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ORCIDBibTeX records: Tomoko Ohta
@article{DBLP:journals/bioinformatics/KaewphanLOPGP16,
author = {Suwisa Kaewphan and
Sofie Van Landeghem and
Tomoko Ohta and
Yves Van de Peer and
Filip Ginter and
Sampo Pyysalo},
title = {Cell line name recognition in support of the identification of synthetic
lethality in cancer from text},
journal = {Bioinform.},
volume = {32},
number = {2},
pages = {276--282},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv570},
doi = {10.1093/BIOINFORMATICS/BTV570},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KaewphanLOPGP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/TateisiOPMA16,
author = {Yuka Tateisi and
Tomoko Ohta and
Sampo Pyysalo and
Yusuke Miyao and
Akiko Aizawa},
editor = {Nicoletta Calzolari and
Khalid Choukri and
Thierry Declerck and
Sara Goggi and
Marko Grobelnik and
Bente Maegaard and
Joseph Mariani and
H{\'{e}}l{\`{e}}ne Mazo and
Asunci{\'{o}}n Moreno and
Jan Odijk and
Stelios Piperidis},
title = {Typed Entity and Relation Annotation on Computer Science Papers},
booktitle = {Proceedings of the Tenth International Conference on Language Resources
and Evaluation {LREC} 2016, Portoro{\v{z}}, Slovenia, May 23-28, 2016},
publisher = {European Language Resources Association {(ELRA)}},
year = {2016},
url = {http://www.lrec-conf.org/proceedings/lrec2016/summaries/784.html},
timestamp = {Mon, 19 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/lrec/TateisiOPMA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PyysaloORRCJCTA15,
author = {Sampo Pyysalo and
Tomoko Ohta and
Rafal Rak and
Andrew Rowley and
Hong{-}Woo Chun and
Sung{-}Jae Jung and
Sung{-}Pil Choi and
Jun'ichi Tsujii and
Sophia Ananiadou},
title = {Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP
Shared Task 2013},
journal = {{BMC} Bioinform.},
volume = {16},
number = {{S10}},
pages = {S2},
year = {2015},
url = {https://doi.org/10.1186/1471-2105-16-s10-s2},
doi = {10.1186/1471-2105-16-S10-S2},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PyysaloORRCJCTA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MiwaORRKPA13,
author = {Makoto Miwa and
Tomoko Ohta and
Rafal Rak and
Andrew Rowley and
Douglas B. Kell and
Sampo Pyysalo and
Sophia Ananiadou},
title = {A method for integrating and ranking the evidence for biochemical
pathways by mining reactions from text},
journal = {Bioinform.},
volume = {29},
number = {13},
pages = {44--52},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt227},
doi = {10.1093/BIOINFORMATICS/BTT227},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MiwaORRKPA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MihailaOPA13,
author = {Claudiu Mihaila and
Tomoko Ohta and
Sampo Pyysalo and
Sophia Ananiadou},
title = {BioCause: Annotating and analysing causality in the biomedical domain},
journal = {{BMC} Bioinform.},
volume = {14},
pages = {2},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-2},
doi = {10.1186/1471-2105-14-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MihailaOPA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MiwaPOA13,
author = {Makoto Miwa and
Sampo Pyysalo and
Tomoko Ohta and
Sophia Ananiadou},
title = {Wide coverage biomedical event extraction using multiple partially
overlapping corpora},
journal = {{BMC} Bioinform.},
volume = {14},
pages = {175},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-175},
doi = {10.1186/1471-2105-14-175},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MiwaPOA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/NedellecBKKOPZ13,
author = {Claire N{\'{e}}dellec and
Robert Bossy and
Jin{-}Dong Kim and
Jung{-}Jae Kim and
Tomoko Ohta and
Sampo Pyysalo and
Pierre Zweigenbaum},
editor = {Claire N{\'{e}}dellec and
Robert Bossy and
Jin{-}Dong Kim and
Jung{-}Jae Kim and
Tomoko Ohta and
Sampo Pyysalo and
Pierre Zweigenbaum},
title = {Overview of BioNLP Shared Task 2013},
booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria,
August 9, 2013},
pages = {1--7},
publisher = {Association for Computational Linguistics},
year = {2013},
url = {https://aclanthology.org/W13-2001/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/NedellecBKKOPZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/PyysaloOA13,
author = {Sampo Pyysalo and
Tomoko Ohta and
Sophia Ananiadou},
editor = {Claire N{\'{e}}dellec and
Robert Bossy and
Jin{-}Dong Kim and
Jung{-}Jae Kim and
Tomoko Ohta and
Sampo Pyysalo and
Pierre Zweigenbaum},
title = {Overview of the Cancer Genetics {(CG)} task of BioNLP Shared Task
