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BibTeX records: Ipek Oguz
@article{DBLP:journals/cbm/LiuBEMTWOLL23, author = {Yue Liu and Shunxing Bao and Dario J. Englot and Victoria L. Morgan and Warren D. Taylor and Ying Wei and Ipek Oguz and Bennett A. Landman and Ilwoo Lyu}, title = {Hierarchical particle optimization for cortical shape correspondence in temporal lobe resection}, journal = {Comput. Biol. Medicine}, volume = {152}, pages = {106414}, year = {2023}, url = {https://doi.org/10.1016/j.compbiomed.2022.106414}, doi = {10.1016/J.COMPBIOMED.2022.106414}, timestamp = {Wed, 01 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/cbm/LiuBEMTWOLL23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/DorentKIBRJGCMB23, author = {Reuben Dorent and Aaron Kujawa and Marina Ivory and Spyridon Bakas and Nicola Rieke and Samuel Joutard and Ben Glocker and M. Jorge Cardoso and Marc Modat and Kayhan Batmanghelich and Arseniy Belkov and Maria G. Baldeon Calisto and Jae Won Choi and Benoit M. Dawant and Hexin Dong and Sergio Escalera and Yubo Fan and Lasse Hansen and Mattias P. Heinrich and Smriti Joshi and Victoriya Kashtanova and Hyeongyu Kim and Satoshi Kondo and Christian N. Kruse and Susana K. Lai{-}Yuen and Hao Li and Han Liu and Buntheng Ly and Ipek Oguz and Hyungseob Shin and Boris Shirokikh and Zixian Su and Guotai Wang and Jianghao Wu and Yanwu Xu and Kai Yao and Li Zhang and S{\'{e}}bastien Ourselin and Jonathan Shapey and Tom Vercauteren}, title = {CrossMoDA 2021 challenge: Benchmark of cross-modality domain adaptation techniques for vestibular schwannoma and cochlea segmentation}, journal = {Medical Image Anal.}, volume = {83}, pages = {102628}, year = {2023}, url = {https://doi.org/10.1016/j.media.2022.102628}, doi = {10.1016/J.MEDIA.2022.102628}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/mia/DorentKIBRJGCMB23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/LiuLYFHDNXO23, author = {Han Liu and Hao Li and Xing Yao and Yubo Fan and Dewei Hu and Benoit M. Dawant and Vishwesh Nath and Zhoubing Xu and Ipek Oguz}, editor = {Hayit Greenspan and Anant Madabhushi and Parvin Mousavi and Septimiu Salcudean and James Duncan and Tanveer F. Syeda{-}Mahmood and Russell H. Taylor}, title = {COLosSAL: {A} Benchmark for Cold-Start Active Learning for 3D Medical Image Segmentation}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2023 - 26th International Conference, Vancouver, BC, Canada, October 8-12, 2023, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {14221}, pages = {25--34}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-43895-0\_3}, doi = {10.1007/978-3-031-43895-0\_3}, timestamp = {Thu, 05 Oct 2023 18:00:35 +0200}, biburl = {https://dblp.org/rec/conf/miccai/LiuLYFHDNXO23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/HuLLYWO23, author = {Dewei Hu and Hao Li and Han Liu and Xing Yao and Jiacheng Wang and Ipek Oguz}, editor = {M. Emre Celebi and Md Sirajus Salekin and Hyunwoo J. Kim and Shadi Albarqouni and Catarina Barata and Allan Halpern and Philipp Tschandl and Marc Combalia and Yuan Liu and Ghada Zamzmi and Joshua Levy and Huzefa Rangwala and Annika Reinke and Diya Wynn and Bennett A. Landman and Won{-}Ki Jeong and Yiqing Shen and Zhongying Deng and Spyridon Bakas and Xiaoxiao Li and Chen Qin and Nicola Rieke and Holger Roth and Daguang Xu}, title = {{MAP:} Domain Generalization via Meta-Learning on Anatomy-Consistent Pseudo-Modalities}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2023 Workshops - {ISIC} 2023, Care-AI 2023, MedAGI 2023, DeCaF 2023, Held in Conjunction with {MICCAI} 2023, Vancouver, BC, Canada, October 8-12, 2023, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {14393}, pages = {182--192}, publisher = {Springer}, year = {2023}, url = {https://doi.org/10.1007/978-3-031-47401-9\_18}, doi = {10.1007/978-3-031-47401-9\_18}, timestamp = {Tue, 19 Dec 2023 16:57:58 +0100}, biburl = {https://dblp.org/rec/conf/miccai/HuLLYWO23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midl/0007LO23, author = {Jiacheng Wang and Kathleen E. Larson and Ipek Oguz}, editor = {Ipek Oguz and Jack H. Noble and Xiaoxiao Li and Martin Styner and Christian Baumgartner and Mirabela Rusu and Tobias Heimann and Despina Kontos and Bennett A. Landman and Benoit M. Dawant}, title = {Self-Supervised {CSF} Inpainting for Improved Accuracy Validation of Cortical Surface Analyses}, booktitle = {Medical Imaging with Deep Learning, {MIDL} 2023, 10-12 July 2023, Nashville, TN, {USA}}, series = {Proceedings of Machine Learning Research}, volume = {227}, pages = {170--189}, publisher = {{PMLR}}, year = {2023}, url = {https://proceedings.mlr.press/v227/wang24a.html}, timestamp = {Tue, 20 Feb 2024 17:19:52 +0100}, biburl = {https://dblp.org/rec/conf/midl/0007LO23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/0007LLHLYBBO23, author = {Jiacheng Wang and Hao Li and Han Liu and Dewei Hu and Daiwei Lu and Keejin Yoon and Kelsey Barter and Francesca Bagnato and Ipek Oguz}, editor = {Olivier Colliot and Ivana Isgum}, title = {{SSL2:} self-supervised learning meets semi-supervised learning: multiple sclerosis segmentation in 7T-MRI from large-scale 3T-MRI}, booktitle = {Medical Imaging 2023: Image Processing, San Diego, CA, USA, February 19-23, 2023}, series = {{SPIE} Proceedings}, volume = {12464}, publisher = {{SPIE}}, year = {2023}, url = {https://doi.org/10.1117/12.2654522}, doi = {10.1117/12.2654522}, timestamp = {Mon, 18 Mar 2024 16:27:18 +0100}, biburl = {https://dblp.org/rec/conf/miip/0007LLHLYBBO23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/HuY0TO23, author = {Dewei Hu and Xing Yao and Jiacheng Wang and Yuankai K. Tao and Ipek Oguz}, editor = {Olivier Colliot and Ivana Isgum}, title = {Deep angiogram: trivializing retinal vessel segmentation}, booktitle = {Medical Imaging 2023: Image Processing, San Diego, CA, USA, February 19-23, 2023}, series = {{SPIE} Proceedings}, volume = {12464}, publisher = {{SPIE}}, year = {2023}, url = {https://doi.org/10.1117/12.2654214}, doi = {10.1117/12.2654214}, timestamp = {Mon, 18 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miip/HuY0TO23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/YaoLLHLL0SJLPO23, author = {Xing Yao and Ange Lou and Hao Li and Dewei Hu and Daiwei Lu and Han Liu and Jiacheng Wang and Zachary A. Stoebner and Hans J. Johnson and Jeffrey D. Long and Jane S. Paulsen and Ipek Oguz}, editor = {Olivier Colliot and Ivana Isgum}, title = {Novel application of the attention mechanism on medical image harmonization}, booktitle = {Medical Imaging 2023: Image Processing, San Diego, CA, USA, February 19-23, 2023}, series = {{SPIE} Proceedings}, volume = {12464}, publisher = {{SPIE}}, year = {2023}, url = {https://doi.org/10.1117/12.2654392}, doi = {10.1117/12.2654392}, timestamp = {Thu, 21 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miip/YaoLLHLL0SJLPO23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/ZhangLLHO23, author = {Huahong Zhang and Hao Li and Kathleen E. Larson and Kilian Hett and Ipek Oguz}, editor = {Olivier Colliot and Ivana Isgum}, title = {Domain generalization for robust {MS} lesion segmentation}, booktitle = {Medical Imaging 2023: Image Processing, San Diego, CA, USA, February 19-23, 2023}, series = {{SPIE} Proceedings}, volume = {12464}, publisher = {{SPIE}}, year = {2023}, url = {https://doi.org/10.1117/12.2654373}, doi = {10.1117/12.2654373}, timestamp = {Thu, 21 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miip/ZhangLLHO23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/midl/2023, editor = {Ipek Oguz and Jack H. Noble and Xiaoxiao Li and Martin Styner and Christian Baumgartner and Mirabela Rusu and Tobias Heimann and Despina Kontos and Bennett A. Landman and Benoit M. Dawant}, title = {Medical Imaging with Deep Learning, {MIDL} 2023, 10-12 July 2023, Nashville, TN, {USA}}, series = {Proceedings of Machine Learning Research}, volume = {227}, publisher = {{PMLR}}, year = {2023}, url = {http://proceedings.mlr.press/v227/}, timestamp = {Tue, 20 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/midl/2023.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2303-05026, author = {Jiacheng Wang and Hao Li and Han Liu and Dewei Hu and Daiwei Lu and Keejin Yoon and Kelsey Barter and Francesca Bagnato and Ipek Oguz}, title = {SSL{\^{}}2: Self-Supervised Learning meets Semi-Supervised Learning: Multiple Sclerosis Segmentation in 7T-MRI from large-scale 3T-MRI}, journal = {CoRR}, volume = {abs/2303.05026}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2303.05026}, doi = {10.48550/ARXIV.2303.05026}, eprinttype = {arXiv}, eprint = {2303.05026}, timestamp = {Tue, 26 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2303-05026.