BibTeX records: Ipek Oguz

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@article{DBLP:journals/cbm/LiuBEMTWOLL23,
  author       = {Yue Liu and
                  Shunxing Bao and
                  Dario J. Englot and
                  Victoria L. Morgan and
                  Warren D. Taylor and
                  Ying Wei and
                  Ipek Oguz and
                  Bennett A. Landman and
                  Ilwoo Lyu},
  title        = {Hierarchical particle optimization for cortical shape correspondence
                  in temporal lobe resection},
  journal      = {Comput. Biol. Medicine},
  volume       = {152},
  pages        = {106414},
  year         = {2023},
  url          = {https://doi.org/10.1016/j.compbiomed.2022.106414},
  doi          = {10.1016/J.COMPBIOMED.2022.106414},
  timestamp    = {Wed, 01 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/cbm/LiuBEMTWOLL23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/DorentKIBRJGCMB23,
  author       = {Reuben Dorent and
                  Aaron Kujawa and
                  Marina Ivory and
                  Spyridon Bakas and
                  Nicola Rieke and
                  Samuel Joutard and
                  Ben Glocker and
                  M. Jorge Cardoso and
                  Marc Modat and
                  Kayhan Batmanghelich and
                  Arseniy Belkov and
                  Maria G. Baldeon Calisto and
                  Jae Won Choi and
                  Benoit M. Dawant and
                  Hexin Dong and
                  Sergio Escalera and
                  Yubo Fan and
                  Lasse Hansen and
                  Mattias P. Heinrich and
                  Smriti Joshi and
                  Victoriya Kashtanova and
                  Hyeongyu Kim and
                  Satoshi Kondo and
                  Christian N. Kruse and
                  Susana K. Lai{-}Yuen and
                  Hao Li and
                  Han Liu and
                  Buntheng Ly and
                  Ipek Oguz and
                  Hyungseob Shin and
                  Boris Shirokikh and
                  Zixian Su and
                  Guotai Wang and
                  Jianghao Wu and
                  Yanwu Xu and
                  Kai Yao and
                  Li Zhang and
                  S{\'{e}}bastien Ourselin and
                  Jonathan Shapey and
                  Tom Vercauteren},
  title        = {CrossMoDA 2021 challenge: Benchmark of cross-modality domain adaptation
                  techniques for vestibular schwannoma and cochlea segmentation},
  journal      = {Medical Image Anal.},
  volume       = {83},
  pages        = {102628},
  year         = {2023},
  url          = {https://doi.org/10.1016/j.media.2022.102628},
  doi          = {10.1016/J.MEDIA.2022.102628},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/DorentKIBRJGCMB23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/LiuLYFHDNXO23,
  author       = {Han Liu and
                  Hao Li and
                  Xing Yao and
                  Yubo Fan and
                  Dewei Hu and
                  Benoit M. Dawant and
                  Vishwesh Nath and
                  Zhoubing Xu and
                  Ipek Oguz},
  editor       = {Hayit Greenspan and
                  Anant Madabhushi and
                  Parvin Mousavi and
                  Septimiu Salcudean and
                  James Duncan and
                  Tanveer F. Syeda{-}Mahmood and
                  Russell H. Taylor},
  title        = {COLosSAL: {A} Benchmark for Cold-Start Active Learning for 3D Medical
                  Image Segmentation},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2023 - 26th International Conference, Vancouver, BC, Canada, October
                  8-12, 2023, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {14221},
  pages        = {25--34},
  publisher    = {Springer},
  year         = {2023},
  url          = {https://doi.org/10.1007/978-3-031-43895-0\_3},
  doi          = {10.1007/978-3-031-43895-0\_3},
  timestamp    = {Thu, 05 Oct 2023 18:00:35 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/LiuLYFHDNXO23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/HuLLYWO23,
  author       = {Dewei Hu and
                  Hao Li and
                  Han Liu and
                  Xing Yao and
                  Jiacheng Wang and
                  Ipek Oguz},
  editor       = {M. Emre Celebi and
                  Md Sirajus Salekin and
                  Hyunwoo J. Kim and
                  Shadi Albarqouni and
                  Catarina Barata and
                  Allan Halpern and
                  Philipp Tschandl and
                  Marc Combalia and
                  Yuan Liu and
                  Ghada Zamzmi and
                  Joshua Levy and
                  Huzefa Rangwala and
                  Annika Reinke and
                  Diya Wynn and
                  Bennett A. Landman and
                  Won{-}Ki Jeong and
                  Yiqing Shen and
                  Zhongying Deng and
                  Spyridon Bakas and
                  Xiaoxiao Li and
                  Chen Qin and
                  Nicola Rieke and
                  Holger Roth and
                  Daguang Xu},
  title        = {{MAP:} Domain Generalization via Meta-Learning on Anatomy-Consistent
                  Pseudo-Modalities},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2023 Workshops - {ISIC} 2023, Care-AI 2023, MedAGI 2023, DeCaF 2023,
                  Held in Conjunction with {MICCAI} 2023, Vancouver, BC, Canada, October
                  8-12, 2023, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {14393},
  pages        = {182--192},
  publisher    = {Springer},
  year         = {2023},
  url          = {https://doi.org/10.1007/978-3-031-47401-9\_18},
  doi          = {10.1007/978-3-031-47401-9\_18},
  timestamp    = {Tue, 19 Dec 2023 16:57:58 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/HuLLYWO23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midl/0007LO23,
  author       = {Jiacheng Wang and
                  Kathleen E. Larson and
                  Ipek Oguz},
  editor       = {Ipek Oguz and
                  Jack H. Noble and
                  Xiaoxiao Li and
                  Martin Styner and
                  Christian Baumgartner and
                  Mirabela Rusu and
                  Tobias Heimann and
                  Despina Kontos and
                  Bennett A. Landman and
                  Benoit M. Dawant},
  title        = {Self-Supervised {CSF} Inpainting for Improved Accuracy Validation
                  of Cortical Surface Analyses},
  booktitle    = {Medical Imaging with Deep Learning, {MIDL} 2023, 10-12 July 2023,
                  Nashville, TN, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {227},
  pages        = {170--189},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {https://proceedings.mlr.press/v227/wang24a.html},
  timestamp    = {Tue, 20 Feb 2024 17:19:52 +0100},
  biburl       = {https://dblp.org/rec/conf/midl/0007LO23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/0007LLHLYBBO23,
  author       = {Jiacheng Wang and
                  Hao Li and
                  Han Liu and
                  Dewei Hu and
                  Daiwei Lu and
                  Keejin Yoon and
                  Kelsey Barter and
                  Francesca Bagnato and
                  Ipek Oguz},
  editor       = {Olivier Colliot and
                  Ivana Isgum},
  title        = {{SSL2:} self-supervised learning meets semi-supervised learning: multiple
                  sclerosis segmentation in 7T-MRI from large-scale 3T-MRI},
  booktitle    = {Medical Imaging 2023: Image Processing, San Diego, CA, USA, February
                  19-23, 2023},
  series       = {{SPIE} Proceedings},
  volume       = {12464},
  publisher    = {{SPIE}},
  year         = {2023},
  url          = {https://doi.org/10.1117/12.2654522},
  doi          = {10.1117/12.2654522},
  timestamp    = {Mon, 18 Mar 2024 16:27:18 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/0007LLHLYBBO23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/HuY0TO23,
  author       = {Dewei Hu and
                  Xing Yao and
                  Jiacheng Wang and
                  Yuankai K. Tao and
                  Ipek Oguz},
  editor       = {Olivier Colliot and
                  Ivana Isgum},
  title        = {Deep angiogram: trivializing retinal vessel segmentation},
  booktitle    = {Medical Imaging 2023: Image Processing, San Diego, CA, USA, February
                  19-23, 2023},
  series       = {{SPIE} Proceedings},
  volume       = {12464},
  publisher    = {{SPIE}},
  year         = {2023},
  url          = {https://doi.org/10.1117/12.2654214},
  doi          = {10.1117/12.2654214},
  timestamp    = {Mon, 18 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/HuY0TO23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/YaoLLHLL0SJLPO23,
  author       = {Xing Yao and
                  Ange Lou and
                  Hao Li and
                  Dewei Hu and
                  Daiwei Lu and
                  Han Liu and
                  Jiacheng Wang and
                  Zachary A. Stoebner and
                  Hans J. Johnson and
                  Jeffrey D. Long and
                  Jane S. Paulsen and
                  Ipek Oguz},
  editor       = {Olivier Colliot and
                  Ivana Isgum},
  title        = {Novel application of the attention mechanism on medical image harmonization},
  booktitle    = {Medical Imaging 2023: Image Processing, San Diego, CA, USA, February
                  19-23, 2023},
  series       = {{SPIE} Proceedings},
  volume       = {12464},
  publisher    = {{SPIE}},
  year         = {2023},
  url          = {https://doi.org/10.1117/12.2654392},
  doi          = {10.1117/12.2654392},
  timestamp    = {Thu, 21 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/YaoLLHLL0SJLPO23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/ZhangLLHO23,
  author       = {Huahong Zhang and
                  Hao Li and
                  Kathleen E. Larson and
                  Kilian Hett and
                  Ipek Oguz},
  editor       = {Olivier Colliot and
                  Ivana Isgum},
  title        = {Domain generalization for robust {MS} lesion segmentation},
  booktitle    = {Medical Imaging 2023: Image Processing, San Diego, CA, USA, February
                  19-23, 2023},
  series       = {{SPIE} Proceedings},
  volume       = {12464},
  publisher    = {{SPIE}},
  year         = {2023},
  url          = {https://doi.org/10.1117/12.2654373},
  doi          = {10.1117/12.2654373},
  timestamp    = {Thu, 21 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/ZhangLLHO23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/midl/2023,
  editor       = {Ipek Oguz and
                  Jack H. Noble and
                  Xiaoxiao Li and
                  Martin Styner and
                  Christian Baumgartner and
                  Mirabela Rusu and
                  Tobias Heimann and
                  Despina Kontos and
                  Bennett A. Landman and
                  Benoit M. Dawant},
  title        = {Medical Imaging with Deep Learning, {MIDL} 2023, 10-12 July 2023,
                  Nashville, TN, {USA}},
  series       = {Proceedings of Machine Learning Research},
  volume       = {227},
  publisher    = {{PMLR}},
  year         = {2023},
  url          = {http://proceedings.mlr.press/v227/},