2013},
booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria,
August 9, 2013},
pages = {58--66},
publisher = {Association for Computational Linguistics},
year = {2013},
url = {https://aclanthology.org/W13-2008/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/PyysaloOA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/OhtaPRRCJCAT13,
author = {Tomoko Ohta and
Sampo Pyysalo and
Rafal Rak and
Andrew Rowley and
Hong{-}Woo Chun and
Sung{-}Jae Jung and
Sung{-}Pil Choi and
Sophia Ananiadou and
Jun'ichi Tsujii},
editor = {Claire N{\'{e}}dellec and
Robert Bossy and
Jin{-}Dong Kim and
Jung{-}Jae Kim and
Tomoko Ohta and
Sampo Pyysalo and
Pierre Zweigenbaum},
title = {Overview of the Pathway Curation {(PC)} task of BioNLP Shared Task
2013},
booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria,
August 9, 2013},
pages = {67--75},
publisher = {Association for Computational Linguistics},
year = {2013},
url = {https://aclanthology.org/W13-2009/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/OhtaPRRCJCAT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bionlp/2013-s,
editor = {Claire N{\'{e}}dellec and
Robert Bossy and
Jin{-}Dong Kim and
Jung{-}Jae Kim and
Tomoko Ohta and
Sampo Pyysalo and
Pierre Zweigenbaum},
title = {Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria,
August 9, 2013},
publisher = {Association for Computational Linguistics},
year = {2013},
url = {https://aclanthology.org/W13-2000/},
isbn = {978-1-937284-55-8},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/2013-s.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PyysaloOMCTA12,
author = {Sampo Pyysalo and
Tomoko Ohta and
Makoto Miwa and
Han{-}Cheol Cho and
Junichi Tsujii and
Sophia Ananiadou},
title = {Event extraction across multiple levels of biological organization},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {575--581},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts407},
doi = {10.1093/BIOINFORMATICS/BTS407},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PyysaloOMCTA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PyysaloORSMWSTA12,
author = {Sampo Pyysalo and
Tomoko Ohta and
Rafal Rak and
Daniel E. Sullivan and
Chunhong Mao and
Chunxia Wang and
Bruno W. S. Sobral and
Jun'ichi Tsujii and
Sophia Ananiadou},
title = {Overview of the ID, {EPI} and {REL} tasks of BioNLP Shared Task 2011},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-11}},
pages = {S2},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S11-S2},
doi = {10.1186/1471-2105-13-S11-S2},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PyysaloORSMWSTA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/StenetorpPOAT12,
author = {Pontus Stenetorp and
Sampo Pyysalo and
Tomoko Ohta and
Sophia Ananiadou and
Jun'ichi Tsujii},
editor = {Roser Morante and
Caroline Sporleder},
title = {Bridging the Gap Between Scope-based and Event-based Negation/Speculation
Annotations: {A} Bridge Not Too Far},
booktitle = {Proceedings of the Workshop on Extra-Propositional Aspects of Meaning
in Computational Linguistics, ExProM@ACL 2012, Jeju, Republic of Korea,
July 13, 2012},
pages = {47--56},
publisher = {Association for Computational Linguistics},
year = {2012},
url = {https://aclanthology.org/W12-3806/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl/StenetorpPOAT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/BjorneLPOGPAS12,
author = {Jari Bj{\"{o}}rne and
Sofie Van Landeghem and
Sampo Pyysalo and
Tomoko Ohta and
Filip Ginter and
Yves Van de Peer and
Sophia Ananiadou and
Tapio Salakoski},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
Bonnie L. Webber and
Jun'ichi Tsujii and
John Pestian},
title = {PubMed-Scale Event Extraction for Post-Translational Modifications,
Epigenetics and Protein Structural Relations},
booktitle = {Proceedings of the 2012 Workshop on Biomedical Natural Language Processing,
BioNLP@HLT-NAACL Montr{\`{e}}al, Canada, June 8, 2012},
pages = {82--90},
publisher = {Association for Computational Linguistics},
year = {2012},
url = {https://aclanthology.org/W12-2410/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/BjorneLPOGPAS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/PyysaloSOKA12,
author = {Sampo Pyysalo and
Pontus Stenetorp and
Tomoko Ohta and
Jin{-}Dong Kim and
Sophia Ananiadou},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
Bonnie L. Webber and
Jun'ichi Tsujii and
John Pestian},
title = {New Resources and Perspectives for Biomedical Event Extraction},
booktitle = {Proceedings of the 2012 Workshop on Biomedical Natural Language Processing,