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2303-05777, author = {Jiacheng Wang and Kathleen E. Larson and Ipek Oguz}, title = {Self-Supervised {CSF} Inpainting with Synthetic Atrophy for Improved Accuracy Validation of Cortical Surface Analyses}, journal = {CoRR}, volume = {abs/2303.05777}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2303.05777}, doi = {10.48550/ARXIV.2303.05777}, eprinttype = {arXiv}, eprint = {2303.05777}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2303-05777.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2304-14030, author = {Han Liu and Zhoubing Xu and Riqiang Gao and Hao Li and Jianing Wang and Guillaume Chabin and Ipek Oguz and Sasa Grbic}, title = {{COSST:} Multi-organ Segmentation with Partially Labeled Datasets Using Comprehensive Supervisions and Self-training}, journal = {CoRR}, volume = {abs/2304.14030}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2304.14030}, doi = {10.48550/ARXIV.2304.14030}, eprinttype = {arXiv}, eprint = {2304.14030}, timestamp = {Wed, 03 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2304-14030.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2307-00240, author = {Dewei Hu and Hao Li and Han Liu and Xing Yao and Jiacheng Wang and Ipek Oguz}, title = {VesselMorph: Domain-Generalized Retinal Vessel Segmentation via Shape-Aware Representation}, journal = {CoRR}, volume = {abs/2307.00240}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2307.00240}, doi = {10.48550/ARXIV.2307.00240}, eprinttype = {arXiv}, eprint = {2307.00240}, timestamp = {Tue, 26 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2307-00240.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2307-00245, author = {Dewei Hu and Xing Yao and Jiacheng Wang and Yuankai K. Tao and Ipek Oguz}, title = {Deep Angiogram: Trivializing Retinal Vessel Segmentation}, journal = {CoRR}, volume = {abs/2307.00245}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2307.00245}, doi = {10.48550/ARXIV.2307.00245}, eprinttype = {arXiv}, eprint = {2307.00245}, timestamp = {Tue, 26 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2307-00245.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2307-12004, author = {Han Liu and Hao Li and Xing Yao and Yubo Fan and Dewei Hu and Benoit M. Dawant and Vishwesh Nath and Zhoubing Xu and Ipek Oguz}, title = {COLosSAL: {A} Benchmark for Cold-start Active Learning for 3D Medical Image Segmentation}, journal = {CoRR}, volume = {abs/2307.12004}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2307.12004}, doi = {10.48550/ARXIV.2307.12004}, eprinttype = {arXiv}, eprint = {2307.12004}, timestamp = {Tue, 01 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2307-12004.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2308-06377, author = {Hao Li and Han Liu and Dewei Hu and Xing Yao and Jiacheng Wang and Ipek Oguz}, title = {{CATS} v2: Hybrid encoders for robust medical segmentation}, journal = {CoRR}, volume = {abs/2308.06377}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2308.06377}, doi = {10.48550/ARXIV.2308.06377}, eprinttype = {arXiv}, eprint = {2308.06377}, timestamp = {Tue, 26 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2308-06377.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2308-10382, author = {Xing Yao and Han Liu and Dewei Hu and Daiwei Lu and Ange Lou and Hao Li and Ruining Deng and Gabriel Arenas and Baris U. Oguz and Nadav Schwartz and Brett C. Byram and Ipek Oguz}, title = {False Negative/Positive Control for {SAM} on Noisy Medical Images}, journal = {CoRR}, volume = {abs/2308.10382}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2308.10382}, doi = {10.48550/ARXIV.2308.10382}, eprinttype = {arXiv}, eprint = {2308.10382}, timestamp = {Wed, 30 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2308-10382.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2309-01286, author = {Dewei Hu and Hao Li and Han Liu and Xing Yao and Jiacheng Wang and Ipek Oguz}, title = {{MAP:} Domain Generalization via Meta-Learning on Anatomy-Consistent Pseudo-Modalities}, journal = {CoRR}, volume = {abs/2309.01286}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2309.01286}, doi = {10.48550/ARXIV.2309.01286}, eprinttype = {arXiv}, eprint = {2309.01286}, timestamp = {Tue, 26 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2309-01286.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2310-19721, author = {Hao Li and Han Liu and Dewei Hu and Jiacheng Wang and Ipek Oguz}, title = {Promise: Prompt-driven 3D Medical Image Segmentation Using Pretrained Image Foundation Models}, journal = {CoRR}, volume = {abs/2310.19721}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2310.19721}, doi = {10.48550/ARXIV.2310.19721}, eprinttype = {arXiv}, eprint = {2310.19721}, timestamp = {Fri, 03 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2310-19721.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2311-07806, author = {Hao Li and Han Liu and Dewei Hu and Jiacheng Wang and Ipek Oguz}, title = {Assessing Test-time Variability for Interactive 3D Medical Image Segmentation with Diverse Point Prompts}, journal = {CoRR}, volume = {abs/2311.07806}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2311.07806}, doi = {10.48550/ARXIV.2311.07806}, eprinttype = {arXiv}, eprint = {2311.07806}, timestamp = {Wed, 22 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2311-07806.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2311-12437, author = {Han Liu and Yubo Fan and Zhoubing Xu and Benoit M. Dawant and Ipek Oguz}, title = {Learning Site-specific Styles for Multi-institutional Unsupervised Cross-modality Domain Adaptation}, journal = {CoRR}, volume = {abs/2311.12437}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2311.12437}, doi = {10.48550/ARXIV.2311.12437}, eprinttype = {arXiv}, eprint = {2311.12437}, timestamp = {Wed, 29 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2311-12437.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2311-13052, author = {Jiacheng Wang and Hao Li and Dewei Hu and Yuankai K. Tao and Ipek Oguz}, title = {Novel {OCT} mosaicking pipeline with Feature- and Pixel-based registration}, journal = {CoRR}, volume = {abs/2311.13052}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2311.13052}, doi = {10.48550/ARXIV.2311.13052}, eprinttype = {arXiv}, eprint = {2311.13052}, timestamp = {Thu, 30 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2311-13052.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/brainles-ws/LiuFOD22, author = {Han Liu and Yubo Fan and Ipek Oguz and Benoit M. Dawant}, editor = {Spyridon Bakas and Alessandro Crimi and Ujjwal Baid and Sylwia Malec and Monika Pytlarz and Bhakti Baheti and Maximilian Zenk and Reuben Dorent}, title = {Enhancing Data Diversity for Self-training Based Unsupervised Cross-Modality Vestibular Schwannoma and Cochlea Segmentation}, booktitle = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 8th International Workshop, BrainLes 2022, Held in Conjunction with {MICCAI} 2022, Singapore, September 18, 2022, Revised Selected Papers, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {14092}, pages = {109--118}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-44153-0\_11}, doi = {10.1007/978-3-031-44153-0\_11}, timestamp = {Thu, 22 Feb 2024 20:44:54 +0100}, biburl = {https://dblp.org/rec/conf/brainles-ws/LiuFOD22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/LiHLWO22, author = {Hao Li and Dewei Hu and Han Liu and Jiacheng Wang and Ipek Oguz}, title = {Cats: Complementary {CNN} and Transformer Encoders for Segmentation}, booktitle = {19th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2022, Kolkata, India, March 28-31, 2022}, pages = {1--5}, publisher = {{IEEE}}, year = {2022}, url = {https://doi.org/10.1109/ISBI52829.2022.9761596}, doi = {10.1109/ISBI52829.2022.9761596}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/LiHLWO22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/mibam/ZhuLCLTO22, author = {Qibang Zhu and Hao Li and Nathan D. Cass and Nathan R. Lindquist and Kareem O. Tawfik and Ipek Oguz}, editor = {Barjor S. Gimi and Andrzej Kr{\'{o}}l}, title = {Acoustic neuroma segmentation using ensembled convolutional neural networks}, booktitle = {Medical Imaging 2022: Biomedical Applications in Molecular, Structural, and Functional Imaging, San Diego, CA, USA, February 20-24, 2022 / Online, March 21-27, 2022}, series = {{SPIE} Proceedings}, volume = {12036}, publisher = {{SPIE}}, year = {2022}, url = {https://doi.org/10.1117/12.2613402}, doi = {10.1117/12.2613402}, timestamp = {Thu, 07 Mar 2024 15:34:21 +0100}, biburl = {https://dblp.org/rec/conf/mibam/ZhuLCLTO22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/LiLHWJSGDVLPO22, author = {Hao Li and Han Liu and Dewei Hu and Jiacheng Wang and Hans J. Johnson and Omar Sherbini and Francesco Gavazzi and Russell D'Aiello and Adeline Vanderver and Jeffrey D. Long and Jane S. Paulsen and Ipek Oguz}, editor = {Ahmed Abdulkadir and Deepti R. Bathula