  timestamp    = {Tue, 20 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/midl/2023.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2303-05026,
  author       = {Jiacheng Wang and
                  Hao Li and
                  Han Liu and
                  Dewei Hu and
                  Daiwei Lu and
                  Keejin Yoon and
                  Kelsey Barter and
                  Francesca Bagnato and
                  Ipek Oguz},
  title        = {SSL{\^{}}2: Self-Supervised Learning meets Semi-Supervised Learning:
                  Multiple Sclerosis Segmentation in 7T-MRI from large-scale 3T-MRI},
  journal      = {CoRR},
  volume       = {abs/2303.05026},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2303.05026},
  doi          = {10.48550/ARXIV.2303.05026},
  eprinttype    = {arXiv},
  eprint       = {2303.05026},
  timestamp    = {Tue, 26 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2303-05026.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2303-05777,
  author       = {Jiacheng Wang and
                  Kathleen E. Larson and
                  Ipek Oguz},
  title        = {Self-Supervised {CSF} Inpainting with Synthetic Atrophy for Improved
                  Accuracy Validation of Cortical Surface Analyses},
  journal      = {CoRR},
  volume       = {abs/2303.05777},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2303.05777},
  doi          = {10.48550/ARXIV.2303.05777},
  eprinttype    = {arXiv},
  eprint       = {2303.05777},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2303-05777.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2304-14030,
  author       = {Han Liu and
                  Zhoubing Xu and
                  Riqiang Gao and
                  Hao Li and
                  Jianing Wang and
                  Guillaume Chabin and
                  Ipek Oguz and
                  Sasa Grbic},
  title        = {{COSST:} Multi-organ Segmentation with Partially Labeled Datasets
                  Using Comprehensive Supervisions and Self-training},
  journal      = {CoRR},
  volume       = {abs/2304.14030},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2304.14030},
  doi          = {10.48550/ARXIV.2304.14030},
  eprinttype    = {arXiv},
  eprint       = {2304.14030},
  timestamp    = {Wed, 03 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2304-14030.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2307-00240,
  author       = {Dewei Hu and
                  Hao Li and
                  Han Liu and
                  Xing Yao and
                  Jiacheng Wang and
                  Ipek Oguz},
  title        = {VesselMorph: Domain-Generalized Retinal Vessel Segmentation via Shape-Aware
                  Representation},
  journal      = {CoRR},
  volume       = {abs/2307.00240},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2307.00240},
  doi          = {10.48550/ARXIV.2307.00240},
  eprinttype    = {arXiv},
  eprint       = {2307.00240},
  timestamp    = {Tue, 26 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2307-00240.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2307-00245,
  author       = {Dewei Hu and
                  Xing Yao and
                  Jiacheng Wang and
                  Yuankai K. Tao and
                  Ipek Oguz},
  title        = {Deep Angiogram: Trivializing Retinal Vessel Segmentation},
  journal      = {CoRR},
  volume       = {abs/2307.00245},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2307.00245},
  doi          = {10.48550/ARXIV.2307.00245},
  eprinttype    = {arXiv},
  eprint       = {2307.00245},
  timestamp    = {Tue, 26 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2307-00245.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2307-12004,
  author       = {Han Liu and
                  Hao Li and
                  Xing Yao and
                  Yubo Fan and
                  Dewei Hu and
                  Benoit M. Dawant and
                  Vishwesh Nath and
                  Zhoubing Xu and
                  Ipek Oguz},
  title        = {COLosSAL: {A} Benchmark for Cold-start Active Learning for 3D Medical
                  Image Segmentation},
  journal      = {CoRR},
  volume       = {abs/2307.12004},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2307.12004},
  doi          = {10.48550/ARXIV.2307.12004},
  eprinttype    = {arXiv},
  eprint       = {2307.12004},
  timestamp    = {Tue, 01 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2307-12004.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2308-06377,
  author       = {Hao Li and
                  Han Liu and
                  Dewei Hu and
                  Xing Yao and
                  Jiacheng Wang and
                  Ipek Oguz},
  title        = {{CATS} v2: Hybrid encoders for robust medical segmentation},
  journal      = {CoRR},
  volume       = {abs/2308.06377},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2308.06377},
  doi          = {10.48550/ARXIV.2308.06377},
  eprinttype    = {arXiv},
  eprint       = {2308.06377},
  timestamp    = {Tue, 26 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2308-06377.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2308-10382,
  author       = {Xing Yao and
                  Han Liu and
                  Dewei Hu and
                  Daiwei Lu and
                  Ange Lou and
                  Hao Li and
                  Ruining Deng and
                  Gabriel Arenas and
                  Baris U. Oguz and
                  Nadav Schwartz and
                  Brett C. Byram and
                  Ipek Oguz},
  title        = {False Negative/Positive Control for {SAM} on Noisy Medical Images},
  journal      = {CoRR},
  volume       = {abs/2308.10382},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2308.10382},
  doi          = {10.48550/ARXIV.2308.10382},
  eprinttype    = {arXiv},
  eprint       = {2308.10382},
  timestamp    = {Wed, 30 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2308-10382.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2309-01286,
  author       = {Dewei Hu and
                  Hao Li and
                  Han Liu and
                  Xing Yao and
                  Jiacheng Wang and
                  Ipek Oguz},
  title        = {{MAP:} Domain Generalization via Meta-Learning on Anatomy-Consistent
                  Pseudo-Modalities},
  journal      = {CoRR},
  volume       = {abs/2309.01286},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2309.01286},
  doi          = {10.48550/ARXIV.2309.01286},
  eprinttype    = {arXiv},
  eprint       = {2309.01286},
  timestamp    = {Tue, 26 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2309-01286.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2310-19721,
  author       = {Hao Li and
                  Han Liu and
                  Dewei Hu and
                  Jiacheng Wang and
                  Ipek Oguz},
  title        = {Promise: Prompt-driven 3D Medical Image Segmentation Using Pretrained
                  Image Foundation Models},
  journal      = {CoRR},
  volume       = {abs/2310.19721},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2310.19721},
  doi          = {10.48550/ARXIV.2310.19721},
  eprinttype    = {arXiv},
  eprint       = {2310.19721},
  timestamp    = {Fri, 03 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2310-19721.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2311-07806,
  author       = {Hao Li and
                  Han Liu and
                  Dewei Hu and
                  Jiacheng Wang and
                  Ipek Oguz},
  title        = {Assessing Test-time Variability for Interactive 3D Medical Image Segmentation
                  with Diverse Point Prompts},
  journal      = {CoRR},
  volume       = {abs/2311.07806},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2311.07806},
  doi          = {10.48550/ARXIV.2311.07806},
  eprinttype    = {arXiv},
  eprint       = {2311.07806},
  timestamp    = {Wed, 22 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2311-07806.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2311-12437,
  author       = {Han Liu and
                  Yubo Fan and
                  Zhoubing Xu and
                  Benoit M. Dawant and
                  Ipek Oguz},
  title        = {Learning Site-specific Styles for Multi-institutional Unsupervised
                  Cross-modality Domain Adaptation},
  journal      = {CoRR},
  volume       = {abs/2311.12437},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2311.12437},
  doi          = {10.48550/ARXIV.2311.12437},
  eprinttype    = {arXiv},
  eprint       = {2311.12437},
  timestamp    = {Wed, 29 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2311-12437.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2311-13052,
  author       = {Jiacheng Wang and
                  Hao Li and
                  Dewei Hu and
                  Yuankai K. Tao and
                  Ipek Oguz},
  title        = {Novel {OCT} mosaicking pipeline with Feature- and Pixel-based registration},
  journal      = {CoRR},
  volume       = {abs/2311.13052},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2311.13052},
  doi          = {10.48550/ARXIV.2311.13052},
  eprinttype    = {arXiv},
  eprint       = {2311.13052},
  timestamp    = {Thu, 30 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2311-13052.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/brainles-ws/LiuFOD22,
  author       = {Han Liu and
                  Yubo Fan and
                  Ipek Oguz and
                  Benoit M. Dawant},
  editor       = {Spyridon Bakas and
                  Alessandro Crimi and
                  Ujjwal Baid and
                  Sylwia Malec and
                  Monika Pytlarz and
                  Bhakti Baheti and
                  Maximilian Zenk and
                  Reuben Dorent},
  title        = {Enhancing Data Diversity for Self-training Based Unsupervised Cross-Modality
                  Vestibular Schwannoma and Cochlea Segmentation},
  booktitle    = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain
                  Injuries - 8th International Workshop, BrainLes 2022, Held in Conjunction
                  with {MICCAI} 2022, Singapore, September 18, 2022, Revised Selected
                  Papers, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {14092},
  pages        = {109--118},
  publisher    = {Springer},
  year         = {2022},
  url          = {https://doi.org/10.1007/978-3-031-44153-0\_11},
  doi          = {10.1007/978-3-031-44153-0\_11},
  timestamp    = {Thu, 22 Feb 2024 20:44:54 +0100},
  biburl       = {https://dblp.org/rec/conf/brainles-ws/LiuFOD22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/LiHLWO22,
  author       = {Hao Li and
                  Dewei Hu and
                  Han Liu and
                  Jiacheng Wang and
                  Ipek Oguz},
  title        = {Cats: Complementary {CNN} and Transformer Encoders for Segmentation},
  booktitle    = {19th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2022, Kolkata, India, March 28-31, 2022},
  pages        = {1--5},
  publisher    = {{IEEE}},
  year         = {2022},
  url          = {https://doi.org/10.1109/ISBI52829.2022.9761596},
  doi          = {10.1109/ISBI52829.2022.9761596},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/LiHLWO22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mibam/ZhuLCLTO22,
  author       = {Qibang Zhu and
                  Hao Li and
                  Nathan D. Cass and
                  Nathan R. Lindquist and