BioNLP@HLT-NAACL Montr{\`{e}}al, Canada, June 8, 2012},
pages = {100--108},
publisher = {Association for Computational Linguistics},
year = {2012},
url = {https://aclanthology.org/W12-2412/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/PyysaloSOKA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eacl/StenetorpPTOAT12,
author = {Pontus Stenetorp and
Sampo Pyysalo and
Goran Topic and
Tomoko Ohta and
Sophia Ananiadou and
Jun'ichi Tsujii},
editor = {Walter Daelemans and
Mirella Lapata and
Llu{\'{\i}}s M{\`{a}}rquez},
title = {brat: a Web-based Tool for NLP-Assisted Text Annotation},
booktitle = {{EACL} 2012, 13th Conference of the European Chapter of the Association
for Computational Linguistics, Avignon, France, April 23-27, 2012},
pages = {102--107},
publisher = {The Association for Computer Linguistics},
year = {2012},
url = {https://aclanthology.org/E12-2021/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/eacl/StenetorpPTOAT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/HoehndorfNPOOR11,
author = {Robert Hoehndorf and
Axel{-}Cyrille Ngonga Ngomo and
Sampo Pyysalo and
Tomoko Ohta and
Anika Oellrich and
Dietrich Rebholz{-}Schuhmann},
title = {Ontology design patterns to disambiguate relations between genes and
gene products in {GENIA}},
journal = {J. Biomed. Semant.},
volume = {2},
number = {{S-5}},
pages = {S1},
year = {2011},
url = {http://www.jbiomedsem.com/content/2/S5/S1},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/HoehndorfNPOOR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/OhtaPMT11,
author = {Tomoko Ohta and
Sampo Pyysalo and
Makoto Miwa and
Jun'ichi Tsujii},
title = {Event extraction for {DNA} methylation},
journal = {J. Biomed. Semant.},
volume = {2},
number = {{S-5}},
pages = {S2},
year = {2011},
url = {http://www.jbiomedsem.com/content/2/S5/S2},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/OhtaPMT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/PyysaloOT11,
author = {Sampo Pyysalo and
Tomoko Ohta and
Jun'ichi Tsujii},
title = {An analysis of gene/protein associations at PubMed scale},
journal = {J. Biomed. Semant.},
volume = {2},
number = {{S-5}},
pages = {S5},
year = {2011},
url = {http://www.jbiomedsem.com/content/2/S5/S5},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/PyysaloOT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/VinczeSMOF11,
author = {Veronika Vincze and
Gy{\"{o}}rgy Szarvas and
Gy{\"{o}}rgy M{\'{o}}ra and
Tomoko Ohta and
Rich{\'{a}}rd Farkas},
title = {Linguistic scope-based and biological event-based speculation and
negation annotations in the BioScope and Genia Event corpora},
journal = {J. Biomed. Semant.},
volume = {2},
number = {{S-5}},
pages = {S8},
year = {2011},
url = {http://www.jbiomedsem.com/content/2/S5/S8},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/VinczeSMOF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KanoBGSBHCVRHKBLPPMANPORRSCKPOT11,
author = {Yoshinobu Kano and
Jari Bj{\"{o}}rne and
Filip Ginter and
Tapio Salakoski and
Ekaterina Buyko and
Udo Hahn and
K. Bretonnel Cohen and
Karin Verspoor and
Christophe Roeder and
Lawrence E. Hunter and
Halil Kilicoglu and
Sabine Bergler and
Sofie Van Landeghem and
Thomas Van Parys and
Yves Van de Peer and
Makoto Miwa and
Sophia Ananiadou and
Mariana L. Neves and
Alberto D. Pascual{-}Montano and
Arzucan {\"{O}}zg{\"{u}}r and
Dragomir R. Radev and
Sebastian Riedel and
Rune S{\ae}tre and
Hong{-}Woo Chun and
Jin{-}Dong Kim and
Sampo Pyysalo and
Tomoko Ohta and
Jun'ichi Tsujii},
title = {U-Compare bio-event meta-service: compatible BioNLP event extraction
services},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {481},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-481},
doi = {10.1186/1471-2105-12-481},
timestamp = {Thu, 17 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KanoBGSBHCVRHKBLPPMANPORRSCKPOT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ci/KimOPKT11,
author = {Jin{-}Dong Kim and
Tomoko Ohta and
Sampo Pyysalo and
Yoshinobu Kano and
Jun'ichi Tsujii},
title = {Extracting Bio-molecular Events from literature - the BioNLP'09 Shared
Task},
journal = {Comput. Intell.},
volume = {27},
number = {4},
pages = {513--540},
year = {2011},
url = {https://doi.org/10.1111/j.1467-8640.2011.00398.x},
doi = {10.1111/J.1467-8640.2011.00398.X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ci/KimOPKT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/KimPOBNT11,
author = {Jin{-}Dong Kim and
Sampo Pyysalo and
Tomoko Ohta and
Robert Bossy and