and Nicha C. Dvornek and Mohamad Habes and Seyed Mostafa Kia and Vinod Kumar and Thomas Wolfers}, title = {Self-supervised Test-Time Adaptation for Medical Image Segmentation}, booktitle = {Machine Learning in Clinical Neuroimaging - 5th International Workshop, {MLCN} 2022, Held in Conjunction with {MICCAI} 2022, Singapore, September 18, 2022, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {13596}, pages = {32--41}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-17899-3\_4}, doi = {10.1007/978-3-031-17899-3\_4}, timestamp = {Tue, 10 Oct 2023 14:59:33 +0200}, biburl = {https://dblp.org/rec/conf/miccai/LiLHWJSGDVLPO22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/LiuFLWHCLZO22, author = {Han Liu and Yubo Fan and Hao Li and Jiacheng Wang and Dewei Hu and Can Cui and Ho Hin Lee and Huahong Zhang and Ipek Oguz}, editor = {Linwei Wang and Qi Dou and P. Thomas Fletcher and Stefanie Speidel and Shuo Li}, title = {ModDrop++: {A} Dynamic Filter Network with Intra-subject Co-training for Multiple Sclerosis Lesion Segmentation with Missing Modalities}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2022 - 25th International Conference, Singapore, September 18-22, 2022, Proceedings, Part {V}}, series = {Lecture Notes in Computer Science}, volume = {13435}, pages = {444--453}, publisher = {Springer}, year = {2022}, url = {https://doi.org/10.1007/978-3-031-16443-9\_43}, doi = {10.1007/978-3-031-16443-9\_43}, timestamp = {Tue, 26 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/LiuFLWHCLZO22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/midl/HuLLO22, author = {Dewei Hu and Hao Li and Han Liu and Ipek Oguz}, editor = {Ender Konukoglu and Bjoern H. Menze and Archana Venkataraman and Christian F. Baumgartner and Qi Dou and Shadi Albarqouni}, title = {Domain Generalization for Retinal Vessel Segmentation with Vector Field Transformer}, booktitle = {International Conference on Medical Imaging with Deep Learning, {MIDL} 2022, 6-8 July 2022, Zurich, Switzerland}, series = {Proceedings of Machine Learning Research}, volume = {172}, pages = {552--564}, publisher = {{PMLR}}, year = {2022}, url = {https://proceedings.mlr.press/v172/hu22a.html}, timestamp = {Fri, 17 Feb 2023 16:29:10 +0100}, biburl = {https://dblp.org/rec/conf/midl/HuLLO22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/HuTO22, author = {Dewei Hu and Yuankai K. Tao and Ipek Oguz}, editor = {Olivier Colliot and Ivana Isgum and Bennett A. Landman and Murray H. Loew}, title = {Unsupervised denoising of retinal {OCT} with diffusion probabilistic model}, booktitle = {Medical Imaging 2022: Image Processing, San Diego, CA, USA, February 20-24, 2022 / Online, March 21-27, 2022}, series = {{SPIE} Proceedings}, volume = {12032}, publisher = {{SPIE}}, year = {2022}, url = {https://doi.org/10.1117/12.2612235}, doi = {10.1117/12.2612235}, timestamp = {Thu, 14 Mar 2024 14:38:36 +0100}, biburl = {https://dblp.org/rec/conf/miip/HuTO22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/LiZHGJSGDVLPO22, author = {Hao Li and Qibang Zhu and Dewei Hu and Manasvi R. Gunnala and Hans J. Johnson and Omar Sherbini and Francesco Gavazzi and Russell D'Aiello and Adeline Vanderver and Jeffrey D. Long and Jane S. Paulsen and Ipek Oguz}, editor = {Olivier Colliot and Ivana Isgum and Bennett A. Landman and Murray H. Loew}, title = {Human brain extraction with deep learning}, booktitle = {Medical Imaging 2022: Image Processing, San Diego, CA, USA, February 20-24, 2022 / Online, March 21-27, 2022}, series = {{SPIE} Proceedings}, volume = {12032}, publisher = {{SPIE}}, year = {2022}, url = {https://doi.org/10.1117/12.2613277}, doi = {10.1117/12.2613277}, timestamp = {Thu, 21 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miip/LiZHGJSGDVLPO22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/StoebnerLHKO22, author = {Zachary A. Stoebner and Daiwei Lu and Seok Hee Hong and Nicholas L. Kavoussi and Ipek Oguz}, editor = {Olivier Colliot and Ivana Isgum and Bennett A. Landman and Murray H. Loew}, title = {Segmentation of kidney stones in endoscopic video feeds}, booktitle = {Medical Imaging 2022: Image Processing, San Diego, CA, USA, February 20-24, 2022 / Online, March 21-27, 2022}, series = {{SPIE} Proceedings}, volume = {12032}, publisher = {{SPIE}}, year = {2022}, url = {https://doi.org/10.1117/12.2613274}, doi = {10.1117/12.2613274}, timestamp = {Thu, 14 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miip/StoebnerLHKO22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2201-02831, author = {Reuben Dorent and Aaron Kujawa and Marina Ivory and Spyridon Bakas and Nicola Rieke and Samuel Joutard and Ben Glocker and Jorge Cardoso and Marc Modat and Kayhan Batmanghelich and Arseniy Belkov and Maria G. Baldeon Calisto and Jae Won Choi and Benoit M. Dawant and Hexin Dong and Sergio Escalera and Yubo Fan and Lasse Hansen and Mattias P. Heinrich and Smriti Joshi and Victoriya Kashtanova and Hyeongyu Kim and Satoshi Kondo and Christian N. Kruse and Susana K. Lai{-}Yuen and Hao Li and Han Liu and Buntheng Ly and Ipek Oguz and Hyungseob Shin and Boris Shirokikh and Zixian Su and Guotai Wang and Jianghao Wu and Yanwu Xu and Kai Yao and Li Zhang and S{\'{e}}bastien Ourselin and Jonathan Shapey and Tom Vercauteren}, title = {CrossMoDA 2021 challenge: Benchmark of Cross-Modality Domain Adaptation techniques for Vestibular Schwnannoma and Cochlea Segmentation}, journal = {CoRR}, volume = {abs/2201.02831}, year = {2022}, url = {https://arxiv.org/abs/2201.02831}, eprinttype = {arXiv}, eprint = {2201.02831}, timestamp = {Thu, 27 Jul 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2201-02831.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2201-11760, author = {Dewei Hu and Yuankai K. Tao and Ipek Oguz}, title = {Unsupervised Denoising of Retinal {OCT} with Diffusion Probabilistic Model}, journal = {CoRR}, volume = {abs/2201.11760}, year = {2022}, url = {https://arxiv.org/abs/2201.11760}, eprinttype = {arXiv}, eprint = {2201.11760}, timestamp = {Wed, 02 Feb 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2201-11760.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2203-04959, author = {Han Liu and Yubo Fan and Hao Li and Jiacheng Wang and Dewei Hu and Can Cui and Ho Hin Lee and Ipek Oguz}, title = {ModDrop++: {A} Dynamic Filter Network with Intra-subject Co-training for Multiple Sclerosis Lesion Segmentation with Missing Modalities}, journal = {CoRR}, volume = {abs/2203.04959}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2203.04959}, doi = {10.48550/ARXIV.2203.04959}, eprinttype = {arXiv}, eprint = {2203.04959}, timestamp = {Tue, 26 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2203-04959.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2204-14175, author = {Zachary A. Stoebner and Daiwei Lu and Seok Hee Hong and Nicholas L. Kavoussi and Ipek Oguz}, title = {Segmentation of kidney stones in endoscopic video feeds}, journal = {CoRR}, volume = {abs/2204.14175}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2204.14175}, doi = {10.48550/ARXIV.2204.14175}, eprinttype = {arXiv}, eprint = {2204.14175}, timestamp = {Mon, 02 May 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2204-14175.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2208-11572, author = {Hao Li and Dewei Hu and Han Liu and Jiacheng Wang and Ipek Oguz}, title = {Cats: Complementary {CNN} and Transformer Encoders for Segmentation}, journal = {CoRR}, volume = {abs/2208.11572}, year = {2022}, url = {https://doi.org/10.48550/arXiv.2208.11572}, doi = {10.48550/ARXIV.2208.11572}, eprinttype = {arXiv}, eprint = {2208.11572}, timestamp = {Tue, 26 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2208-11572.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/mia/HettTOMC21, author = {Kilian Hett and Vinh{-}Thong Ta and Ipek Oguz and Jos{\'{e}} V. Manj{\'{o}}n and Pierrick Coup{\'{e}}}, title = {Multi-scale graph-based grading for Alzheimer's disease prediction}, journal = {Medical Image Anal.