                  Kareem O. Tawfik and
                  Ipek Oguz},
  editor       = {Barjor S. Gimi and
                  Andrzej Kr{\'{o}}l},
  title        = {Acoustic neuroma segmentation using ensembled convolutional neural
                  networks},
  booktitle    = {Medical Imaging 2022: Biomedical Applications in Molecular, Structural,
                  and Functional Imaging, San Diego, CA, USA, February 20-24, 2022 /
                  Online, March 21-27, 2022},
  series       = {{SPIE} Proceedings},
  volume       = {12036},
  publisher    = {{SPIE}},
  year         = {2022},
  url          = {https://doi.org/10.1117/12.2613402},
  doi          = {10.1117/12.2613402},
  timestamp    = {Thu, 07 Mar 2024 15:34:21 +0100},
  biburl       = {https://dblp.org/rec/conf/mibam/ZhuLCLTO22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/LiLHWJSGDVLPO22,
  author       = {Hao Li and
                  Han Liu and
                  Dewei Hu and
                  Jiacheng Wang and
                  Hans J. Johnson and
                  Omar Sherbini and
                  Francesco Gavazzi and
                  Russell D'Aiello and
                  Adeline Vanderver and
                  Jeffrey D. Long and
                  Jane S. Paulsen and
                  Ipek Oguz},
  editor       = {Ahmed Abdulkadir and
                  Deepti R. Bathula and
                  Nicha C. Dvornek and
                  Mohamad Habes and
                  Seyed Mostafa Kia and
                  Vinod Kumar and
                  Thomas Wolfers},
  title        = {Self-supervised Test-Time Adaptation for Medical Image Segmentation},
  booktitle    = {Machine Learning in Clinical Neuroimaging - 5th International Workshop,
                  {MLCN} 2022, Held in Conjunction with {MICCAI} 2022, Singapore, September
                  18, 2022, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {13596},
  pages        = {32--41},
  publisher    = {Springer},
  year         = {2022},
  url          = {https://doi.org/10.1007/978-3-031-17899-3\_4},
  doi          = {10.1007/978-3-031-17899-3\_4},
  timestamp    = {Tue, 10 Oct 2023 14:59:33 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/LiLHWJSGDVLPO22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/LiuFLWHCLZO22,
  author       = {Han Liu and
                  Yubo Fan and
                  Hao Li and
                  Jiacheng Wang and
                  Dewei Hu and
                  Can Cui and
                  Ho Hin Lee and
                  Huahong Zhang and
                  Ipek Oguz},
  editor       = {Linwei Wang and
                  Qi Dou and
                  P. Thomas Fletcher and
                  Stefanie Speidel and
                  Shuo Li},
  title        = {ModDrop++: {A} Dynamic Filter Network with Intra-subject Co-training
                  for Multiple Sclerosis Lesion Segmentation with Missing Modalities},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2022 - 25th International Conference, Singapore, September 18-22,
                  2022, Proceedings, Part {V}},
  series       = {Lecture Notes in Computer Science},
  volume       = {13435},
  pages        = {444--453},
  publisher    = {Springer},
  year         = {2022},
  url          = {https://doi.org/10.1007/978-3-031-16443-9\_43},
  doi          = {10.1007/978-3-031-16443-9\_43},
  timestamp    = {Tue, 26 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/LiuFLWHCLZO22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midl/HuLLO22,
  author       = {Dewei Hu and
                  Hao Li and
                  Han Liu and
                  Ipek Oguz},
  editor       = {Ender Konukoglu and
                  Bjoern H. Menze and
                  Archana Venkataraman and
                  Christian F. Baumgartner and
                  Qi Dou and
                  Shadi Albarqouni},
  title        = {Domain Generalization for Retinal Vessel Segmentation with Vector
                  Field Transformer},
  booktitle    = {International Conference on Medical Imaging with Deep Learning, {MIDL}
                  2022, 6-8 July 2022, Zurich, Switzerland},
  series       = {Proceedings of Machine Learning Research},
  volume       = {172},
  pages        = {552--564},
  publisher    = {{PMLR}},
  year         = {2022},
  url          = {https://proceedings.mlr.press/v172/hu22a.html},
  timestamp    = {Fri, 17 Feb 2023 16:29:10 +0100},
  biburl       = {https://dblp.org/rec/conf/midl/HuLLO22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/HuTO22,
  author       = {Dewei Hu and
                  Yuankai K. Tao and
                  Ipek Oguz},
  editor       = {Olivier Colliot and
                  Ivana Isgum and
                  Bennett A. Landman and
                  Murray H. Loew},
  title        = {Unsupervised denoising of retinal {OCT} with diffusion probabilistic
                  model},
  booktitle    = {Medical Imaging 2022: Image Processing, San Diego, CA, USA, February
                  20-24, 2022 / Online, March 21-27, 2022},
  series       = {{SPIE} Proceedings},
  volume       = {12032},
  publisher    = {{SPIE}},
  year         = {2022},
  url          = {https://doi.org/10.1117/12.2612235},
  doi          = {10.1117/12.2612235},
  timestamp    = {Thu, 14 Mar 2024 14:38:36 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/HuTO22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/LiZHGJSGDVLPO22,
  author       = {Hao Li and
                  Qibang Zhu and
                  Dewei Hu and
                  Manasvi R. Gunnala and
                  Hans J. Johnson and
                  Omar Sherbini and
                  Francesco Gavazzi and
                  Russell D'Aiello and
                  Adeline Vanderver and
                  Jeffrey D. Long and
                  Jane S. Paulsen and
                  Ipek Oguz},
  editor       = {Olivier Colliot and
                  Ivana Isgum and
                  Bennett A. Landman and
                  Murray H. Loew},
  title        = {Human brain extraction with deep learning},
  booktitle    = {Medical Imaging 2022: Image Processing, San Diego, CA, USA, February
                  20-24, 2022 / Online, March 21-27, 2022},
  series       = {{SPIE} Proceedings},
  volume       = {12032},
  publisher    = {{SPIE}},
  year         = {2022},
  url          = {https://doi.org/10.1117/12.2613277},
  doi          = {10.1117/12.2613277},
  timestamp    = {Thu, 21 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/LiZHGJSGDVLPO22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/StoebnerLHKO22,
  author       = {Zachary A. Stoebner and
                  Daiwei Lu and
                  Seok Hee Hong and
                  Nicholas L. Kavoussi and
                  Ipek Oguz},
  editor       = {Olivier Colliot and
                  Ivana Isgum and
                  Bennett A. Landman and
                  Murray H. Loew},
  title        = {Segmentation of kidney stones in endoscopic video feeds},
  booktitle    = {Medical Imaging 2022: Image Processing, San Diego, CA, USA, February
                  20-24, 2022 / Online, March 21-27, 2022},
  series       = {{SPIE} Proceedings},
  volume       = {12032},
  publisher    = {{SPIE}},
  year         = {2022},
  url          = {https://doi.org/10.1117/12.2613274},
  doi          = {10.1117/12.2613274},
  timestamp    = {Thu, 14 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/StoebnerLHKO22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2201-02831,
  author       = {Reuben Dorent and
                  Aaron Kujawa and
                  Marina Ivory and
                  Spyridon Bakas and
                  Nicola Rieke and
                  Samuel Joutard and
                  Ben Glocker and
                  Jorge Cardoso and
                  Marc Modat and
                  Kayhan Batmanghelich and
                  Arseniy Belkov and
                  Maria G. Baldeon Calisto and
                  Jae Won Choi and
                  Benoit M. Dawant and
                  Hexin Dong and
                  Sergio Escalera and
                  Yubo Fan and
                  Lasse Hansen and
                  Mattias P. Heinrich and
                  Smriti Joshi and
                  Victoriya Kashtanova and
                  Hyeongyu Kim and
                  Satoshi Kondo and
                  Christian N. Kruse and
                  Susana K. Lai{-}Yuen and
                  Hao Li and
                  Han Liu and
                  Buntheng Ly and
                  Ipek Oguz and
                  Hyungseob Shin and
                  Boris Shirokikh and
                  Zixian Su and
                  Guotai Wang and
                  Jianghao Wu and
                  Yanwu Xu and
                  Kai Yao and
                  Li Zhang and
                  S{\'{e}}bastien Ourselin and
                  Jonathan Shapey and
                  Tom Vercauteren},
  title        = {CrossMoDA 2021 challenge: Benchmark of Cross-Modality Domain Adaptation
                  techniques for Vestibular Schwnannoma and Cochlea Segmentation},
  journal      = {CoRR},
  volume       = {abs/2201.02831},
  year         = {2022},
  url          = {https://arxiv.org/abs/2201.02831},
  eprinttype    = {arXiv},
  eprint       = {2201.02831},
  timestamp    = {Thu, 27 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2201-02831.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2201-11760,
  author       = {Dewei Hu and
                  Yuankai K. Tao and
                  Ipek Oguz},
  title        = {Unsupervised Denoising of Retinal {OCT} with Diffusion Probabilistic
                  Model},
  journal      = {CoRR},
  volume       = {abs/2201.11760},
  year         = {2022},
  url          = {https://arxiv.org/abs/2201.11760},
  eprinttype    = {arXiv},
  eprint       = {2201.11760},
  timestamp    = {Wed, 02 Feb 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2201-11760.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2203-04959,
  author       = {Han Liu and
                  Yubo Fan and
                  Hao Li and
                  Jiacheng Wang and
                  Dewei Hu and
                  Can Cui and
                  Ho Hin Lee and
                  Ipek Oguz},
  title        = {ModDrop++: {A} Dynamic Filter Network with Intra-subject Co-training
                  for Multiple Sclerosis Lesion Segmentation with Missing Modalities},
  journal      = {CoRR},
  volume       = {abs/2203.04959},
  year         = {2022},
  url          = {https://doi.org/10.48550/arXiv.2203.04959},
  doi          = {10.48550/ARXIV.2203.04959},
  eprinttype    = {arXiv},
  eprint       = {2203.04959},
  timestamp    = {Tue, 26 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2203-04959.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2204-14175,
  author       = {Zachary A. Stoebner and
                  Daiwei Lu and
                  Seok Hee Hong and
                  Nicholas L. Kavoussi and
                  Ipek Oguz},
  title        = {Segmentation of kidney stones in endoscopic video feeds},
  journal      = {CoRR},
  volume       = {abs/2204.14175},
  year         = {2022},
  url          = {https://doi.org/10.48550/arXiv.2204.14175},
  doi          = {10.48550/ARXIV.2204.14175},
  eprinttype    = {arXiv},
  eprint       = {2204.14175},
  timestamp    = {Mon, 02 May 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2204-14175.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2208-11572,
  author       = {Hao Li and
                  Dewei Hu and