Ngan L. T. Nguyen and
Jun'ichi Tsujii},
editor = {Jun'ichi Tsujii and
Jin{-}Dong Kim and
Sampo Pyysalo},
title = {Overview of BioNLP Shared Task 2011},
booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon,
USA, June 24, 2011},
pages = {1--6},
publisher = {Association for Computational Linguistics},
year = {2011},
url = {https://aclanthology.org/W11-1801/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/KimPOBNT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/OhtaPT11a,
author = {Tomoko Ohta and
Sampo Pyysalo and
Jun'ichi Tsujii},
editor = {Jun'ichi Tsujii and
Jin{-}Dong Kim and
Sampo Pyysalo},
title = {Overview of the Epigenetics and Post-translational Modifications {(EPI)}
task of BioNLP Shared Task 2011},
booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon,
USA, June 24, 2011},
pages = {16--25},
publisher = {Association for Computational Linguistics},
year = {2011},
url = {https://aclanthology.org/W11-1803/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/OhtaPT11a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/PyysaloORSMWSTA11,
author = {Sampo Pyysalo and
Tomoko Ohta and
Rafal Rak and
Daniel E. Sullivan and
Chunhong Mao and
Chunxia Wang and
Bruno W. S. Sobral and
Jun'ichi Tsujii and
Sophia Ananiadou},
editor = {Jun'ichi Tsujii and
Jin{-}Dong Kim and
Sampo Pyysalo},
title = {Overview of the Infectious Diseases {(ID)} task of BioNLP Shared Task
2011},
booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon,
USA, June 24, 2011},
pages = {26--35},
publisher = {Association for Computational Linguistics},
year = {2011},
url = {https://aclanthology.org/W11-1804/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/PyysaloORSMWSTA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/PyysaloOT11,
author = {Sampo Pyysalo and
Tomoko Ohta and
Jun'ichi Tsujii},
editor = {Jun'ichi Tsujii and
Jin{-}Dong Kim and
Sampo Pyysalo},
title = {Overview of the Entity Relations {(REL)} supporting task of BioNLP
Shared Task 2011},
booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon,
USA, June 24, 2011},
pages = {83--88},
publisher = {Association for Computational Linguistics},
year = {2011},
url = {https://aclanthology.org/W11-1812/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/PyysaloOT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/OhtaPT11,
author = {Tomoko Ohta and
Sampo Pyysalo and
Jun'ichi Tsujii},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
John Pestian and
Jun'ichi Tsujii and
Bonnie L. Webber},
title = {From Pathways to Biomolecular Events: Opportunities and Challenges},
booktitle = {Proceedings of the 2011 Workshop on Biomedical Natural Language Processing,
BioNLP@ACL, Portland, Oregon, USA, June 23-24, 2011},
pages = {105--113},
publisher = {Association for Computational Linguistics},
year = {2011},
url = {https://aclanthology.org/W11-0214/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/OhtaPT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/StenetorpTPOKT11,
author = {Pontus Stenetorp and
Goran Topic and
Sampo Pyysalo and
Tomoko Ohta and
Jin{-}Dong Kim and
Jun'ichi Tsujii},
editor = {Jun'ichi Tsujii and
Jin{-}Dong Kim and
Sampo Pyysalo},
title = {BioNLP Shared Task 2011: Supporting Resources},
booktitle = {Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon,
USA, June 24, 2011},
pages = {112--120},
publisher = {Association for Computational Linguistics},
year = {2011},
url = {https://aclanthology.org/W11-1816/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/StenetorpTPOKT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/PyysaloOMT11,
author = {Sampo Pyysalo and
Tomoko Ohta and
Makoto Miwa and
Jun'ichi Tsujii},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
John Pestian and
Jun'ichi Tsujii and
Bonnie L. Webber},
title = {Towards Exhaustive Event Extraction for Protein Modifications},
booktitle = {Proceedings of the 2011 Workshop on Biomedical Natural Language Processing,
BioNLP@ACL, Portland, Oregon, USA, June 23-24, 2011},
pages = {114--123},
publisher = {Association for Computational Linguistics},
year = {2011},
url = {https://aclanthology.org/W11-0215/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/PyysaloOMT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OhtaMOMSPT10,
author = {Tomoko Ohta and
Takuya Matsuzaki and
Naoaki Okazaki and
Makoto Miwa and
Rune S{\ae}tre and
Sampo Pyysalo and
Jun'ichi Tsujii},
title = {Medie and Info-pubmed: 2010 update},
journal = {{BMC} Bioinform.},
volume = {11},
number = {{S-5}},
pages = {P7},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-S5-P7},