}, volume = {67}, pages = {101850}, year = {2021}, url = {https://doi.org/10.1016/j.media.2020.101850}, doi = {10.1016/J.MEDIA.2020.101850}, timestamp = {Fri, 25 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/mia/HettTOMC21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/brainles-ws/LiHZLZO21, author = {Hao Li and Dewei Hu and Qibang Zhu and Kathleen E. Larson and Huahong Zhang and Ipek Oguz}, editor = {Alessandro Crimi and Spyridon Bakas}, title = {Unsupervised Cross-modality Domain Adaptation for Segmenting Vestibular Schwannoma and Cochlea with Data Augmentation and Model Ensemble}, booktitle = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 7th International Workshop, BrainLes 2021, Held in Conjunction with {MICCAI} 2021, Virtual Event, September 27, 2021, Revised Selected Papers, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {12963}, pages = {518--528}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-031-09002-8\_45}, doi = {10.1007/978-3-031-09002-8\_45}, timestamp = {Mon, 06 Nov 2023 12:57:51 +0100}, biburl = {https://dblp.org/rec/conf/brainles-ws/LiHZLZO21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/HuCLLTO21, author = {Dewei Hu and Can Cui and Hao Li and Kathleen E. Larson and Yuankai K. Tao and Ipek Oguz}, editor = {Marleen de Bruijne and Philippe C. Cattin and St{\'{e}}phane Cotin and Nicolas Padoy and Stefanie Speidel and Yefeng Zheng and Caroline Essert}, title = {{LIFE:} {A} Generalizable Autodidactic Pipeline for 3D {OCT-A} Vessel Segmentation}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2021 - 24th International Conference, Strasbourg, France, September 27 - October 1, 2021, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {12901}, pages = {514--524}, publisher = {Springer}, year = {2021}, url = {https://doi.org/10.1007/978-3-030-87193-2\_49}, doi = {10.1007/978-3-030-87193-2\_49}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/HuCLLTO21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/0003EMT0OLL21, author = {Yue Liu and Dario J. Englot and Victoria L. Morgan and Warren D. Taylor and Ying Wei and Ipek Oguz and Bennett A. Landman and Ilwoo Lyu}, editor = {Ivana Isgum and Bennett A. Landman}, title = {Establishing surface correspondence for post-surgical cortical thickness changes in temporal lobe epilepsy}, booktitle = {Medical Imaging 2021: Image Processing, Online, February 15-19, 2021}, series = {{SPIE} Proceedings}, volume = {11596}, publisher = {{SPIE}}, year = {2021}, url = {https://doi.org/10.1117/12.2580808}, doi = {10.1117/12.2580808}, timestamp = {Mon, 11 Mar 2024 15:57:50 +0100}, biburl = {https://dblp.org/rec/conf/miip/0003EMT0OLL21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/LarsonO21, author = {Kathleen E. Larson and Ipek Oguz}, editor = {Ivana Isgum and Bennett A. Landman}, title = {Synthetic atrophy for longitudinal surface-based cortical thickness measurement}, booktitle = {Medical Imaging 2021: Image Processing, Online, February 15-19, 2021}, series = {{SPIE} Proceedings}, volume = {11596}, publisher = {{SPIE}}, year = {2021}, url = {https://doi.org/10.1117/12.2580907}, doi = {10.1117/12.2580907}, timestamp = {Thu, 21 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miip/LarsonO21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/LiZJLPO21, author = {Hao Li and Huahong Zhang and Hans J. Johnson and Jeffrey D. Long and Jane S. Paulsen and Ipek Oguz}, editor = {Ivana Isgum and Bennett A. Landman}, title = {Longitudinal subcortical segmentation with deep learning}, booktitle = {Medical Imaging 2021: Image Processing, Online, February 15-19, 2021}, series = {{SPIE} Proceedings}, volume = {11596}, publisher = {{SPIE}}, year = {2021}, url = {https://doi.org/10.1117/12.2582340}, doi = {10.1117/12.2582340}, timestamp = {Thu, 21 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miip/LiZJLPO21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/LiZJLPO21a, author = {Hao Li and Huahong Zhang and Hans J. Johnson and Jeffrey D. Long and Jane S. Paulsen and Ipek Oguz}, editor = {Ivana Isgum and Bennett A. Landman}, title = {{MRI} subcortical segmentation in neurodegeneration with cascaded 3D CNNs}, booktitle = {Medical Imaging 2021: Image Processing, Online, February 15-19, 2021}, series = {{SPIE} Proceedings}, volume = {11596}, publisher = {{SPIE}}, year = {2021}, url = {https://doi.org/10.1117/12.2582005}, doi = {10.1117/12.2582005}, timestamp = {Thu, 21 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miip/LiZJLPO21a.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2107-04282, author = {Dewei Hu and Can Cui and Hao Li and Kathleen E. Larson and Yuankai K. Tao and Ipek Oguz}, title = {{LIFE:} {A} Generalizable Autodidactic Pipeline for 3D {OCT-A} Vessel Segmentation}, journal = {CoRR}, volume = {abs/2107.04282}, year = {2021}, url = {https://arxiv.org/abs/2107.04282}, eprinttype = {arXiv}, eprint = {2107.04282}, timestamp = {Thu, 22 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2107-04282.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2107-04288, author = {Dewei Hu and Joseph D. Malone and Yigit Atay and Yuankai K. Tao and Ipek Oguz}, title = {Retinal {OCT} Denoising with Pseudo-Multimodal Fusion Network}, journal = {CoRR}, volume = {abs/2107.04288}, year = {2021}, url = {https://arxiv.org/abs/2107.04288}, eprinttype = {arXiv}, eprint = {2107.04288}, timestamp = {Thu, 22 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2107-04288.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2109-12169, author = {Hao Li and Dewei Hu and Qibang Zhu and Kathleen E. Larson and Huahong Zhang and Ipek Oguz}, title = {Unsupervised Cross-Modality Domain Adaptation for Segmenting Vestibular Schwannoma and Cochlea with Data Augmentation and Model Ensemble}, journal = {CoRR}, volume = {abs/2109.12169}, year = {2021}, url = {https://arxiv.org/abs/2109.12169}, eprinttype = {arXiv}, eprint = {2109.12169}, timestamp = {Mon, 04 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2109-12169.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/brainles-ws/ZhangO20, author = {Huahong Zhang and Ipek Oguz}, editor = {Alessandro Crimi and Spyridon Bakas}, title = {Multiple Sclerosis Lesion Segmentation - {A} Survey of Supervised CNN-Based Methods}, booktitle = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - 6th International Workshop, BrainLes 2020, Held in Conjunction with {MICCAI} 2020, Lima, Peru, October 4, 2020, Revised Selected Papers, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {12658}, pages = {11--29}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-72084-1\_2}, doi = {10.1007/978-3-030-72084-1\_2}, timestamp = {Mon, 06 Nov 2023 15:27:23 +0100}, biburl = {https://dblp.org/rec/conf/brainles-ws/ZhangO20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/HettJCPLO20, author = {Kilian Hett and Hans J. Johnson and Pierrick Coup{\'{e}} and Jane S. Paulsen and Jeffrey D. Long and Ipek Oguz}, title = {Tensor-Based Grading: {A} Novel Patch-Based Grading Approach for the Analysis Of Deformation Fields in Huntington's Disease}, booktitle = {17th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2020, Iowa City, IA, USA, April 3-7, 2020}, pages = {1091--1095}, publisher = {{IEEE}}, year = {2020}, url = {https://doi.org/10.1109/ISBI45749.2020.9098692}, doi = {10.1109/ISBI45749.2020.9098692}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/HettJCPLO20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/PouchYAWOAYPWOG20, author = {Alison M. Pouch and Paul A. Yushkevich and Abdullah H. Aly and Alexander H. F. Woltersom and Edidiong Okon and Ahmed H. Aly and Natalie Yushkevich and Shobhana Parameshwaran and Jiancong Wang and Baris U. Oguz and James C. Gee and Ipek Oguz and Nadav Schwartz}, title = {Automated Meshing of Anatomical Shapes for Deformable Medial Modeling: Application to the Placenta in 3D Ultrasound}, booktitle = {17th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2020, Iowa City, IA, USA, April 3-7, 2020}, pages = {1842--1846}, publisher = {{IEEE}}, year = {2020}, url = {https://doi.org/10.1109/ISBI45749.2020.9098428}, doi = {10.1109/ISBI45749.2020.9098428}, timestamp = {Sun, 07 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isbi/PouchYAWOAYPWOG20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/ZhangBBO20, author = {Huahong Zhang and Rohit Bakshi and Francesca Bagnato and Ipek Oguz}, editor = {Mingxia Liu and Pingkun Yan and Chunfeng Lian and Xiaohuan Cao}, title = {Robust Multiple Sclerosis Lesion Inpainting with Edge Prior}, booktitle = {Machine Learning in Medical Imaging - 11th International Workshop, {MLMI} 2020, Held in Conjunction with {MICCAI} 2020, Lima, Peru, October 4, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12436}, pages = {120--129}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-59861-7\_13}, doi = {10.1007/978-3-030-59861-7\_13}, timestamp = {Tue, 18 Jan 2022 13:58:27 +0100}, biburl = {https://dblp.org/rec/conf/miccai/ZhangBBO20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/HuMATO20, author = {Dewei Hu and Joseph D. Malone and Yigit Atay and Yuankai K. Tao and Ipek Oguz}, editor = {Huazhu Fu and Mona Kathryn Garvin and Tom J. MacGillivray and Yanwu Xu and Yalin Zheng}, title = {Retinal {OCT} Denoising with Pseudo-Multimodal Fusion Network}, booktitle = {Ophthalmic Medical Image Analysis - 7th International Workshop, {OMIA} 2020, Held in Conjunction with {MICCAI} 2020, Lima, Peru, October 8, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12069}, pages = {125--135}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-63419-3\_13}, doi = {10.1007/978-3-030-63419-3\_13}, timestamp = {Tue, 30 Mar 2021 18:55:06 +0200}, biburl = {https://dblp.org/rec/conf/miccai/HuMATO20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/LiZHJLPO20, author = {Hao Li and Huahong Zhang and Dewei Hu and Hans J. Johnson and Jeffrey D. Long and Jane S. Paulsen and Ipek Oguz}, editor = {Seyed Mostafa Kia and Hassan Mohy{-}ud{-}Din and Ahmed Abdulkadir and Cher Bass and Mohamad Habes and Jane Maryam Rondina and Chantal M. W. Tax and Hongzhi Wang and Thomas Wolfers and Saima Rathore and Madhura Ingalhalikar}, title = {Generalizing {MRI} Subcortical Segmentation to Neurodegeneration}, booktitle = {Machine Learning in Clinical Neuroimaging and Radiogenomics in Neuro-oncology - Third International Workshop, {MLCN} 2020, and Second International Workshop, {RNO-AI} 2020, Held in Conjunction with {MICCAI} 2020, Lima, Peru, October 4-8, 2020, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {12449}, pages = {139--147}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-66843-3\_14}, doi = {10.1007/978-3-030-66843-3\_14}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/LiZHJLPO20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/HettGJPLO20, author = {Kilian Hett and R{\'{e}}mi Giraud and Hans J. Johnson and Jane S. Paulsen and Jeffrey D. Long and Ipek Oguz}, editor = {Anne L. Martel and Purang Abolmaesumi and Danail Stoyanov and Diana Mateus and Maria A. Zuluaga and S. Kevin Zhou and Daniel Racoceanu and Leo Joskowicz}, title = {Patch-Based Abnormality Maps for Improved Deep Learning-Based Classification of Huntington's Disease}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020, Proceedings, Part {VII}}, series = {Lecture Notes in Computer Science}, volume = {12267}, pages = {636--645}, publisher = {Springer}, year = {2020}, url = {https://doi.org/10.1007/978-3-030-59728-3\_62}, doi = {10.1007/978-3-030-59728-3\_62}, timestamp = {Mon, 26 Apr 2021 14:27:06 +0200}, biburl = {https://dblp.org/rec/conf/miccai/HettGJPLO20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/OguzMAT20, author = {Ipek Oguz and Joseph D. Malone and Yigit Atay and Yuankai K. Tao}, editor = {Ivana Isgum and Bennett A. Landman}, title = {Self-fusion for {OCT} noise reduction}, booktitle = {Medical Imaging 2020: Image Processing, Houston, TX, USA, February 15-20, 2020}, series = {{SPIE} Proceedings}, volume = {11313}, pages = {113130C}, publisher = {{SPIE}}, year = {2020}, url = {https://doi.org/10.1117/12.2549472}, doi = {10.1117/12.2549472}, timestamp = {Tue, 21 Jul 2020 15:32:21 +0200}, biburl = {https://dblp.org/rec/conf/miip/OguzMAT20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/UffordVO20, author = {Kathryn Ufford and Simon N. Vandekar and Ipek Oguz}, editor = {Ivana Isgum and Bennett A. Landman}, title = {Joint intensity fusion with normalized cross-correlation metric for cross-modality {MRI} synthesis (Conference Presentation)}, booktitle = {Medical Imaging 2020: Image Processing, Houston, TX, USA, February 15-20, 2020}, series = {{SPIE} Proceedings}, volume = {11313}, pages = {1131304}, publisher = {{SPIE}}, year = {2020}, url = {https://doi.org/10.1117/12.2550009}, doi = {10.1117/12.2550009}, timestamp = {Thu, 28 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miip/UffordVO20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2001-08651, author = {Kilian Hett and Hans J. Johnson and Pierrick Coup{\'{e}} and Jane S. Paulsen and Jeffrey D. Long and Ipek Oguz}, title = {Tensor-Based Grading: {A} Novel Patch-Based Grading Approach for the Analysis of Deformation Fields in Huntington's Disease}, journal = {CoRR}, volume = {abs/2001.08651}, year = {2020}, url = {https://arxiv.org/abs/2001.08651}, eprinttype = {arXiv}, eprint = {2001.08651}, timestamp = {Fri, 24 Jan 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2001-08651.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2012-08317, author = {Huahong Zhang and Ipek Oguz}, title = {Multiple Sclerosis Lesion Segmentation - {A} Survey of Supervised CNN-Based Methods}, journal = {CoRR}, volume = {abs/2012.08317}, year = {2020}, url = {https://arxiv.org/abs/2012.08317}, eprinttype = {arXiv}, eprint = {2012.08317}, timestamp = {Tue, 05 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2012-08317.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ni/YushkevichPOMSS19, author = {Paul A. Yushkevich and Artem Pashchinskiy and Ipek Oguz and Suyash Mohan and J. Eric Schmitt and Joel M. Stein and Dzenan Zukic and Jared Vicory and Matthew McCormick and Natalie Yushkevich and Nadav Schwartz and Yang Gao and Guido Gerig}, title = {User-Guided Segmentation of Multi-modality Medical Imaging Datasets with {ITK-SNAP}}, journal = {Neuroinformatics}, volume = {17}, number = {1}, pages = {83--102}, year = {2019}, url = {https://doi.org/10.1007/s12021-018-9385-x}, doi = {10.1007/S12021-018-9385-X}, timestamp = {Mon, 20 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/ni/YushkevichPOMSS19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/ZhangVBCBSHO19, author = {Huahong Zhang and Alessandra M. Valcarcel and Rohit Bakshi and Renxin Chu and Francesca Bagnato and Russell T. Shinohara and Kilian Hett and Ipek Oguz}, editor = {Dinggang Shen and Tianming Liu and Terry M. Peters and Lawrence H. Staib and Caroline Essert and Sean Zhou and Pew{-}Thian Yap and Ali R. Khan}, title = {Multiple Sclerosis Lesion Segmentation with Tiramisu and 2.5D Stacked Slices}, booktitle = {Medical Image Computing and Computer Assisted Intervention - {MICCAI} 2019 - 22nd International Conference, Shenzhen, China, October 13-17, 2019, Proceedings, Part {III}}, series = {Lecture Notes in Computer Science}, volume = {11766}, pages = {338--346}, publisher = {Springer}, year = {2019}, url = {https://doi.org/10.1007/978-3-030-32248-9\_38}, doi = {10.1007/978-3-030-32248-9\_38}, timestamp = {Mon, 19 Feb 2024 14:24:13 +0100}, biburl = {https://dblp.org/rec/conf/miccai/ZhangVBCBSHO19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/midl/2019, editor = {M. Jorge Cardoso and Aasa Feragen and Ben Glocker and Ender Konukoglu and Ipek Oguz and Gozde B. Unal and Tom Vercauteren}, title = {International Conference on Medical Imaging with Deep Learning, {MIDL} 2019, 8-10 July 2019, London, United Kingdom}, series = {Proceedings of Machine Learning Research}, volume = {102}, publisher = {{PMLR}}, year = {2019}, url = {http://proceedings.mlr.press/v102/}, timestamp = {Mon, 08 Jul 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/midl/2019.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1903-03929, author = {Satyananda Kashyap and Ipek Oguz and Honghai Zhang and Milan Sonka}, title = {Automated Segmentation of Knee {MRI} Using Hierarchical Classifiers and Just Enough Interaction Based Learning: Data from Osteoarthritis Initiative}, journal = {CoRR}, volume = {abs/1903.03929}, year = {2019}, url = {http://arxiv.org/abs/1903.03929}, eprinttype = {arXiv}, eprint = {1903.03929}, timestamp = {Sun, 31 Mar 2019 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-1903-03929.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-1907-08612, author = {M. Jorge Cardoso and Aasa Feragen and Ben Glocker and Ender Konukoglu and Ipek Oguz and Gozde B. Unal and Tom Vercauteren}, title = {Medical Imaging with Deep Learning: {MIDL} 2019 - Extended Abstract Track}, journal = {CoRR}, volume = {abs/1907.08612}, year = {2019}, url = {http://arxiv.org/abs/1907.08612}, eprinttype = {arXiv}, eprint = {1907.08612}, timestamp = {Tue, 30 Jul 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-1907-08612.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/OguzWYPGYSO18, author = {Baris U. Oguz and Jiancong Wang and Natalie Yushkevich and Alison M. Pouch and James C. Gee and Paul A. Yushkevich and Nadav Schwartz and Ipek Oguz}, editor = {Andrew Melbourne and Roxane Licandro and Matthew D. DiFranco and Paolo Rota and Melanie Gau and Martin Kampel and Rosalind Aughwane and Pim Moeskops and Ernst Schwartz and Emma C. Robinson and Antonios Makropoulos}, title = {Combining Deep Learning and Multi-atlas Label Fusion for Automated Placenta Segmentation from 3DUS}, booktitle = {Data Driven Treatment Response Assessment - and - Preterm, Perinatal, and Paediatric Image Analysis - First International Workshop, {DATRA} 2018 - and - Third International Workshop, {PIPPI} 2018, Held in Conjunction with {MICCAI} 2018, Granada, Spain, September 16, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11076}, pages = {138--148}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-030-00807-9\_14}, doi = {10.1007/978-3-030-00807-9\_14}, timestamp = {Sun, 25 Oct 2020 23:09:57 +0100}, biburl = {https://dblp.org/rec/conf/miccai/OguzWYPGYSO18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/miccai/2018sashimi, editor = {Ali Gooya and Orcun Goksel and Ipek Oguz and Ninon Burgos}, title = {Simulation and Synthesis in Medical Imaging - Third International Workshop, {SASHIMI} 2018, Held in Conjunction with {MICCAI} 2018, Granada, Spain, September 16, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11037}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-030-00536-8}, doi = {10.1007/978-3-030-00536-8}, isbn = {978-3-030-00535-1}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/2018sashimi.