                  Han Liu and
                  Jiacheng Wang and
                  Ipek Oguz},
  title        = {Cats: Complementary {CNN} and Transformer Encoders for Segmentation},
  journal      = {CoRR},
  volume       = {abs/2208.11572},
  year         = {2022},
  url          = {https://doi.org/10.48550/arXiv.2208.11572},
  doi          = {10.48550/ARXIV.2208.11572},
  eprinttype    = {arXiv},
  eprint       = {2208.11572},
  timestamp    = {Tue, 26 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2208-11572.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/HettTOMC21,
  author       = {Kilian Hett and
                  Vinh{-}Thong Ta and
                  Ipek Oguz and
                  Jos{\'{e}} V. Manj{\'{o}}n and
                  Pierrick Coup{\'{e}}},
  title        = {Multi-scale graph-based grading for Alzheimer's disease prediction},
  journal      = {Medical Image Anal.},
  volume       = {67},
  pages        = {101850},
  year         = {2021},
  url          = {https://doi.org/10.1016/j.media.2020.101850},
  doi          = {10.1016/J.MEDIA.2020.101850},
  timestamp    = {Fri, 25 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/mia/HettTOMC21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/brainles-ws/LiHZLZO21,
  author       = {Hao Li and
                  Dewei Hu and
                  Qibang Zhu and
                  Kathleen E. Larson and
                  Huahong Zhang and
                  Ipek Oguz},
  editor       = {Alessandro Crimi and
                  Spyridon Bakas},
  title        = {Unsupervised Cross-modality Domain Adaptation for Segmenting Vestibular
                  Schwannoma and Cochlea with Data Augmentation and Model Ensemble},
  booktitle    = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain
                  Injuries - 7th International Workshop, BrainLes 2021, Held in Conjunction
                  with {MICCAI} 2021, Virtual Event, September 27, 2021, Revised Selected
                  Papers, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {12963},
  pages        = {518--528},
  publisher    = {Springer},
  year         = {2021},
  url          = {https://doi.org/10.1007/978-3-031-09002-8\_45},
  doi          = {10.1007/978-3-031-09002-8\_45},
  timestamp    = {Mon, 06 Nov 2023 12:57:51 +0100},
  biburl       = {https://dblp.org/rec/conf/brainles-ws/LiHZLZO21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/HuCLLTO21,
  author       = {Dewei Hu and
                  Can Cui and
                  Hao Li and
                  Kathleen E. Larson and
                  Yuankai K. Tao and
                  Ipek Oguz},
  editor       = {Marleen de Bruijne and
                  Philippe C. Cattin and
                  St{\'{e}}phane Cotin and
                  Nicolas Padoy and
                  Stefanie Speidel and
                  Yefeng Zheng and
                  Caroline Essert},
  title        = {{LIFE:} {A} Generalizable Autodidactic Pipeline for 3D {OCT-A} Vessel
                  Segmentation},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2021 - 24th International Conference, Strasbourg, France, September
                  27 - October 1, 2021, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {12901},
  pages        = {514--524},
  publisher    = {Springer},
  year         = {2021},
  url          = {https://doi.org/10.1007/978-3-030-87193-2\_49},
  doi          = {10.1007/978-3-030-87193-2\_49},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/HuCLLTO21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/0003EMT0OLL21,
  author       = {Yue Liu and
                  Dario J. Englot and
                  Victoria L. Morgan and
                  Warren D. Taylor and
                  Ying Wei and
                  Ipek Oguz and
                  Bennett A. Landman and
                  Ilwoo Lyu},
  editor       = {Ivana Isgum and
                  Bennett A. Landman},
  title        = {Establishing surface correspondence for post-surgical cortical thickness
                  changes in temporal lobe epilepsy},
  booktitle    = {Medical Imaging 2021: Image Processing, Online, February 15-19, 2021},
  series       = {{SPIE} Proceedings},
  volume       = {11596},
  publisher    = {{SPIE}},
  year         = {2021},
  url          = {https://doi.org/10.1117/12.2580808},
  doi          = {10.1117/12.2580808},
  timestamp    = {Mon, 11 Mar 2024 15:57:50 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/0003EMT0OLL21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/LarsonO21,
  author       = {Kathleen E. Larson and
                  Ipek Oguz},
  editor       = {Ivana Isgum and
                  Bennett A. Landman},
  title        = {Synthetic atrophy for longitudinal surface-based cortical thickness
                  measurement},
  booktitle    = {Medical Imaging 2021: Image Processing, Online, February 15-19, 2021},
  series       = {{SPIE} Proceedings},
  volume       = {11596},
  publisher    = {{SPIE}},
  year         = {2021},
  url          = {https://doi.org/10.1117/12.2580907},
  doi          = {10.1117/12.2580907},
  timestamp    = {Thu, 21 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/LarsonO21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/LiZJLPO21,
  author       = {Hao Li and
                  Huahong Zhang and
                  Hans J. Johnson and
                  Jeffrey D. Long and
                  Jane S. Paulsen and
                  Ipek Oguz},
  editor       = {Ivana Isgum and
                  Bennett A. Landman},
  title        = {Longitudinal subcortical segmentation with deep learning},
  booktitle    = {Medical Imaging 2021: Image Processing, Online, February 15-19, 2021},
  series       = {{SPIE} Proceedings},
  volume       = {11596},
  publisher    = {{SPIE}},
  year         = {2021},
  url          = {https://doi.org/10.1117/12.2582340},
  doi          = {10.1117/12.2582340},
  timestamp    = {Thu, 21 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/LiZJLPO21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/LiZJLPO21a,
  author       = {Hao Li and
                  Huahong Zhang and
                  Hans J. Johnson and
                  Jeffrey D. Long and
                  Jane S. Paulsen and
                  Ipek Oguz},
  editor       = {Ivana Isgum and
                  Bennett A. Landman},
  title        = {{MRI} subcortical segmentation in neurodegeneration with cascaded
                  3D CNNs},
  booktitle    = {Medical Imaging 2021: Image Processing, Online, February 15-19, 2021},
  series       = {{SPIE} Proceedings},
  volume       = {11596},
  publisher    = {{SPIE}},
  year         = {2021},
  url          = {https://doi.org/10.1117/12.2582005},
  doi          = {10.1117/12.2582005},
  timestamp    = {Thu, 21 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/LiZJLPO21a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2107-04282,
  author       = {Dewei Hu and
                  Can Cui and
                  Hao Li and
                  Kathleen E. Larson and
                  Yuankai K. Tao and
                  Ipek Oguz},
  title        = {{LIFE:} {A} Generalizable Autodidactic Pipeline for 3D {OCT-A} Vessel
                  Segmentation},
  journal      = {CoRR},
  volume       = {abs/2107.04282},
  year         = {2021},
  url          = {https://arxiv.org/abs/2107.04282},
  eprinttype    = {arXiv},
  eprint       = {2107.04282},
  timestamp    = {Thu, 22 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2107-04282.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2107-04288,
  author       = {Dewei Hu and
                  Joseph D. Malone and
                  Yigit Atay and
                  Yuankai K. Tao and
                  Ipek Oguz},
  title        = {Retinal {OCT} Denoising with Pseudo-Multimodal Fusion Network},
  journal      = {CoRR},
  volume       = {abs/2107.04288},
  year         = {2021},
  url          = {https://arxiv.org/abs/2107.04288},
  eprinttype    = {arXiv},
  eprint       = {2107.04288},
  timestamp    = {Thu, 22 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2107-04288.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2109-12169,
  author       = {Hao Li and
                  Dewei Hu and
                  Qibang Zhu and
                  Kathleen E. Larson and
                  Huahong Zhang and
                  Ipek Oguz},
  title        = {Unsupervised Cross-Modality Domain Adaptation for Segmenting Vestibular
                  Schwannoma and Cochlea with Data Augmentation and Model Ensemble},
  journal      = {CoRR},
  volume       = {abs/2109.12169},
  year         = {2021},
  url          = {https://arxiv.org/abs/2109.12169},
  eprinttype    = {arXiv},
  eprint       = {2109.12169},
  timestamp    = {Mon, 04 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2109-12169.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/brainles-ws/ZhangO20,
  author       = {Huahong Zhang and
                  Ipek Oguz},
  editor       = {Alessandro Crimi and
                  Spyridon Bakas},
  title        = {Multiple Sclerosis Lesion Segmentation - {A} Survey of Supervised
                  CNN-Based Methods},
  booktitle    = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain
                  Injuries - 6th International Workshop, BrainLes 2020, Held in Conjunction
                  with {MICCAI} 2020, Lima, Peru, October 4, 2020, Revised Selected
                  Papers, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {12658},
  pages        = {11--29},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-72084-1\_2},
  doi          = {10.1007/978-3-030-72084-1\_2},
  timestamp    = {Mon, 06 Nov 2023 15:27:23 +0100},
  biburl       = {https://dblp.org/rec/conf/brainles-ws/ZhangO20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/HettJCPLO20,
  author       = {Kilian Hett and
                  Hans J. Johnson and
                  Pierrick Coup{\'{e}} and
                  Jane S. Paulsen and
                  Jeffrey D. Long and
                  Ipek Oguz},
  title        = {Tensor-Based Grading: {A} Novel Patch-Based Grading Approach for the
                  Analysis Of Deformation Fields in Huntington's Disease},
  booktitle    = {17th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2020, Iowa City, IA, USA, April 3-7, 2020},
  pages        = {1091--1095},
  publisher    = {{IEEE}},
  year         = {2020},
  url          = {https://doi.org/10.1109/ISBI45749.2020.9098692},
  doi          = {10.1109/ISBI45749.2020.9098692},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/HettJCPLO20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/PouchYAWOAYPWOG20,
  author       = {Alison M. Pouch and
                  Paul A. Yushkevich and
                  Abdullah H. Aly and
                  Alexander H. F. Woltersom and
                  Edidiong Okon and
                  Ahmed H. Aly and
                  Natalie Yushkevich and
                  Shobhana Parameshwaran and
                  Jiancong Wang and
                  Baris U. Oguz and
                  James C. Gee and
                  Ipek Oguz and
                  Nadav Schwartz},
  title        = {Automated Meshing of Anatomical Shapes for Deformable Medial Modeling:
                  Application to the Placenta in 3D Ultrasound},
  booktitle    = {17th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2020, Iowa City, IA, USA, April 3-7, 2020},
  pages        = {1842--1846},
  publisher    = {{IEEE}},
  year         = {2020},