doi = {10.1186/1471-2105-11-S5-P7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OhtaMOMSPT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/WangKSPOT10,
author = {Yue Wang and
Jin{-}Dong Kim and
Rune S{\ae}tre and
Sampo Pyysalo and
Tomoko Ohta and
Jun'ichi Tsujii},
title = {Improving the Inter-Corpora Compatibility for protein Annotations},
journal = {J. Bioinform. Comput. Biol.},
volume = {8},
number = {5},
pages = {901--916},
year = {2010},
url = {https://doi.org/10.1142/S0219720010004999},
doi = {10.1142/S0219720010004999},
timestamp = {Tue, 02 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/WangKSPOT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/OhtaPKT10,
author = {Tomoko Ohta and
Sampo Pyysalo and
Jin{-}Dong Kim and
Jun'ichi Tsujii},
title = {A Re-Evaluation of Biomedical Named Entity-Term Relations},
journal = {J. Bioinform. Comput. Biol.},
volume = {8},
number = {5},
pages = {917--928},
year = {2010},
url = {https://doi.org/10.1142/S0219720010005014},
doi = {10.1142/S0219720010005014},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/OhtaPKT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/OhtaPMKT10,
author = {Tomoko Ohta and
Sampo Pyysalo and
Makoto Miwa and
Jin{-}Dong Kim and
Jun'ichi Tsujii},
editor = {K. Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
John Pestian and
Jun'ichi Tsujii and
Bonnie L. Webber},
title = {Event Extraction for Post-Translational Modifications},
booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
pages = {19--27},
publisher = {Association for Computational Linguistics},
year = {2010},
url = {https://aclanthology.org/W10-1903/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/OhtaPMKT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/PyysaloOCSMSTA10,
author = {Sampo Pyysalo and
Tomoko Ohta and
Han{-}Cheol Cho and
Daniel E. Sullivan and
Chunhong Mao and
Bruno W. S. Sobral and
Jun'ichi Tsujii and
Sophia Ananiadou},
editor = {K. Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
John Pestian and
Jun'ichi Tsujii and
Bonnie L. Webber},
title = {Towards Event Extraction from Full Texts on Infectious Diseases},
booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
pages = {132--140},
publisher = {Association for Computational Linguistics},
year = {2010},
url = {https://aclanthology.org/W10-1919/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/PyysaloOCSMSTA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/LandeghemPOP10,
author = {Sofie Van Landeghem and
Sampo Pyysalo and
Tomoko Ohta and
Yves Van de Peer},
editor = {K. Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
John Pestian and
Jun'ichi Tsujii and
Bonnie L. Webber},
title = {Integration of Static Relations to Enhance Event Extraction from Text},
booktitle = {Proceedings of the 2010 Workshop on Biomedical Natural Language Processing,
BioNLP@ACL 2010, Uppsala, Sweden, July 15, 2010},
pages = {144--152},
publisher = {Association for Computational Linguistics},
year = {2010},
url = {https://aclanthology.org/W10-1921/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/LandeghemPOP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/smbm/HoehndorfNPOOR10,
author = {Robert Hoehndorf and
Axel{-}Cyrille Ngonga Ngomo and
Sampo Pyysalo and
Tomoko Ohta and
Anika Oellrich and
Dietrich Rebholz{-}Schuhmann},
editor = {Nigel Collier and
Udo Hahn and
Dietrich Rebholz{-}Schuhmann and
Fabio Rinaldi and
Sampo Pyysalo},
title = {Applying ontology design patterns to the implementation of relations
in {GENIA}},
booktitle = {Proceedings of the Fourth International Symposium for Semantic Mining
in Biomedicine, Cambridge, United Kingdom, October, 2010},
series = {{CEUR} Workshop Proceedings},
volume = {714},
publisher = {CEUR-WS.org},
year = {2010},
url = {https://ceur-ws.org/Vol-714/Paper04\_Hoehndorf.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:16 +0100},
biburl = {https://dblp.org/rec/conf/smbm/HoehndorfNPOOR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/smbm/OhtaPMT10,
author = {Tomoko Ohta and
Sampo Pyysalo and
Makoto Miwa and
Jun'ichi Tsujii},
editor = {Nigel Collier and
Udo Hahn and
Dietrich Rebholz{-}Schuhmann and
Fabio Rinaldi and
Sampo Pyysalo},
title = {Event extraction for {DNA} methylation},
booktitle = {Proceedings of the Fourth International Symposium for Semantic Mining
in Biomedicine, Cambridge, United Kingdom, October, 2010},
series = {{CEUR} Workshop Proceedings},
volume = {714},
publisher = {CEUR-WS.org},
year = {2010},
