brazma}, title = {From ArrayExpress to BioStudies}, journal = {Nucleic Acids Res.}, volume = {49}, number = {Database-Issue}, pages = {D1502--D1506}, year = {2021}, url = {https://doi.org/10.1093/nar/gkaa1062}, doi = {10.1093/NAR/GKAA1062}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/SarkansF0ABDFGI21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/NaithaniGPDEGDK20, author = {Sushma Naithani and Parul Gupta and Justin Preece and Peter D'Eustachio and Justin Elser and Priyanka Garg and Daemon A. Dikeman and Jason Kiff and Justin Cook and Andrew Olson and Sharon Wei and Marcela K. Tello{-}Ruiz and Antonio Fabregat Mundo and Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and Suhaib Mohammed and Tiejun Cheng and Evan Bolton and Irene Papatheodorou and Lincoln Stein and Doreen Ware and Pankaj Jaiswal}, title = {Plant Reactome: a knowledgebase and resource for comparative pathway analysis}, journal = {Nucleic Acids Res.}, volume = {48}, number = {Database-Issue}, pages = {D1093--D1103}, year = {2020}, url = {https://doi.org/10.1093/nar/gkz996}, doi = {10.1093/NAR/GKZ996}, timestamp = {Sun, 12 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nar/NaithaniGPDEGDK20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/HoweCSMAAABBCCC20, author = {Kevin L. Howe and Bruno Contreras{-}Moreira and Nishadi De Silva and Gareth Maslen and Wasiu A. Akanni and James E. Allen and Jorge {\'{A}}lvarez{-}Jarreta and Matthieu Barba and Dan M. Bolser and Lahcen Cambell and Manuel Carbajo and Marc Chakiachvili and Mikkel B. Christensen and Carla A. Cummins and Alayne Cuzick and Paul Davis and Silvie Fexova and Astrid Gall and Nancy George and Laurent Gil and Parul Gupta and Kim E. Hammond{-}Kosack and Erin Haskell and Sarah E. Hunt and Pankaj Jaiswal and Sophie H. Janacek and Paul J. Kersey and Nick Langridge and Uma Maheswari and Thomas Maurel and Mark D. McDowall and Benjamin Moore and Matthieu Muffato and Guy Naamati and Sushma Naithani and Andrew Olson and Irene Papatheodorou and Mateus Patricio and Michael Paulini and Helder Pedro and Emily Perry and Justin Preece and Marc Rosello and Matthew Russell and Vasily Sitnik and Daniel M. Staines and Joshua C. Stein and Marcela K. Tello{-}Ruiz and Stephen J. Trevanion and Martin Urban and Sharon Wei and Doreen Ware and Gary Williams and Andrew D. Yates and Paul Flicek}, title = {Ensembl Genomes 2020 - enabling non-vertebrate genomic research}, journal = {Nucleic Acids Res.}, volume = {48}, number = {Database-Issue}, pages = {D689--D695}, year = {2020}, url = {https://doi.org/10.1093/nar/gkz890}, doi = {10.1093/NAR/GKZ890}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/HoweCSMAAABBCCC20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/PapatheodorouMM20, author = {Irene Papatheodorou and Pablo A. Moreno and Jonathan R. Manning and Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and Nancy George and Silvie Fexova and Nuno A. Fonseca and Anja F{\"{u}}llgrabe and Matthew Green and Ni Huang and Laura Huerta and Haider Iqbal and Monica Jianu and Suhaib Mohammed and Lingyun Zhao and Andrew F. Jarnuczak and Simon Jupp and John C. Marioni and Kerstin B. Meyer and Robert Petryszak and Cesar Augusto Prada Medina and Carlos Talavera{-}L{\'{o}}pez and Sarah A. Teichmann and Juan Antonio Vizca{\'{\i}}no and Alvis Brazma}, title = {Expression Atlas update: from tissues to single cells}, journal = {Nucleic Acids Res.}, volume = {48}, number = {Database-Issue}, pages = {D77--D83}, year = {2020}, url = {https://doi.org/10.1093/nar/gkz947}, doi = {10.1093/NAR/GKZ947}, timestamp = {Wed, 24 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/PapatheodorouMM20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/AtharFGIHASFPPS19, author = {Awais Athar and Anja F{\"{u}}llgrabe and Nancy George and Haider Iqbal and Laura Huerta and Ahmed Ali and Catherine Snow and Nuno A. Fonseca and Robert Petryszak and Irene Papatheodorou and Ugis Sarkans and Alvis Brazma}, title = {ArrayExpress update - from bulk to single-cell expression data}, journal = {Nucleic Acids Res.}, volume = {47}, number = {Database-Issue}, pages = {D711--D715}, year = {2019}, url = {https://doi.org/10.1093/nar/gky964}, doi = {10.1093/NAR/GKY964}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/AtharFGIHASFPPS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/Tello-RuizNSGCO18, author = {Marcela K. Tello{-}Ruiz and Sushma Naithani and Joshua C. Stein and Parul Gupta and Michael Campbell and Andrew Olson and Sharon Wei and Justin Preece and Matthew J. Geniza and Yinping Jiao and Young Koung Lee and Bo Wang and Joseph Mulvaney and Kapeel Chougule and Justin Elser and Noor Al{-}Bader and Sunita Kumari and James Thomason and Vivek Kumar and Daniel M. Bolser and Guy Naamati and Electra Tapanari and Nuno A. Fonseca and Laura Huerta and Haider Iqbal and Maria Keays and Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and Y. Amy Tang and Antonio Fabregat and Peter D'Eustachio and Joel Weiser and Lincoln D. Stein and Robert Petryszak and Irene Papatheodorou and Paul J. Kersey and Patti Lockhart and Crispin Taylor and Pankaj Jaiswal and Doreen Ware}, title = {Gramene 2018: unifying comparative genomics and pathway resources for plant research}, journal = {Nucleic Acids Res.