  url          = {https://doi.org/10.1109/ISBI45749.2020.9098428},
  doi          = {10.1109/ISBI45749.2020.9098428},
  timestamp    = {Sun, 07 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/PouchYAWOAYPWOG20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ZhangBBO20,
  author       = {Huahong Zhang and
                  Rohit Bakshi and
                  Francesca Bagnato and
                  Ipek Oguz},
  editor       = {Mingxia Liu and
                  Pingkun Yan and
                  Chunfeng Lian and
                  Xiaohuan Cao},
  title        = {Robust Multiple Sclerosis Lesion Inpainting with Edge Prior},
  booktitle    = {Machine Learning in Medical Imaging - 11th International Workshop,
                  {MLMI} 2020, Held in Conjunction with {MICCAI} 2020, Lima, Peru, October
                  4, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12436},
  pages        = {120--129},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-59861-7\_13},
  doi          = {10.1007/978-3-030-59861-7\_13},
  timestamp    = {Tue, 18 Jan 2022 13:58:27 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/ZhangBBO20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/HuMATO20,
  author       = {Dewei Hu and
                  Joseph D. Malone and
                  Yigit Atay and
                  Yuankai K. Tao and
                  Ipek Oguz},
  editor       = {Huazhu Fu and
                  Mona Kathryn Garvin and
                  Tom J. MacGillivray and
                  Yanwu Xu and
                  Yalin Zheng},
  title        = {Retinal {OCT} Denoising with Pseudo-Multimodal Fusion Network},
  booktitle    = {Ophthalmic Medical Image Analysis - 7th International Workshop, {OMIA}
                  2020, Held in Conjunction with {MICCAI} 2020, Lima, Peru, October
                  8, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12069},
  pages        = {125--135},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-63419-3\_13},
  doi          = {10.1007/978-3-030-63419-3\_13},
  timestamp    = {Tue, 30 Mar 2021 18:55:06 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/HuMATO20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/LiZHJLPO20,
  author       = {Hao Li and
                  Huahong Zhang and
                  Dewei Hu and
                  Hans J. Johnson and
                  Jeffrey D. Long and
                  Jane S. Paulsen and
                  Ipek Oguz},
  editor       = {Seyed Mostafa Kia and
                  Hassan Mohy{-}ud{-}Din and
                  Ahmed Abdulkadir and
                  Cher Bass and
                  Mohamad Habes and
                  Jane Maryam Rondina and
                  Chantal M. W. Tax and
                  Hongzhi Wang and
                  Thomas Wolfers and
                  Saima Rathore and
                  Madhura Ingalhalikar},
  title        = {Generalizing {MRI} Subcortical Segmentation to Neurodegeneration},
  booktitle    = {Machine Learning in Clinical Neuroimaging and Radiogenomics in Neuro-oncology
                  - Third International Workshop, {MLCN} 2020, and Second International
                  Workshop, {RNO-AI} 2020, Held in Conjunction with {MICCAI} 2020, Lima,
                  Peru, October 4-8, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12449},
  pages        = {139--147},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-66843-3\_14},
  doi          = {10.1007/978-3-030-66843-3\_14},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/LiZHJLPO20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/HettGJPLO20,
  author       = {Kilian Hett and
                  R{\'{e}}mi Giraud and
                  Hans J. Johnson and
                  Jane S. Paulsen and
                  Jeffrey D. Long and
                  Ipek Oguz},
  editor       = {Anne L. Martel and
                  Purang Abolmaesumi and
                  Danail Stoyanov and
                  Diana Mateus and
                  Maria A. Zuluaga and
                  S. Kevin Zhou and
                  Daniel Racoceanu and
                  Leo Joskowicz},
  title        = {Patch-Based Abnormality Maps for Improved Deep Learning-Based Classification
                  of Huntington's Disease},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020,
                  Proceedings, Part {VII}},
  series       = {Lecture Notes in Computer Science},
  volume       = {12267},
  pages        = {636--645},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-59728-3\_62},
  doi          = {10.1007/978-3-030-59728-3\_62},
  timestamp    = {Mon, 26 Apr 2021 14:27:06 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/HettGJPLO20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/OguzMAT20,
  author       = {Ipek Oguz and
                  Joseph D. Malone and
                  Yigit Atay and
                  Yuankai K. Tao},
  editor       = {Ivana Isgum and
                  Bennett A. Landman},
  title        = {Self-fusion for {OCT} noise reduction},
  booktitle    = {Medical Imaging 2020: Image Processing, Houston, TX, USA, February
                  15-20, 2020},
  series       = {{SPIE} Proceedings},
  volume       = {11313},
  pages        = {113130C},
  publisher    = {{SPIE}},
  year         = {2020},
  url          = {https://doi.org/10.1117/12.2549472},
  doi          = {10.1117/12.2549472},
  timestamp    = {Tue, 21 Jul 2020 15:32:21 +0200},
  biburl       = {https://dblp.org/rec/conf/miip/OguzMAT20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/UffordVO20,
  author       = {Kathryn Ufford and
                  Simon N. Vandekar and
                  Ipek Oguz},
  editor       = {Ivana Isgum and
                  Bennett A. Landman},
  title        = {Joint intensity fusion with normalized cross-correlation metric for
                  cross-modality {MRI} synthesis (Conference Presentation)},
  booktitle    = {Medical Imaging 2020: Image Processing, Houston, TX, USA, February
                  15-20, 2020},
  series       = {{SPIE} Proceedings},
  volume       = {11313},
  pages        = {1131304},
  publisher    = {{SPIE}},
  year         = {2020},
  url          = {https://doi.org/10.1117/12.2550009},
  doi          = {10.1117/12.2550009},
  timestamp    = {Thu, 28 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miip/UffordVO20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2001-08651,
  author       = {Kilian Hett and
                  Hans J. Johnson and
                  Pierrick Coup{\'{e}} and
                  Jane S. Paulsen and
                  Jeffrey D. Long and
                  Ipek Oguz},
  title        = {Tensor-Based Grading: {A} Novel Patch-Based Grading Approach for the
                  Analysis of Deformation Fields in Huntington's Disease},
  journal      = {CoRR},
  volume       = {abs/2001.08651},
  year         = {2020},
  url          = {https://arxiv.org/abs/2001.08651},
  eprinttype    = {arXiv},
  eprint       = {2001.08651},
  timestamp    = {Fri, 24 Jan 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2001-08651.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2012-08317,
  author       = {Huahong Zhang and
                  Ipek Oguz},
  title        = {Multiple Sclerosis Lesion Segmentation - {A} Survey of Supervised
                  CNN-Based Methods},
  journal      = {CoRR},
  volume       = {abs/2012.08317},
  year         = {2020},
  url          = {https://arxiv.org/abs/2012.08317},
  eprinttype    = {arXiv},
  eprint       = {2012.08317},
  timestamp    = {Tue, 05 Jan 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2012-08317.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ni/YushkevichPOMSS19,
  author       = {Paul A. Yushkevich and
                  Artem Pashchinskiy and
                  Ipek Oguz and
                  Suyash Mohan and
                  J. Eric Schmitt and
                  Joel M. Stein and
                  Dzenan Zukic and
                  Jared Vicory and
                  Matthew McCormick and
                  Natalie Yushkevich and
                  Nadav Schwartz and
                  Yang Gao and
                  Guido Gerig},
  title        = {User-Guided Segmentation of Multi-modality Medical Imaging Datasets
                  with {ITK-SNAP}},
  journal      = {Neuroinformatics},
  volume       = {17},
  number       = {1},
  pages        = {83--102},
  year         = {2019},
  url          = {https://doi.org/10.1007/s12021-018-9385-x},
  doi          = {10.1007/S12021-018-9385-X},
  timestamp    = {Mon, 20 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ni/YushkevichPOMSS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ZhangVBCBSHO19,
  author       = {Huahong Zhang and
                  Alessandra M. Valcarcel and
                  Rohit Bakshi and
                  Renxin Chu and
                  Francesca Bagnato and
                  Russell T. Shinohara and
                  Kilian Hett and
                  Ipek Oguz},
  editor       = {Dinggang Shen and
                  Tianming Liu and
                  Terry M. Peters and
                  Lawrence H. Staib and
                  Caroline Essert and
                  Sean Zhou and
                  Pew{-}Thian Yap and
                  Ali R. Khan},
  title        = {Multiple Sclerosis Lesion Segmentation with Tiramisu and 2.5D Stacked
                  Slices},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2019 - 22nd International Conference, Shenzhen, China, October 13-17,
                  2019, Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {11766},
  pages        = {338--346},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://doi.org/10.1007/978-3-030-32248-9\_38},
  doi          = {10.1007/978-3-030-32248-9\_38},
  timestamp    = {Mon, 19 Feb 2024 14:24:13 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/ZhangVBCBSHO19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/midl/2019,
  editor       = {M. Jorge Cardoso and
                  Aasa Feragen and
                  Ben Glocker and
                  Ender Konukoglu and
                  Ipek Oguz and
                  Gozde B. Unal and
                  Tom Vercauteren},
  title        = {International Conference on Medical Imaging with Deep Learning, {MIDL}
                  2019, 8-10 July 2019, London, United Kingdom},
  series       = {Proceedings of Machine Learning Research},
  volume       = {102},
  publisher    = {{PMLR}},
  year         = {2019},
  url          = {http://proceedings.mlr.press/v102/},
  timestamp    = {Mon, 08 Jul 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/midl/2019.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1903-03929,
  author       = {Satyananda Kashyap and
                  Ipek Oguz and
                  Honghai Zhang and
                  Milan Sonka},
  title        = {Automated Segmentation of Knee {MRI} Using Hierarchical Classifiers
                  and Just Enough Interaction Based Learning: Data from Osteoarthritis
                  Initiative},
  journal      = {CoRR},
  volume       = {abs/1903.03929},
  year         = {2019},
  url          = {http://arxiv.org/abs/1903.03929},
  eprinttype    = {arXiv},
  eprint       = {1903.03929},
  timestamp    = {Sun, 31 Mar 2019 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1903-03929.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1907-08612,
  author       = {M. Jorge Cardoso and
                  Aasa Feragen and
                  Ben Glocker and
                  Ender Konukoglu and
                  Ipek Oguz and