url = {https://ceur-ws.org/Vol-714/Paper06\_Ohta.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/smbm/OhtaPMT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/smbm/PyysaloOT10,
author = {Sampo Pyysalo and
Tomoko Ohta and
Jun'ichi Tsujii},
editor = {Nigel Collier and
Udo Hahn and
Dietrich Rebholz{-}Schuhmann and
Fabio Rinaldi and
Sampo Pyysalo},
title = {An Analysis of gene/protein associations at PubMed scale},
booktitle = {Proceedings of the Fourth International Symposium for Semantic Mining
in Biomedicine, Cambridge, United Kingdom, October, 2010},
series = {{CEUR} Workshop Proceedings},
volume = {714},
publisher = {CEUR-WS.org},
year = {2010},
url = {https://ceur-ws.org/Vol-714/Paper07\_Pyysalo.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/smbm/PyysaloOT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/smbm/VinczeSMOF10,
author = {Veronika Vincze and
Gy{\"{o}}rgy Szarvas and
Gy{\"{o}}rgy M{\'{o}}ra and
Tomoko Ohta and
Rich{\'{a}}rd Farkas},
editor = {Nigel Collier and
Udo Hahn and
Dietrich Rebholz{-}Schuhmann and
Fabio Rinaldi and
Sampo Pyysalo},
title = {Linguistic scope-based and biological event-based speculation and
negation annotations in the Genia Event and BioScope corpora},
booktitle = {Proceedings of the Fourth International Symposium for Semantic Mining
in Biomedicine, Cambridge, United Kingdom, October, 2010},
series = {{CEUR} Workshop Proceedings},
volume = {714},
publisher = {CEUR-WS.org},
year = {2010},
url = {https://ceur-ws.org/Vol-714/Paper10\_Vincze.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/smbm/VinczeSMOF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/KimOPKT09,
author = {Jin{-}Dong Kim and
Tomoko Ohta and
Sampo Pyysalo and
Yoshinobu Kano and
Jun'ichi Tsujii},
title = {Overview of BioNLP'09 Shared Task on Event Extraction},
booktitle = {Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared
Task, BioNLP@HLT-NAACL 2009 - Shared Task, Boulder, Colorado, USA,
June 5, 2009},
pages = {1--9},
publisher = {Association for Computational Linguistics},
year = {2009},
url = {https://aclanthology.org/W09-1401/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/KimOPKT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/PyysaloOKT09,
author = {Sampo Pyysalo and
Tomoko Ohta and
Jin{-}Dong Kim and
Jun'ichi Tsujii},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
John Pestian and
Jun'ichi Tsujii and
Bonnie L. Webber},
title = {Static Relations: a Piece in the Biomedical Information Extraction
Puzzle},
booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder,
Colorado, USA, June 4-5, 2009},
pages = {1--9},
publisher = {Association for Computational Linguistics},
year = {2009},
url = {https://aclanthology.org/W09-1301/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/PyysaloOKT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/OhtaKPWT09,
author = {Tomoko Ohta and
Jin{-}Dong Kim and
Sampo Pyysalo and
Yue Wang and
Jun'ichi Tsujii},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
John Pestian and
Jun'ichi Tsujii and
Bonnie L. Webber},
title = {Incorporating GENETAG-style annotation to {GENIA} corpus},
booktitle = {Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, Boulder,
Colorado, USA, June 4-5, 2009},
pages = {106--107},
publisher = {Association for Computational Linguistics},
year = {2009},
url = {https://aclanthology.org/W09-1313/},
timestamp = {Tue, 02 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/OhtaKPWT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KimOT08,
author = {Jin{-}Dong Kim and
Tomoko Ohta and
Jun'ichi Tsujii},
title = {Corpus annotation for mining biomedical events from literature},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-10},
doi = {10.1186/1471-2105-9-10},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KimOT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/OdaKOOMTT08,
author = {Kanae Oda and
Jin{-}Dong Kim and
Tomoko Ohta and
Daisuke Okanohara and
Takuya Matsuzaki and
Yuka Tateisi and
Jun'ichi Tsujii},
title = {New challenges for text mining: mapping between text and manually
curated pathways},
journal = {{BMC} Bioinform.},
volume = {9},
number = {{S-3}},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-S3-S5},
doi = {10.1186/1471-2105-9-S3-S5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/OdaKOOMTT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apbc/KimOOT08,
author = {Jin{-}Dong Kim and
Tomoko Ohta and
Kanae Oda and
Jun'ichi Tsujii},
editor = {Alvis Brazma and
Satoru Miyano and
Tatsuya Akutsu},
title = {From Text to Pathway: Corpus Annotation for Knowledge Acquisition