}, volume = {46}, number = {Database-Issue}, pages = {D1181--D1189}, year = {2018}, url = {https://doi.org/10.1093/nar/gkx1111}, doi = {10.1093/NAR/GKX1111}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/Tello-RuizNSGCO18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/PapatheodorouFK18, author = {Irene Papatheodorou and Nuno A. Fonseca and Maria Keays and Y. Amy Tang and Elisabet Barrera and Wojciech Bazant and Melissa L. Burke and Anja F{\"{u}}llgrabe and Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and Nancy George and Laura Huerta and Satu Koskinen and Suhaib Mohammed and Matthew J. Geniza and Justin Preece and Pankaj Jaiswal and Andrew F. Jarnuczak and Wolfgang Huber and Oliver Stegle and Juan Antonio Vizca{\'{\i}}no and Alvis Brazma and Robert Petryszak}, title = {Expression Atlas: gene and protein expression across multiple studies and organisms}, journal = {Nucleic Acids Res.}, volume = {46}, number = {Database-Issue}, pages = {D246--D251}, year = {2018}, url = {https://doi.org/10.1093/nar/gkx1158}, doi = {10.1093/NAR/GKX1158}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/PapatheodorouFK18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/KoscielnyACCFGH17, author = {Gautier Koscielny and Peter An and Denise Carvalho{-}Silva and Jennifer A. Cham and Luca Fumis and Rippa Gasparyan and Samiul Hasan and Nikiforos Karamanis and Michael Maguire and Eliseo Papa and Andrea Pierleoni and Miguel Pignatelli and Theo Platt and Francis Rowland and Priyanka Wankar and A. Patr{\'{\i}}cia Bento and Tony Burdett and Antonio Fabregat and Simon A. Forbes and Anna Gaulton and Cristina Yenyxe Gonz{\'{a}}lez and Henning Hermjakob and Anne Hersey and Steven Jupe and Senay Kafkas and Maria Keays and Catherine Leroy and Francisco{-}Javier Lopez and Mar{\'{\i}}a P. Magari{\~{n}}os and James Malone and Johanna R. McEntyre and Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and Claire O'Donovan and Irene Papatheodorou and Helen E. Parkinson and Barbara Palka and Justin E. Paschall and Robert Petryszak and Naruemon Pratanwanich and Sirarat Sarntivijai and Gary Saunders and Konstantinos Sidiropoulos and Thomas Smith and Zbyslaw Sondka and Oliver Stegle and Y. Amy Tang and Edward Turner and Brendan W. Vaughan and Olga Vrousgou and Xavier Watkins and Maria Jesus Martin and Philippe Sanseau and Jessica Vamathevan and Ewan Birney and Jeffrey Barrett and Ian Dunham}, title = {Open Targets: a platform for therapeutic target identification and validation}, journal = {Nucleic Acids Res.}, volume = {45}, number = {Database-Issue}, pages = {D985--D994}, year = {2017}, url = {https://doi.org/10.1093/nar/gkw1055}, doi = {10.1093/NAR/GKW1055}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/KoscielnyACCFGH17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biomedsem/PapatheodorouOS15, author = {Irene Papatheodorou and Anika Oellrich and Damian Smedley}, title = {Linking gene expression to phenotypes via pathway information}, journal = {J. Biomed. Semant.}, volume = {6}, pages = {17}, year = {2015}, url = {https://doi.org/10.1186/s13326-015-0013-5}, doi = {10.1186/S13326-015-0013-5}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biomedsem/PapatheodorouOS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/OellrichJPS14, author = {Anika Oellrich and Julius O. B. Jacobsen and Irene Papatheodorou and Damian Smedley}, title = {Using association rule mining to determine promising secondary phenotyping hypotheses}, journal = {Bioinform.}, volume = {30}, number = {12}, pages = {52--59}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btu260}, doi = {10.1093/BIOINFORMATICS/BTU260}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/OellrichJPS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/PapatheodorouPT14, author = {Irene Papatheodorou and Rudolfs Petrovs and Janet M. Thornton}, title = {Comparison of the mammalian insulin signalling pathway to invertebrates in the context of FOXO-mediated ageing}, journal = {Bioinform.}, volume = {30}, number = {21}, pages = {2999--3003}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btu493}, doi = {10.1093/BIOINFORMATICS/BTU493}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/PapatheodorouPT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/lpnmr/PapatheodorouKS05, author = {Irene Papatheodorou and Antonis C. Kakas and Marek J. Sergot}, editor = {Chitta Baral and Gianluigi Greco and Nicola Leone and Giorgio Terracina}, title = {Inference of Gene Relations from Microarray Data by Abduction}, booktitle = {Logic Programming and Nonmonotonic Reasoning, 8th International Conference, {LPNMR} 2005, Diamante, Italy, September 5-8, 2005, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {3662}, pages = {389--393}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11546207\_33}, doi = {10.1007/11546207\_33}, timestamp = {Sun, 02 Jun 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/lpnmr/PapatheodorouKS05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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