                  Gozde B. Unal and
                  Tom Vercauteren},
  title        = {Medical Imaging with Deep Learning: {MIDL} 2019 - Extended Abstract
                  Track},
  journal      = {CoRR},
  volume       = {abs/1907.08612},
  year         = {2019},
  url          = {http://arxiv.org/abs/1907.08612},
  eprinttype    = {arXiv},
  eprint       = {1907.08612},
  timestamp    = {Tue, 30 Jul 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1907-08612.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/OguzWYPGYSO18,
  author       = {Baris U. Oguz and
                  Jiancong Wang and
                  Natalie Yushkevich and
                  Alison M. Pouch and
                  James C. Gee and
                  Paul A. Yushkevich and
                  Nadav Schwartz and
                  Ipek Oguz},
  editor       = {Andrew Melbourne and
                  Roxane Licandro and
                  Matthew D. DiFranco and
                  Paolo Rota and
                  Melanie Gau and
                  Martin Kampel and
                  Rosalind Aughwane and
                  Pim Moeskops and
                  Ernst Schwartz and
                  Emma C. Robinson and
                  Antonios Makropoulos},
  title        = {Combining Deep Learning and Multi-atlas Label Fusion for Automated
                  Placenta Segmentation from 3DUS},
  booktitle    = {Data Driven Treatment Response Assessment - and - Preterm, Perinatal,
                  and Paediatric Image Analysis - First International Workshop, {DATRA}
                  2018 - and - Third International Workshop, {PIPPI} 2018, Held in Conjunction
                  with {MICCAI} 2018, Granada, Spain, September 16, 2018, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11076},
  pages        = {138--148},
  publisher    = {Springer},
  year         = {2018},
  url          = {https://doi.org/10.1007/978-3-030-00807-9\_14},
  doi          = {10.1007/978-3-030-00807-9\_14},
  timestamp    = {Sun, 25 Oct 2020 23:09:57 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/OguzWYPGYSO18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2018sashimi,
  editor       = {Ali Gooya and
                  Orcun Goksel and
                  Ipek Oguz and
                  Ninon Burgos},
  title        = {Simulation and Synthesis in Medical Imaging - Third International
                  Workshop, {SASHIMI} 2018, Held in Conjunction with {MICCAI} 2018,
                  Granada, Spain, September 16, 2018, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11037},
  publisher    = {Springer},
  year         = {2018},
  url          = {https://doi.org/10.1007/978-3-030-00536-8},
  doi          = {10.1007/978-3-030-00536-8},
  isbn         = {978-3-030-00535-1},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/2018sashimi.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2018mlcn,
  editor       = {Danail Stoyanov and
                  Zeike Taylor and
                  Seyed Mostafa Kia and
                  Ipek Oguz and
                  Mauricio Reyes and
                  Anne L. Martel and
                  Lena Maier{-}Hein and
                  Andre F. Marquand and
                  Edouard Duchesnay and
                  Tommy L{\"{o}}fstedt and
                  Bennett A. Landman and
                  M. Jorge Cardoso and
                  Carlos A. Silva and
                  S{\'{e}}rgio Pereira and
                  Raphael Meier},
  title        = {Understanding and Interpreting Machine Learning in Medical Image Computing
                  Applications - First International Workshops {MLCN} 2018, {DLF} 2018,
                  and iMIMIC 2018, Held in Conjunction with {MICCAI} 2018, Granada,
                  Spain, September 16-20, 2018, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11038},
  publisher    = {Springer},
  year         = {2018},
  url          = {https://doi.org/10.1007/978-3-030-02628-8},
  doi          = {10.1007/978-3-030-02628-8},
  isbn         = {978-3-030-02627-1},
  timestamp    = {Fri, 05 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/2018mlcn.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/IsackVOSB17,
  author       = {Hossam N. Isack and
                  Olga Veksler and
                  Ipek Oguz and
                  Milan Sonka and
                  Yuri Boykov},
  title        = {Efficient Optimization for Hierarchically-Structured Interacting Segments
                  {(HINTS)}},
  booktitle    = {2017 {IEEE} Conference on Computer Vision and Pattern Recognition,
                  {CVPR} 2017, Honolulu, HI, USA, July 21-26, 2017},
  pages        = {4981--4989},
  publisher    = {{IEEE} Computer Society},
  year         = {2017},
  url          = {https://doi.org/10.1109/CVPR.2017.529},
  doi          = {10.1109/CVPR.2017.529},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cvpr/IsackVOSB17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/OguzCPRSCYSP17,
  author       = {Ipek Oguz and
                  Aaron Carass and
                  Dzung L. Pham and
                  Snehashis Roy and
                  Nagesh Subbana and
                  Peter A. Calabresi and
                  Paul A. Yushkevich and
                  Russell T. Shinohara and
                  Jerry L. Prince},
  editor       = {Alessandro Crimi and
                  Spyridon Bakas and
                  Hugo J. Kuijf and
                  Bjoern H. Menze and
                  Mauricio Reyes},
  title        = {Dice Overlap Measures for Objects of Unknown Number: Application to
                  Lesion Segmentation},
  booktitle    = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain
                  Injuries - Third International Workshop, BrainLes 2017, Held in Conjunction
                  with {MICCAI} 2017, Quebec City, QC, Canada, September 14, 2017, Revised
                  Selected Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {10670},
  pages        = {3--14},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-75238-9\_1},
  doi          = {10.1007/978-3-319-75238-9\_1},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/OguzCPRSCYSP17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/FleishmanVPRCYS17,
  author       = {Greg M. Fleishman and
                  Alessandra Valcarcel and
                  Dzung L. Pham and
                  Snehashis Roy and
                  Peter A. Calabresi and
                  Paul A. Yushkevich and
                  Russell T. Shinohara and
                  Ipek Oguz},
  editor       = {Alessandro Crimi and
                  Spyridon Bakas and
                  Hugo J. Kuijf and
                  Bjoern H. Menze and
                  Mauricio Reyes},
  title        = {Joint Intensity Fusion Image Synthesis Applied to Multiple Sclerosis
                  Lesion Segmentation},
  booktitle    = {Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain
                  Injuries - Third International Workshop, BrainLes 2017, Held in Conjunction
                  with {MICCAI} 2017, Quebec City, QC, Canada, September 14, 2017, Revised
                  Selected Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {10670},
  pages        = {43--54},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-75238-9\_4},
  doi          = {10.1007/978-3-319-75238-9\_4},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/FleishmanVPRCYS17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/DongOSCSY17,
  author       = {Mengjin Dong and
                  Ipek Oguz and
                  Nagesh Subbana and
                  Peter A. Calabresi and
                  Russell T. Shinohara and
                  Paul A. Yushkevich},
  editor       = {Guorong Wu and
                  Brent C. Munsell and
                  Yiqiang Zhan and
                  Wenjia Bai and
                  Gerard Sanroma and
                  Pierrick Coup{\'{e}}},
  title        = {Multiple Sclerosis Lesion Segmentation Using Joint Label Fusion},
  booktitle    = {Patch-Based Techniques in Medical Imaging - Third International Workshop,
                  Patch-MI 2017, Held in Conjunction with {MICCAI} 2017, Quebec City,
                  QC, Canada, September 14, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10530},
  pages        = {138--145},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67434-6\_16},
  doi          = {10.1007/978-3-319-67434-6\_16},
  timestamp    = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/DongOSCSY17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ChenWOVG17,
  author       = {Min Chen and
                  Jiancong Wang and
                  Ipek Oguz and
                  Brian L. Vanderbeek and
                  James C. Gee},
  editor       = {M. Jorge Cardoso and
                  Tal Arbel and
                  Andrew Melbourne and
                  Hrvoje Bogunovic and
                  Pim Moeskops and
                  Xinjian Chen and
                  Ernst Schwartz and
                  Mona Kathryn Garvin and
                  Emma C. Robinson and
                  Emanuele Trucco and
                  Michael Ebner and
                  Yanwu Xu and
                  Antonios Makropoulos and
                  Adrien E. Desjardins and
                  Tom Vercauteren},
  title        = {Automated Segmentation of the Choroid in {EDI-OCT} Images with Retinal
                  Pathology Using Convolution Neural Networks},
  booktitle    = {Fetal, Infant and Ophthalmic Medical Image Analysis - International
                  Workshop, {FIFI} 2017, and 4th International Workshop, {OMIA} 2017,
                  Held in Conjunction with {MICCAI} 2017, Qu{\'{e}}bec City, QC,
                  Canada, September 14, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10554},
  pages        = {177--184},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67561-9\_20},
  doi          = {10.1007/978-3-319-67561-9\_20},
  timestamp    = {Fri, 18 Mar 2022 08:05:49 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/ChenWOVG17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/OguzSYO17,
  author       = {Baris U. Oguz and
                  Russell T. Shinohara and
                  Paul A. Yushkevich and
                  Ipek Oguz},
  editor       = {Qian Wang and
                  Yinghuan Shi and
                  Heung{-}Il Suk and
                  Kenji Suzuki},
  title        = {Gradient Boosted Trees for Corrective Learning},
  booktitle    = {Machine Learning in Medical Imaging - 8th International Workshop,
                  {MLMI} 2017, Held in Conjunction with {MICCAI} 2017, Quebec City,
                  QC, Canada, September 10, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10541},
  pages        = {203--211},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67389-9\_24},
  doi          = {10.1007/978-3-319-67389-9\_24},
  timestamp    = {Wed, 16 Mar 2022 23:56:10 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/OguzSYO17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/GuoKSO17,
  author       = {Zhihui Guo and
                  Satyananda Kashyap and
                  Milan Sonka and
                  Ipek Oguz},
  editor       = {Martin A. Styner and
                  Elsa D. Angelini},
  title        = {Machine learning in a graph framework for subcortical segmentation},
  booktitle    = {Medical Imaging 2017: Image Processing, Orlando, Florida, United States,
                  11-16 February 2017},
  series       = {{SPIE} Proceedings},