from Biomedical Literature},
booktitle = {Proceedings of the 6th Asia-Pacific Bioinformatics Conference, {APBC}
2008, 14-17 January 2008, Kyoto, Japan},
series = {Advances in Bioinformatics and Computational Biology},
volume = {6},
pages = {165--176},
publisher = {Imperial College Press},
year = {2008},
url = {http://www.comp.nus.edu.sg/\%7Ewongls/psZ/apbc2008/apbc104a.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/apbc/KimOOT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/MiyaoOMTYNT06,
author = {Yusuke Miyao and
Tomoko Ohta and
Katsuya Masuda and
Yoshimasa Tsuruoka and
Kazuhiro Yoshida and
Takashi Ninomiya and
Jun'ichi Tsujii},
editor = {Nicoletta Calzolari and
Claire Cardie and
Pierre Isabelle},
title = {Semantic Retrieval for the Accurate Identification of Relational Concepts
in Massive Textbases},
booktitle = {{ACL} 2006, 21st International Conference on Computational Linguistics
and 44th Annual Meeting of the Association for Computational Linguistics,
Proceedings of the Conference, Sydney, Australia, 17-21 July 2006},
publisher = {The Association for Computer Linguistics},
year = {2006},
url = {https://aclanthology.org/P06-1128/},
doi = {10.3115/1220175.1220303},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl/MiyaoOMTYNT06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/OhtaMNTYMTYHKTT06,
author = {Tomoko Ohta and
Yusuke Miyao and
Takashi Ninomiya and
Yoshimasa Tsuruoka and
Akane Yakushiji and
Katsuya Masuda and
Jumpei Takeuchi and
Kazuhiro Yoshida and
Tadayoshi Hara and
Jin{-}Dong Kim and
Yuka Tateisi and
Jun'ichi Tsujii},
editor = {Nicoletta Calzolari and
Claire Cardie and
Pierre Isabelle},
title = {An Intelligent Search Engine and GUI-based Efficient {MEDLINE} Search
Tool Based on Deep Syntactic Parsing},
booktitle = {{ACL} 2006, 21st International Conference on Computational Linguistics
and 44th Annual Meeting of the Association for Computational Linguistics,
Proceedings of the Conference, Sydney, Australia, 17-21 July 2006},
publisher = {The Association for Computer Linguistics},
year = {2006},
url = {https://aclanthology.org/P06-4005/},
doi = {10.3115/1225403.1225408},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl/OhtaMNTYMTYHKTT06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/emnlp/YakushijiMOTT06,
author = {Akane Yakushiji and
Yusuke Miyao and
Tomoko Ohta and
Yuka Tateisi and
Jun'ichi Tsujii},
editor = {Dan Jurafsky and
{\'{E}}ric Gaussier},
title = {Automatic Construction of Predicate-argument Structure Patterns for
Biomedical Information Extraction},
booktitle = {{EMNLP} 2006, Proceedings of the 2006 Conference on Empirical Methods
in Natural Language Processing, 22-23 July 2006, Sydney, Australia},
pages = {284--292},
publisher = {{ACL}},
year = {2006},
url = {https://aclanthology.org/W06-1634/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/emnlp/YakushijiMOTT06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/OhtaTKYT06,
author = {Tomoko Ohta and
Yuka Tateisi and
Jin{-}Dong Kim and
Akane Yakushiji and
Jun'ichi Tsujii},
editor = {Nicoletta Calzolari and
Khalid Choukri and
Aldo Gangemi and
Bente Maegaard and
Joseph Mariani and
Jan Odijk and
Daniel Tapias},
title = {Linguistic and Biological Annotations of Biological Interaction Events},
booktitle = {Proceedings of the Fifth International Conference on Language Resources
and Evaluation, {LREC} 2006, Genoa, Italy, May 22-28, 2006},
pages = {1402--1405},
publisher = {European Language Resources Association {(ELRA)}},
year = {2006},
url = {http://www.lrec-conf.org/proceedings/lrec2006/summaries/570.html},
timestamp = {Mon, 19 Aug 2019 15:23:22 +0200},
biburl = {https://dblp.org/rec/conf/lrec/OhtaTKYT06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcnlp/TateisiYOT05,
author = {Yuka Tateisi and
Akane Yakushiji and
Tomoko Ohta and
Jun'ichi Tsujii},
title = {Syntax Annotation for the {GENIA} Corpus},
booktitle = {Natural Language Processing - {IJCNLP} 2005, Second International
Joint Conference, Jeju Island, Republic of Korea, October 11-13, 2005
- Companion Volume to the Proceedings of Conference including Posters/Demos
and tutorial abstracts},
publisher = {Asian Federation of Natural Language Processing},
year = {2005},
url = {https://aclanthology.org/I05-2038/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ijcnlp/TateisiYOT05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pci/TsuruokaTKOMAT05,
author = {Yoshimasa Tsuruoka and
Yuka Tateishi and
Jin{-}Dong Kim and
Tomoko Ohta and
John McNaught and