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/miccai/2018mlcn, editor = {Danail Stoyanov and Zeike Taylor and Seyed Mostafa Kia and Ipek Oguz and Mauricio Reyes and Anne L. Martel and Lena Maier{-}Hein and Andre F. Marquand and Edouard Duchesnay and Tommy L{\"{o}}fstedt and Bennett A. Landman and M. Jorge Cardoso and Carlos A. Silva and S{\'{e}}rgio Pereira and Raphael Meier}, title = {Understanding and Interpreting Machine Learning in Medical Image Computing Applications - First International Workshops {MLCN} 2018, {DLF} 2018, and iMIMIC 2018, Held in Conjunction with {MICCAI} 2018, Granada, Spain, September 16-20, 2018, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {11038}, publisher = {Springer}, year = {2018}, url = {https://doi.org/10.1007/978-3-030-02628-8}, doi = {10.1007/978-3-030-02628-8}, isbn = {978-3-030-02627-1}, timestamp = {Fri, 05 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/2018mlcn.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cvpr/IsackVOSB17, author = {Hossam N. Isack and Olga Veksler and Ipek Oguz and Milan Sonka and Yuri Boykov}, title = {Efficient Optimization for Hierarchically-Structured Interacting Segments {(HINTS)}}, booktitle = {2017 {IEEE} Conference on Computer Vision and Pattern Recognition, {CVPR} 2017, Honolulu, HI, USA, July 21-26, 2017}, pages = {4981--4989}, publisher = {{IEEE} Computer Society}, year = {2017}, url = {https://doi.org/10.1109/CVPR.2017.529}, doi = {10.1109/CVPR.2017.529}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cvpr/IsackVOSB17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/OguzCPRSCYSP17, author = {Ipek Oguz and Aaron Carass and Dzung L. Pham and Snehashis Roy and Nagesh Subbana and Peter A. Calabresi and Paul A. Yushkevich and Russell T. Shinohara and Jerry L. Prince}, editor = {Alessandro Crimi and Spyridon Bakas and Hugo J. Kuijf and Bjoern H. Menze and Mauricio Reyes}, title = {Dice Overlap Measures for Objects of Unknown Number: Application to Lesion Segmentation}, booktitle = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - Third International Workshop, BrainLes 2017, Held in Conjunction with {MICCAI} 2017, Quebec City, QC, Canada, September 14, 2017, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {10670}, pages = {3--14}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-75238-9\_1}, doi = {10.1007/978-3-319-75238-9\_1}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/OguzCPRSCYSP17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/FleishmanVPRCYS17, author = {Greg M. Fleishman and Alessandra Valcarcel and Dzung L. Pham and Snehashis Roy and Peter A. Calabresi and Paul A. Yushkevich and Russell T. Shinohara and Ipek Oguz}, editor = {Alessandro Crimi and Spyridon Bakas and Hugo J. Kuijf and Bjoern H. Menze and Mauricio Reyes}, title = {Joint Intensity Fusion Image Synthesis Applied to Multiple Sclerosis Lesion Segmentation}, booktitle = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries - Third International Workshop, BrainLes 2017, Held in Conjunction with {MICCAI} 2017, Quebec City, QC, Canada, September 14, 2017, Revised Selected Papers}, series = {Lecture Notes in Computer Science}, volume = {10670}, pages = {43--54}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-75238-9\_4}, doi = {10.1007/978-3-319-75238-9\_4}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/FleishmanVPRCYS17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/DongOSCSY17, author = {Mengjin Dong and Ipek Oguz and Nagesh Subbana and Peter A. Calabresi and Russell T. Shinohara and Paul A. Yushkevich}, editor = {Guorong Wu and Brent C. Munsell and Yiqiang Zhan and Wenjia Bai and Gerard Sanroma and Pierrick Coup{\'{e}}}, title = {Multiple Sclerosis Lesion Segmentation Using Joint Label Fusion}, booktitle = {Patch-Based Techniques in Medical Imaging - Third International Workshop, Patch-MI 2017, Held in Conjunction with {MICCAI} 2017, Quebec City, QC, Canada, September 14, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10530}, pages = {138--145}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67434-6\_16}, doi = {10.1007/978-3-319-67434-6\_16}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/DongOSCSY17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/ChenWOVG17, author = {Min Chen and Jiancong Wang and Ipek Oguz and Brian L. Vanderbeek and James C. Gee}, editor = {M. Jorge Cardoso and Tal Arbel and Andrew Melbourne and Hrvoje Bogunovic and Pim Moeskops and Xinjian Chen and Ernst Schwartz and Mona Kathryn Garvin and Emma C. Robinson and Emanuele Trucco and Michael Ebner and Yanwu Xu and Antonios Makropoulos and Adrien E. Desjardins and Tom Vercauteren}, title = {Automated Segmentation of the Choroid in {EDI-OCT} Images with Retinal Pathology Using Convolution Neural Networks}, booktitle = {Fetal, Infant and Ophthalmic Medical Image Analysis - International Workshop, {FIFI} 2017, and 4th International Workshop, {OMIA} 2017, Held in Conjunction with {MICCAI} 2017, Qu{\'{e}}bec City, QC, Canada, September 14, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10554}, pages = {177--184}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67561-9\_20}, doi = {10.1007/978-3-319-67561-9\_20}, timestamp = {Fri, 18 Mar 2022 08:05:49 +0100}, biburl = {https://dblp.org/rec/conf/miccai/ChenWOVG17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/OguzSYO17, author = {Baris U. Oguz and Russell T. Shinohara and Paul A. Yushkevich and Ipek Oguz}, editor = {Qian Wang and Yinghuan Shi and Heung{-}Il Suk and Kenji Suzuki}, title = {Gradient Boosted Trees for Corrective Learning}, booktitle = {Machine Learning in Medical Imaging - 8th International Workshop, {MLMI} 2017, Held in Conjunction with {MICCAI} 2017, Quebec City, QC, Canada, September 10, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10541}, pages = {203--211}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-67389-9\_24}, doi = {10.1007/978-3-319-67389-9\_24}, timestamp = {Wed, 16 Mar 2022 23:56:10 +0100}, biburl = {https://dblp.org/rec/conf/miccai/OguzSYO17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/GuoKSO17, author = {Zhihui Guo and Satyananda Kashyap and Milan Sonka and Ipek Oguz}, editor = {Martin A. Styner and Elsa D. Angelini}, title = {Machine learning in a graph framework for subcortical segmentation}, booktitle = {Medical Imaging 2017: Image Processing, Orlando, Florida, United States, 11-16 February 2017}, series = {{SPIE} Proceedings}, volume = {10133}, pages = {101330H}, publisher = {{SPIE}}, year = {2017}, url = {https://doi.org/10.1117/12.2254874}, doi = {10.1117/12.2254874}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miip/GuoKSO17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@proceedings{DBLP:conf/ipmi/2017, editor = {Marc Niethammer and Martin Styner and Stephen R. Aylward and Hongtu Zhu and Ipek Oguz and Pew{-}Thian Yap and Dinggang Shen}, title = {Information Processing in Medical Imaging - 25th International Conference, {IPMI} 2017, Boone, NC, USA, June 25-30, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10265}, publisher = {Springer}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-59050-9}, doi = {10.1007/978-3-319-59050-9}, isbn = {978-3-319-59049-3}, timestamp = {Tue, 14 May 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/ipmi/2017.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/IsackVOSB17, author = {Hossam N. Isack and Olga Veksler and Ipek Oguz and Milan Sonka and Yuri Boykov}, title = {Efficient optimization for Hierarchically-structured Interacting Segments {(HINTS)}}, journal = {CoRR}, volume = {abs/1703.10530}, year = {2017}, url = {http://arxiv.org/abs/1703.10530}, eprinttype = {arXiv}, eprint = {1703.10530}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/IsackVOSB17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cars/OguzCDPFVSW16, author = {Ipek Oguz and Joshua E. Cates and Manasi Datar and Beatriz Paniagua and P. Thomas Fletcher and Clement Vachet and Martin Styner and Ross T. Whitaker}, title = {Entropy-based particle correspondence for shape populations}, journal = {Int. J. Comput. Assist. Radiol. Surg.