  volume       = {10133},
  pages        = {101330H},
  publisher    = {{SPIE}},
  year         = {2017},
  url          = {https://doi.org/10.1117/12.2254874},
  doi          = {10.1117/12.2254874},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miip/GuoKSO17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ipmi/2017,
  editor       = {Marc Niethammer and
                  Martin Styner and
                  Stephen R. Aylward and
                  Hongtu Zhu and
                  Ipek Oguz and
                  Pew{-}Thian Yap and
                  Dinggang Shen},
  title        = {Information Processing in Medical Imaging - 25th International Conference,
                  {IPMI} 2017, Boone, NC, USA, June 25-30, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10265},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-59050-9},
  doi          = {10.1007/978-3-319-59050-9},
  isbn         = {978-3-319-59049-3},
  timestamp    = {Tue, 14 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ipmi/2017.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/IsackVOSB17,
  author       = {Hossam N. Isack and
                  Olga Veksler and
                  Ipek Oguz and
                  Milan Sonka and
                  Yuri Boykov},
  title        = {Efficient optimization for Hierarchically-structured Interacting Segments
                  {(HINTS)}},
  journal      = {CoRR},
  volume       = {abs/1703.10530},
  year         = {2017},
  url          = {http://arxiv.org/abs/1703.10530},
  eprinttype    = {arXiv},
  eprint       = {1703.10530},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/IsackVOSB17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cars/OguzCDPFVSW16,
  author       = {Ipek Oguz and
                  Joshua E. Cates and
                  Manasi Datar and
                  Beatriz Paniagua and
                  P. Thomas Fletcher and
                  Clement Vachet and
                  Martin Styner and
                  Ross T. Whitaker},
  title        = {Entropy-based particle correspondence for shape populations},
  journal      = {Int. J. Comput. Assist. Radiol. Surg.},
  volume       = {11},
  number       = {7},
  pages        = {1221--1232},
  year         = {2016},
  url          = {https://doi.org/10.1007/s11548-015-1319-6},
  doi          = {10.1007/S11548-015-1319-6},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cars/OguzCDPFVSW16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/KashyapOS16,
  author       = {Satyananda Kashyap and
                  Ipek Oguz and
                  Milan Sonka},
  title        = {Statistical shape analysis of automatically segmented femur bones:
                  Data from the osteoarthritis initiative},
  booktitle    = {13th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2016, Prague, Czech Republic, April 13-16, 2016},
  pages        = {651--655},
  publisher    = {{IEEE}},
  year         = {2016},
  url          = {https://doi.org/10.1109/ISBI.2016.7493351},
  doi          = {10.1109/ISBI.2016.7493351},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/KashyapOS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/KashyapOZS16,
  author       = {Satyananda Kashyap and
                  Ipek Oguz and
                  Honghai Zhang and
                  Milan Sonka},
  editor       = {S{\'{e}}bastien Ourselin and
                  Leo Joskowicz and
                  Mert R. Sabuncu and
                  G{\"{o}}zde B. {\"{U}}nal and
                  William M. Wells III},
  title        = {Automated Segmentation of Knee {MRI} Using Hierarchical Classifiers
                  and Just Enough Interaction Based Learning: Data from Osteoarthritis
                  Initiative},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2016 - 19th International Conference, Athens, Greece, October 17-21,
                  2016, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {9901},
  pages        = {344--351},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-3-319-46723-8\_40},
  doi          = {10.1007/978-3-319-46723-8\_40},
  timestamp    = {Fri, 08 Apr 2022 11:01:35 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/KashyapOZS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/OguzKWYS16,
  author       = {Ipek Oguz and
                  Satyananda Kashyap and
                  Hongzhi Wang and
                  Paul A. Yushkevich and
                  Milan Sonka},
  editor       = {S{\'{e}}bastien Ourselin and
                  Leo Joskowicz and
                  Mert R. Sabuncu and
                  G{\"{o}}zde B. {\"{U}}nal and
                  William M. Wells III},
  title        = {Globally Optimal Label Fusion with Shape Priors},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2016 - 19th International Conference, Athens, Greece, October 17-21,
                  2016, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {9901},
  pages        = {538--546},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-3-319-46723-8\_62},
  doi          = {10.1007/978-3-319-46723-8\_62},
  timestamp    = {Wed, 06 Jan 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/OguzKWYS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/LeeKOS16,
  author       = {Joohwi Lee and
                  Sun Hyung Kim and
                  Ipek Oguz and
                  Martin Styner},
  editor       = {Martin A. Styner and
                  Elsa D. Angelini},
  title        = {Enhanced cortical thickness measurements for rodent brains via Lagrangian-based
                  {RK4} streamline computation},
  booktitle    = {Medical Imaging 2016: Image Processing, San Diego, California, USA,
                  February 27, 2016},
  series       = {{SPIE} Proceedings},
  volume       = {9784},
  pages        = {97840B},
  publisher    = {{SPIE}},
  year         = {2016},
  url          = {https://doi.org/10.1117/12.2216420},
  doi          = {10.1117/12.2216420},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/LeeKOS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/OguzZAS16,
  author       = {Ipek Oguz and
                  Li Zhang and
                  Michael D. Abr{\`{a}}moff and
                  Milan Sonka},
  editor       = {Martin A. Styner and
                  Elsa D. Angelini},
  title        = {Optimal retinal cyst segmentation from {OCT} images},
  booktitle    = {Medical Imaging 2016: Image Processing, San Diego, California, USA,
                  February 27, 2016},
  series       = {{SPIE} Proceedings},
  volume       = {9784},
  pages        = {97841E},
  publisher    = {{SPIE}},
  year         = {2016},
  url          = {https://doi.org/10.1117/12.2217355},
  doi          = {10.1117/12.2217355},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miip/OguzZAS16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/OguzSSSS15,
  author       = {Ipek Oguz and
                  Martin Styner and
                  Mar Sanchez and
                  Yundi Shi and
                  Milan Sonka},
  editor       = {S{\'{e}}bastien Ourselin and
                  Martin Andreas Styner},
  title        = {{LOGISMOS-B} for primates: primate cortical surface reconstruction
                  and thickness measurement},
  booktitle    = {Medical Imaging 2015: Image Processing, Orlando, Florida, USA, February
                  24-26, 2015},
  series       = {{SPIE} Proceedings},
  volume       = {9413},
  pages        = {941313},
  publisher    = {{SPIE}},
  year         = {2015},
  url          = {https://doi.org/10.1117/12.2082327},
  doi          = {10.1117/12.2082327},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miip/OguzSSSS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fini/OguzFMBLGJS14,
  author       = {Ipek Oguz and
                  Mahshid Farzinfar and
                  Joy T. Matsui and
                  Fran{\c{c}}ois Budin and
                  Zhexing Liu and
                  Guido Gerig and
                  Hans J. Johnson and
                  Martin Andreas Styner},
  title        = {DTIPrep: quality control of diffusion-weighted images},
  journal      = {Frontiers Neuroinformatics},
  volume       = {8},
  pages        = {4},
  year         = {2014},
  url          = {https://doi.org/10.3389/fninf.2014.00004},
  doi          = {10.3389/FNINF.2014.00004},
  timestamp    = {Thu, 28 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fini/OguzFMBLGJS14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jmiv/SkwererBHMOOPPM14,
  author       = {Sean Skwerer and
                  Elizabeth Bullitt and
                  Stephan Huckemann and
                  Ezra Miller and
                  Ipek Oguz and
                  Megan Owen and
                  Vic Patrangenaru and
                  J. Scott Provan and
                  J. S. Marron},
  title        = {Tree-Oriented Analysis of Brain Artery Structure},
  journal      = {J. Math. Imaging Vis.},
  volume       = {50},
  number       = {1-2},
  pages        = {126--143},
  year         = {2014},
  url          = {https://doi.org/10.1007/s10851-013-0473-0},
  doi          = {10.1007/S10851-013-0473-0},
  timestamp    = {Mon, 08 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jmiv/SkwererBHMOOPPM14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/OguzS14,
  author       = {Ipek Oguz and
                  Milan Sonka},
  title        = {{LOGISMOS-B:} Layered Optimal Graph Image Segmentation of Multiple
                  Objects and Surfaces for the Brain},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {33},
  number       = {6},
  pages        = {1220--1235},
  year         = {2014},
  url          = {https://doi.org/10.1109/TMI.2014.2304499},
  doi          = {10.1109/TMI.2014.2304499},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/OguzS14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/OguzS14,
  author       = {Ipek Oguz and
                  Milan Sonka},
  editor       = {Polina Golland and
                  Nobuhiko Hata and
                  Christian Barillot and
                  Joachim Hornegger and
                  Robert D. Howe},
  title        = {Robust Cortical Thickness Measurement with {LOGISMOS-B}},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2014 - 17th International Conference, Boston, MA, USA, September 14-18,
                  2014, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {8673},
  pages        = {722--730},
  publisher    = {Springer},
  year         = {2014},
  url          = {https://doi.org/10.1007/978-3-319-10404-1\_90},
  doi          = {10.1007/978-3-319-10404-1\_90},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/OguzS14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fini/BudinHRGOO13,
  author       = {Fran{\c{c}}ois Budin and
                  Marion Hoogstoel and
                  Patrick Reynolds and
                  Michael Grauer and
                  Shonagh K. O'Leary{-}Moore and
                  Ipek Oguz},
  title        = {Fully automated rodent brain {MR} image processing pipeline on a Midas
                  server: from acquired images to region-based statistics},
  journal      = {Frontiers Neuroinformatics},
  volume       = {7},
  pages        = {15},
  year         = {2013},
  url          = {https://doi.org/10.3389/fninf.2013.00015},
  doi          = {10.3389/FNINF.2013.00015},
  timestamp    = {Thu, 28 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fini/BudinHRGOO13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fini/GrauerRHBSO13,
  author       = {Michael Grauer and