Sophia Ananiadou and
Jun'ichi Tsujii},
editor = {Panayiotis Bozanis and
Elias N. Houstis},
title = {Developing a Robust Part-of-Speech Tagger for Biomedical Text},
booktitle = {Advances in Informatics, 10th Panhellenic Conference on Informatics,
{PCI} 2005, Volos, Greece, November 11-13, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3746},
pages = {382--392},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11573036\_36},
doi = {10.1007/11573036\_36},
timestamp = {Tue, 14 May 2019 10:00:35 +0200},
biburl = {https://dblp.org/rec/conf/pci/TsuruokaTKOMAT05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl-linc/ErjavecKOTT03,
author = {Tomaz Erjavec and
Jin{-}Dong Kim and
Tomoko Ohta and
Yuka Tateisi and
Jun'ichi Tsujii},
title = {Stretching {TEI:} Converting the Genia Corpus},
booktitle = {Proceedings of 4th International Workshop on Linguistically Interpreted
Corpora, LINC@EACL 2003, Budapest, Hungary, April 13-14, 2003},
publisher = {The Association for Computer Linguistics},
year = {2003},
url = {https://aclanthology.org/W03-2416/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl-linc/ErjavecKOTT03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/ErjavecKOTT03,
author = {Tomaz Erjavec and
Jin{-}Dong Kim and
Tomoko Ohta and
Yuka Tateisi and
Jun'ichi Tsujii},
title = {Encoding Biomedical Resources in {TEI:} The Case of the {GENIA} Corpus},
booktitle = {Proceedings of the Workshop on Natural Language Processing in Biomedicine,
BioNLP@ACL 2003, Sapporo, Japan, July 2003},
pages = {97--104},
year = {2003},
url = {https://aclanthology.org/W03-1313/},
doi = {10.3115/1118958.1118971},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/ErjavecKOTT03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/KimOTT03,
author = {Jin{-}Dong Kim and
Tomoko Ohta and
Yuka Tateisi and
Jun'ichi Tsujii},
title = {{GENIA} corpus - a semantically annotated corpus for bio-textmining},
booktitle = {Proceedings of the Eleventh International Conference on Intelligent
Systems for Molecular Biology, June 29 - July 3, 2003, Brisbane, Australia},
pages = {180--182},
year = {2003},
url = {http://bioinformatics.oupjournals.org/cgi/content/abstract/19/suppl\_1/i180?etoc},
timestamp = {Tue, 05 Mar 2013 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/KimOTT03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/naacl/MasudaNMOT03,
author = {Katsuya Masuda and
Takashi Ninomiya and
Yusuke Miyao and
Tomoko Ohta and
Jun'ichi Tsujii},
editor = {Marti A. Hearst and
Mari Ostendorf},
title = {A Robust Retrieval Engine for Proximal and Structural Search},
booktitle = {Human Language Technology Conference of the North American Chapter
of the Association for Computational Linguistics, {HLT-NAACL} 2003,
Edmonton, Canada, May 27 - June 1, 2003},
publisher = {The Association for Computational Linguistics},
year = {2003},
url = {https://aclanthology.org/N03-2020/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/naacl/MasudaNMOT03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/coling/TateisiOCNT00,
author = {Yuka Tateisi and
Tomoko Ohta and
Nigel Collier and
Chikashi Nobata and
Jun'ichi Tsujii},
editor = {Paul Buitelaar and
K{\^{o}}iti Hasida},
title = {Building an Annotated Corpus in the Molecular-Biology Domain},
booktitle = {Proceedings of the {COLING-2000} Workshop on Semantic Annotation and
Intelligent Content, SAIC@COLING 2000, Centre Universitaire, Luxembourg,
August 5-6, 2000},
pages = {28--34},
publisher = {International Committee on Computational Linguistics},
year = {2000},
url = {https://aclanthology.org/W00-1704/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/coling/TateisiOCNT00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eacl/CollierPOTNOSIIT99,
author = {Nigel Collier and
Hyun Seok Park and
Norihiro Ogata and
Yuka Tateishi and
Chikashi Nobata and
Tomoko Ohta and
Tateshi Sekimizu and
Hisao Imai and
Katsutoshi Ibushi and
Jun'ichi Tsujii},
title = {The {GENIA} project: corpus-based knowledge acquisition and information
extraction from genome research papers},
booktitle = {{EACL} 1999, 9th Conference of the European Chapter of the Association
for Computational Linguistics, June 8-12, 1999, University of Bergen,
Bergen, Norway},
pages = {271--272},
publisher = {The Association for Computer Linguistics},
year = {1999},
url = {https://aclanthology.org/E99-1043/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/eacl/CollierPOTNOSIIT99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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