}, volume = {11}, number = {7}, pages = {1221--1232}, year = {2016}, url = {https://doi.org/10.1007/s11548-015-1319-6}, doi = {10.1007/S11548-015-1319-6}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/cars/OguzCDPFVSW16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/KashyapOS16, author = {Satyananda Kashyap and Ipek Oguz and Milan Sonka}, title = {Statistical shape analysis of automatically segmented femur bones: Data from the osteoarthritis initiative}, booktitle = {13th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2016, Prague, Czech Republic, April 13-16, 2016}, pages = {651--655}, publisher = {{IEEE}}, year = {2016}, url = {https://doi.org/10.1109/ISBI.2016.7493351}, doi = {10.1109/ISBI.2016.7493351}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isbi/KashyapOS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/KashyapOZS16, author = {Satyananda Kashyap and Ipek Oguz and Honghai Zhang and Milan Sonka}, editor = {S{\'{e}}bastien Ourselin and Leo Joskowicz and Mert R. Sabuncu and G{\"{o}}zde B. {\"{U}}nal and William M. Wells III}, title = {Automated Segmentation of Knee {MRI} Using Hierarchical Classifiers and Just Enough Interaction Based Learning: Data from Osteoarthritis Initiative}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2016 - 19th International Conference, Athens, Greece, October 17-21, 2016, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {9901}, pages = {344--351}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-46723-8\_40}, doi = {10.1007/978-3-319-46723-8\_40}, timestamp = {Fri, 08 Apr 2022 11:01:35 +0200}, biburl = {https://dblp.org/rec/conf/miccai/KashyapOZS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/OguzKWYS16, author = {Ipek Oguz and Satyananda Kashyap and Hongzhi Wang and Paul A. Yushkevich and Milan Sonka}, editor = {S{\'{e}}bastien Ourselin and Leo Joskowicz and Mert R. Sabuncu and G{\"{o}}zde B. {\"{U}}nal and William M. Wells III}, title = {Globally Optimal Label Fusion with Shape Priors}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2016 - 19th International Conference, Athens, Greece, October 17-21, 2016, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {9901}, pages = {538--546}, year = {2016}, url = {https://doi.org/10.1007/978-3-319-46723-8\_62}, doi = {10.1007/978-3-319-46723-8\_62}, timestamp = {Wed, 06 Jan 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miccai/OguzKWYS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/LeeKOS16, author = {Joohwi Lee and Sun Hyung Kim and Ipek Oguz and Martin Styner}, editor = {Martin A. Styner and Elsa D. Angelini}, title = {Enhanced cortical thickness measurements for rodent brains via Lagrangian-based {RK4} streamline computation}, booktitle = {Medical Imaging 2016: Image Processing, San Diego, California, USA, February 27, 2016}, series = {{SPIE} Proceedings}, volume = {9784}, pages = {97840B}, publisher = {{SPIE}}, year = {2016}, url = {https://doi.org/10.1117/12.2216420}, doi = {10.1117/12.2216420}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miip/LeeKOS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/OguzZAS16, author = {Ipek Oguz and Li Zhang and Michael D. Abr{\`{a}}moff and Milan Sonka}, editor = {Martin A. Styner and Elsa D. Angelini}, title = {Optimal retinal cyst segmentation from {OCT} images}, booktitle = {Medical Imaging 2016: Image Processing, San Diego, California, USA, February 27, 2016}, series = {{SPIE} Proceedings}, volume = {9784}, pages = {97841E}, publisher = {{SPIE}}, year = {2016}, url = {https://doi.org/10.1117/12.2217355}, doi = {10.1117/12.2217355}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miip/OguzZAS16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/OguzSSSS15, author = {Ipek Oguz and Martin Styner and Mar Sanchez and Yundi Shi and Milan Sonka}, editor = {S{\'{e}}bastien Ourselin and Martin Andreas Styner}, title = {{LOGISMOS-B} for primates: primate cortical surface reconstruction and thickness measurement}, booktitle = {Medical Imaging 2015: Image Processing, Orlando, Florida, USA, February 24-26, 2015}, series = {{SPIE} Proceedings}, volume = {9413}, pages = {941313}, publisher = {{SPIE}}, year = {2015}, url = {https://doi.org/10.1117/12.2082327}, doi = {10.1117/12.2082327}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miip/OguzSSSS15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/fini/OguzFMBLGJS14, author = {Ipek Oguz and Mahshid Farzinfar and Joy T. Matsui and Fran{\c{c}}ois Budin and Zhexing Liu and Guido Gerig and Hans J. Johnson and Martin Andreas Styner}, title = {DTIPrep: quality control of diffusion-weighted images}, journal = {Frontiers Neuroinformatics}, volume = {8}, pages = {4}, year = {2014}, url = {https://doi.org/10.3389/fninf.2014.00004}, doi = {10.3389/FNINF.2014.00004}, timestamp = {Thu, 28 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/fini/OguzFMBLGJS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jmiv/SkwererBHMOOPPM14, author = {Sean Skwerer and Elizabeth Bullitt and Stephan Huckemann and Ezra Miller and Ipek Oguz and Megan Owen and Vic Patrangenaru and J. Scott Provan and J. S. Marron}, title = {Tree-Oriented Analysis of Brain Artery Structure}, journal = {J. Math. Imaging Vis.}, volume = {50}, number = {1-2}, pages = {126--143}, year = {2014}, url = {https://doi.org/10.1007/s10851-013-0473-0}, doi = {10.1007/S10851-013-0473-0}, timestamp = {Mon, 08 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jmiv/SkwererBHMOOPPM14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tmi/OguzS14, author = {Ipek Oguz and Milan Sonka}, title = {{LOGISMOS-B:} Layered Optimal Graph Image Segmentation of Multiple Objects and Surfaces for the Brain}, journal = {{IEEE} Trans. Medical Imaging}, volume = {33}, number = {6}, pages = {1220--1235}, year = {2014}, url = {https://doi.org/10.1109/TMI.2014.2304499}, doi = {10.1109/TMI.2014.2304499}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tmi/OguzS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/OguzS14, author = {Ipek Oguz and Milan Sonka}, editor = {Polina Golland and Nobuhiko Hata and Christian Barillot and Joachim Hornegger and Robert D. Howe}, title = {Robust Cortical Thickness Measurement with {LOGISMOS-B}}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2014 - 17th International Conference, Boston, MA, USA, September 14-18, 2014, Proceedings, Part {I}}, series = {Lecture Notes in Computer Science}, volume = {8673}, pages = {722--730}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-10404-1\_90}, doi = {10.1007/978-3-319-10404-1\_90}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/OguzS14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/fini/BudinHRGOO13, author = {Fran{\c{c}}ois Budin and Marion Hoogstoel and Patrick Reynolds and Michael Grauer and Shonagh K. O'Leary{-}Moore and Ipek Oguz}, title = {Fully automated rodent brain {MR} image processing pipeline on a Midas server: from acquired images to region-based statistics}, journal = {Frontiers Neuroinformatics}, volume = {7}, pages = {15}, year = {2013}, url = {https://doi.org/10.3389/fninf.2013.00015}, doi = {10.3389/FNINF.2013.00015}, timestamp = {Thu, 28 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/fini/BudinHRGOO13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/fini/GrauerRHBSO13, author = {Michael Grauer and Patrick Reynolds and Marion Hoogstoel and Fran{\c{c}}ois Budin and Martin Andreas Styner and Ipek Oguz}, title = {A midas plugin to enable construction of reproducible web-based image processing pipelines}, journal = {Frontiers Neuroinformatics}, volume = {7}, pages = {46}, year = {2013}, url = {https://doi.org/10.3389/fninf.2013.00046}, doi = {10.3389/FNINF.2013.00046}, timestamp = {Thu, 28 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/fini/GrauerRHBSO13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/neuroimage/FarzinfarOSVDGEPPVGGDMPES13, author = {Mahshid Farzinfar and Ipek Oguz and Rachel Gimpel Smith and Audrey R. Verde and Cheryl Dietrich and Aditya Gupta and Maria L. Escolar and Joseph Piven and Sonia Pujol and Clement Vachet and Sylvain Gouttard and Guido Gerig and Stephen Dager and Robert C. McKinstry and Sarah Paterson and Alan C. Evans and Martin Andreas Styner}, title = {Diffusion imaging quality control via entropy of principal direction distribution}, journal = {NeuroImage}, volume = {82}, pages = {1--12}, year = {2013}, url = {https://doi.org/10.1016/j.neuroimage.2013.05.022}, doi = {10.1016/J.NEUROIMAGE.2013.05.022}, timestamp = {Fri, 09 Apr 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/neuroimage/FarzinfarOSVDGEPPVGGDMPES13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/LeeLOS13, author = {Joohwi Lee and Ilwoo Lyu and Ipek Oguz and Martin Andreas Styner}, editor = {Kensaku Mori and Ichiro Sakuma and Yoshinobu Sato and Christian Barillot and Nassir Navab}, title = {Particle-Guided Image Registration}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2013 - 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part {III}}, series = {Lecture Notes in Computer Science}, volume = {8151}, pages = {203--210}, publisher = {Springer}, year = {2013}, url = {https://doi.org/10.1007/978-3-642-40760-4\_26}, doi = {10.1007/978-3-642-40760-4\_26}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/LeeLOS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/FarzinfarLVOGS13, author = {Mahshid Farzinfar and Yin Li and Audrey R. Verde and Ipek Oguz and Guido Gerig and Martin A. Styner}, editor = {S{\'{e}}bastien Ourselin and David R. Haynor}, title = {{DTI} quality control assessment via error estimation from Monte Carlo simulations}, booktitle = {Medical Imaging 2013: Image Processing, Lake Buena Vista (Orlando Area), Florida, USA, February 10-12, 2013}, series = {{SPIE} Proceedings}, volume = {8669}, pages = {86692C}, publisher = {{SPIE}}, year = {2013}, url = {https://doi.org/10.1117/12.2006925}, doi = {10.1117/12.2006925}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miip/FarzinfarLVOGS13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/PaniaguaACSO11, author = {Beatriz Paniagua and Abeer Alhadidi and Lucia H. S. Cevidanes and Martin Styner and Ipek Oguz}, title = {Mandibular asymmetry characterization using generalized tensor-based morphometry}, booktitle = {Proceedings of the 8th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2011, March 30 - April 2, 2011, Chicago, Illinois, {USA}}, pages = {1175--1178}, publisher = {{IEEE}}, year = {2011}, url = {https://doi.org/10.1109/ISBI.2011.5872611}, doi = {10.1109/ISBI.2011.5872611}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/PaniaguaACSO11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/BoucharinOVSSS11, author = {Alexis Boucharin and Ipek Oguz and Clement Vachet and Yundi Shi and Mar Sanchez and Martin Styner}, editor = {Benoit M. Dawant and David R. Haynor}, title = {Efficient, graph-based white matter connectivity from orientation distribution functions via multi-directional graph propagation}, booktitle = {Medical Imaging 2011: Image Processing, Lake Buena Vista, Florida, USA, February 14-16, 2011}, series = {{SPIE} Proceedings}, volume = {7962}, pages = {79620S}, publisher = {{SPIE}}, year = {2011}, url = {https://doi.org/10.1117/12.878291}, doi = {10.1117/12.878291}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miip/BoucharinOVSSS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/OguzLBRMECJS11, author = {Ipek Oguz and Joohwi Lee and Fran{\c{c}}ois Budin and Ashley Rumple and Matthew McMurray and Cindy Ehlers and Fulton Crews and Josephine Johns and Martin Styner}, editor = {Benoit M. Dawant and David R. Haynor}, title = {Automatic skull-stripping of rat {MRI/DTI} scans and atlas building}, booktitle = {Medical Imaging 2011: Image Processing, Lake Buena Vista, Florida, USA, February 14-16, 2011}, series = {{SPIE} Proceedings}, volume = {7962}, pages = {796225}, publisher = {{SPIE}}, year = {2011}, url = {https://doi.org/10.1117/12.878405}, doi = {10.1117/12.878405}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miip/OguzLBRMECJS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/VachetHNOCWPS11, author = {Clement Vachet and Heather Cody Hazlett and Marc Niethammer and Ipek Oguz and Joshua E. Cates and Ross T. Whitaker and Joseph Piven and Martin Styner}, editor = {Benoit M. Dawant and David R. Haynor}, title = {Group-wise automatic mesh-based analysis of cortical thickness}, booktitle = {Medical Imaging 2011: Image Processing, Lake Buena Vista, Florida, USA, February 14-16, 2011}, series = {{SPIE} Proceedings}, volume = {7962}, pages = {796227}, publisher = {{SPIE}}, year = {2011}, url = {https://doi.org/10.1117/12.878300}, doi = {10.1117/12.878300}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miip/VachetHNOCWPS11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/LeeECNBPSJSO11, author = {Joohwi Lee and Cindy Ehlers and Fulton Crews and Marc Niethammer and Fran{\c{c}}ois Budin and Beatriz Paniagua and Kathy Sulik and Josephine Johns and Martin Styner and Ipek Oguz}, editor = {Benoit M. Dawant and David R. Haynor}, title = {Automatic cortical thickness analysis on rodent brain}, booktitle = {Medical Imaging 2011: Image Processing, Lake Buena Vista, Florida, USA, February 14-16, 2011}, series = {{SPIE} Proceedings}, volume = {7962}, pages = {796248}, publisher = {{SPIE}}, year = {2011}, url = {https://doi.org/10.1117/12.878305}, doi = {10.1117/12.878305}, timestamp = {Sat, 19 Oct 2019 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miip/LeeECNBPSJSO11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miigp/LiuOPM10, author = {Xiaoxiao Liu and Ipek Oguz and Stephen M. Pizer and Gig S. Mageras}, editor = {Kenneth H. Wong and Michael I. Miga}, title = {Shape-correlated deformation statistics for respiratory motion prediction in 4D lung}, booktitle = {Medical Imaging 2010: Visualization, Image-Guided Procedures, and Modeling, San Diego, California, United States, 13-18 February 2010}, series = {{SPIE} Proceedings}, volume = {7625}, pages = {76252D}, publisher = {{SPIE}}, year = {2010}, url = {https://doi.org/10.1117/12.843974}, doi = {10.1117/12.843974}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miigp/LiuOPM10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ipmi/OguzNCWFVS09, author = {Ipek Oguz and Marc Niethammer and Joshua E. Cates and Ross T. Whitaker and P. Thomas Fletcher and Clement Vachet and Martin Styner}, editor = {Jerry L. Prince and Dzung L. Pham and Kyle J. Myers}, title = {Cortical Correspondence with Probabilistic Fiber Connectivity}, booktitle = {Information Processing in Medical Imaging, 21st International Conference, {IPMI} 2009, Williamsburg, VA, USA, July 5-10, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5636}, pages = {651--663}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-02498-6\_54}, doi = {10.1007/978-3-642-02498-6\_54}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/ipmi/OguzNCWFVS09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/StynerOHG08, author = {Martin Styner and Ipek Oguz and Tobias Heimann and Guido Gerig}, title = {Minimum description length with local geometry}, booktitle = {Proceedings of the 2008 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, May 14-17, 2008}, pages = {1283--1286}, publisher = {{IEEE}}, year = {2008}, url = {https://doi.org/10.1109/ISBI.2008.4541238}, doi = {10.1109/ISBI.2008.4541238}, timestamp = {Wed, 04 Oct 2023 17:01:25 +0200}, biburl = {https://dblp.org/rec/conf/isbi/StynerOHG08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/isbi/OguzCFWCAS08, author = {Ipek Oguz and Joshua E. Cates and P. Thomas Fletcher and Ross T. Whitaker and Derek Cool and Stephen R. Aylward and Martin Andreas Styner}, title = {Cortical correspondence using entropy-based particle systems and local features}, booktitle = {Proceedings of the 2008 {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, May 14-17, 2008}, pages = {1637--1640}, publisher = {{IEEE}}, year = {2008}, url = {https://doi.org/10.1109/ISBI.2008.4541327}, doi = {10.1109/ISBI.2008.4541327}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/isbi/OguzCFWCAS08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/cvgip/WendtBOL07, author = {Jeremy D. Wendt and William V. Baxter III and Ipek Oguz and Ming C. Lin}, title = {Finite volume flow simulations on arbitrary domains}, journal = {Graph. Model.}, volume = {69}, number = {1}, pages = {19--32}, year = {2007}, url = {https://doi.org/10.1016/j.gmod.2006.05.004}, doi = {10.1016/J.GMOD.2006.05.004}, timestamp = {Fri, 21 Feb 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/cvgip/WendtBOL07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miip/StynerOXPG07, author = {Martin Styner and Ipek Oguz and Shun Xu and Dimitrios Pantazis and Guido Gerig}, editor = {Josien P. W. Pluim and Joseph M. Reinhardt}, title = {Statistical group differences in anatomical shape analysis using Hotelling {T2} metric}, booktitle = {Medical Imaging 2007: Image Processing, San Diego, CA, United States, 17-22 February 2007}, series = {{SPIE} Proceedings}, volume = {6512}, pages = {65123Z}, publisher = {{SPIE}}, year = {2007}, url = {https://doi.org/10.1117/12.708467}, doi = {10.1117/12.708467}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/miip/StynerOXPG07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/miccai/StynerOSCJ05, author = {Martin Andreas Styner and Ipek Oguz and Rachel Gimpel Smith and Carissa Cascio and Matthieu Jomier}, editor = {James S. Duncan and Guido Gerig}, title = {Corpus Callosum Subdivision Based on a Probabilistic Model of Inter-hemispheric Connectivity}, booktitle = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2005, 8th International Conference, Palm Springs, CA, USA, October 26-29, 2005, Proceedings, Part {II}}, series = {Lecture Notes in Computer Science}, volume = {3750}, pages = {765--772}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11566489\_94}, doi = {10.1007/11566489\_94}, timestamp = {Sat, 30 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/miccai/StynerOSCJ05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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