                  Patrick Reynolds and
                  Marion Hoogstoel and
                  Fran{\c{c}}ois Budin and
                  Martin Andreas Styner and
                  Ipek Oguz},
  title        = {A midas plugin to enable construction of reproducible web-based image
                  processing pipelines},
  journal      = {Frontiers Neuroinformatics},
  volume       = {7},
  pages        = {46},
  year         = {2013},
  url          = {https://doi.org/10.3389/fninf.2013.00046},
  doi          = {10.3389/FNINF.2013.00046},
  timestamp    = {Thu, 28 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fini/GrauerRHBSO13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/FarzinfarOSVDGEPPVGGDMPES13,
  author       = {Mahshid Farzinfar and
                  Ipek Oguz and
                  Rachel Gimpel Smith and
                  Audrey R. Verde and
                  Cheryl Dietrich and
                  Aditya Gupta and
                  Maria L. Escolar and
                  Joseph Piven and
                  Sonia Pujol and
                  Clement Vachet and
                  Sylvain Gouttard and
                  Guido Gerig and
                  Stephen Dager and
                  Robert C. McKinstry and
                  Sarah Paterson and
                  Alan C. Evans and
                  Martin Andreas Styner},
  title        = {Diffusion imaging quality control via entropy of principal direction
                  distribution},
  journal      = {NeuroImage},
  volume       = {82},
  pages        = {1--12},
  year         = {2013},
  url          = {https://doi.org/10.1016/j.neuroimage.2013.05.022},
  doi          = {10.1016/J.NEUROIMAGE.2013.05.022},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/FarzinfarOSVDGEPPVGGDMPES13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/LeeLOS13,
  author       = {Joohwi Lee and
                  Ilwoo Lyu and
                  Ipek Oguz and
                  Martin Andreas Styner},
  editor       = {Kensaku Mori and
                  Ichiro Sakuma and
                  Yoshinobu Sato and
                  Christian Barillot and
                  Nassir Navab},
  title        = {Particle-Guided Image Registration},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2013 - 16th International Conference, Nagoya, Japan, September 22-26,
                  2013, Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {8151},
  pages        = {203--210},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-642-40760-4\_26},
  doi          = {10.1007/978-3-642-40760-4\_26},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/LeeLOS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/FarzinfarLVOGS13,
  author       = {Mahshid Farzinfar and
                  Yin Li and
                  Audrey R. Verde and
                  Ipek Oguz and
                  Guido Gerig and
                  Martin A. Styner},
  editor       = {S{\'{e}}bastien Ourselin and
                  David R. Haynor},
  title        = {{DTI} quality control assessment via error estimation from Monte Carlo
                  simulations},
  booktitle    = {Medical Imaging 2013: Image Processing, Lake Buena Vista (Orlando
                  Area), Florida, USA, February 10-12, 2013},
  series       = {{SPIE} Proceedings},
  volume       = {8669},
  pages        = {86692C},
  publisher    = {{SPIE}},
  year         = {2013},
  url          = {https://doi.org/10.1117/12.2006925},
  doi          = {10.1117/12.2006925},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/FarzinfarLVOGS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/PaniaguaACSO11,
  author       = {Beatriz Paniagua and
                  Abeer Alhadidi and
                  Lucia H. S. Cevidanes and
                  Martin Styner and
                  Ipek Oguz},
  title        = {Mandibular asymmetry characterization using generalized tensor-based
                  morphometry},
  booktitle    = {Proceedings of the 8th {IEEE} International Symposium on Biomedical
                  Imaging: From Nano to Macro, {ISBI} 2011, March 30 - April 2, 2011,
                  Chicago, Illinois, {USA}},
  pages        = {1175--1178},
  publisher    = {{IEEE}},
  year         = {2011},
  url          = {https://doi.org/10.1109/ISBI.2011.5872611},
  doi          = {10.1109/ISBI.2011.5872611},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/PaniaguaACSO11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/BoucharinOVSSS11,
  author       = {Alexis Boucharin and
                  Ipek Oguz and
                  Clement Vachet and
                  Yundi Shi and
                  Mar Sanchez and
                  Martin Styner},
  editor       = {Benoit M. Dawant and
                  David R. Haynor},
  title        = {Efficient, graph-based white matter connectivity from orientation
                  distribution functions via multi-directional graph propagation},
  booktitle    = {Medical Imaging 2011: Image Processing, Lake Buena Vista, Florida,
                  USA, February 14-16, 2011},
  series       = {{SPIE} Proceedings},
  volume       = {7962},
  pages        = {79620S},
  publisher    = {{SPIE}},
  year         = {2011},
  url          = {https://doi.org/10.1117/12.878291},
  doi          = {10.1117/12.878291},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/BoucharinOVSSS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/OguzLBRMECJS11,
  author       = {Ipek Oguz and
                  Joohwi Lee and
                  Fran{\c{c}}ois Budin and
                  Ashley Rumple and
                  Matthew McMurray and
                  Cindy Ehlers and
                  Fulton Crews and
                  Josephine Johns and
                  Martin Styner},
  editor       = {Benoit M. Dawant and
                  David R. Haynor},
  title        = {Automatic skull-stripping of rat {MRI/DTI} scans and atlas building},
  booktitle    = {Medical Imaging 2011: Image Processing, Lake Buena Vista, Florida,
                  USA, February 14-16, 2011},
  series       = {{SPIE} Proceedings},
  volume       = {7962},
  pages        = {796225},
  publisher    = {{SPIE}},
  year         = {2011},
  url          = {https://doi.org/10.1117/12.878405},
  doi          = {10.1117/12.878405},
  timestamp    = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miip/OguzLBRMECJS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/VachetHNOCWPS11,
  author       = {Clement Vachet and
                  Heather Cody Hazlett and
                  Marc Niethammer and
                  Ipek Oguz and
                  Joshua E. Cates and
                  Ross T. Whitaker and
                  Joseph Piven and
                  Martin Styner},
  editor       = {Benoit M. Dawant and
                  David R. Haynor},
  title        = {Group-wise automatic mesh-based analysis of cortical thickness},
  booktitle    = {Medical Imaging 2011: Image Processing, Lake Buena Vista, Florida,
                  USA, February 14-16, 2011},
  series       = {{SPIE} Proceedings},
  volume       = {7962},
  pages        = {796227},
  publisher    = {{SPIE}},
  year         = {2011},
  url          = {https://doi.org/10.1117/12.878300},
  doi          = {10.1117/12.878300},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miip/VachetHNOCWPS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/LeeECNBPSJSO11,
  author       = {Joohwi Lee and
                  Cindy Ehlers and
                  Fulton Crews and
                  Marc Niethammer and
                  Fran{\c{c}}ois Budin and
                  Beatriz Paniagua and
                  Kathy Sulik and
                  Josephine Johns and
                  Martin Styner and
                  Ipek Oguz},
  editor       = {Benoit M. Dawant and
                  David R. Haynor},
  title        = {Automatic cortical thickness analysis on rodent brain},
  booktitle    = {Medical Imaging 2011: Image Processing, Lake Buena Vista, Florida,
                  USA, February 14-16, 2011},
  series       = {{SPIE} Proceedings},
  volume       = {7962},
  pages        = {796248},
  publisher    = {{SPIE}},
  year         = {2011},
  url          = {https://doi.org/10.1117/12.878305},
  doi          = {10.1117/12.878305},
  timestamp    = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miip/LeeECNBPSJSO11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miigp/LiuOPM10,
  author       = {Xiaoxiao Liu and
                  Ipek Oguz and
                  Stephen M. Pizer and
                  Gig S. Mageras},
  editor       = {Kenneth H. Wong and
                  Michael I. Miga},
  title        = {Shape-correlated deformation statistics for respiratory motion prediction
                  in 4D lung},
  booktitle    = {Medical Imaging 2010: Visualization, Image-Guided Procedures, and
                  Modeling, San Diego, California, United States, 13-18 February 2010},
  series       = {{SPIE} Proceedings},
  volume       = {7625},
  pages        = {76252D},
  publisher    = {{SPIE}},
  year         = {2010},
  url          = {https://doi.org/10.1117/12.843974},
  doi          = {10.1117/12.843974},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miigp/LiuOPM10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipmi/OguzNCWFVS09,
  author       = {Ipek Oguz and
                  Marc Niethammer and
                  Joshua E. Cates and
                  Ross T. Whitaker and
                  P. Thomas Fletcher and
                  Clement Vachet and
                  Martin Styner},
  editor       = {Jerry L. Prince and
                  Dzung L. Pham and
                  Kyle J. Myers},
  title        = {Cortical Correspondence with Probabilistic Fiber Connectivity},
  booktitle    = {Information Processing in Medical Imaging, 21st International Conference,
                  {IPMI} 2009, Williamsburg, VA, USA, July 5-10, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5636},
  pages        = {651--663},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-02498-6\_54},
  doi          = {10.1007/978-3-642-02498-6\_54},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ipmi/OguzNCWFVS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/StynerOHG08,
  author       = {Martin Styner and
                  Ipek Oguz and
                  Tobias Heimann and
                  Guido Gerig},
  title        = {Minimum description length with local geometry},
  booktitle    = {Proceedings of the 2008 {IEEE} International Symposium on Biomedical
                  Imaging: From Nano to Macro, Paris, France, May 14-17, 2008},
  pages        = {1283--1286},
  publisher    = {{IEEE}},
  year         = {2008},
  url          = {https://doi.org/10.1109/ISBI.2008.4541238},
  doi          = {10.1109/ISBI.2008.4541238},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/StynerOHG08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/OguzCFWCAS08,
  author       = {Ipek Oguz and
                  Joshua E. Cates and
                  P. Thomas Fletcher and
                  Ross T. Whitaker and
                  Derek Cool and
                  Stephen R. Aylward and
                  Martin Andreas Styner},
  title        = {Cortical correspondence using entropy-based particle systems and local
                  features},
  booktitle    = {Proceedings of the 2008 {IEEE} International Symposium on Biomedical
                  Imaging: From Nano to Macro, Paris, France, May 14-17, 2008},
  pages        = {1637--1640},
  publisher    = {{IEEE}},
  year         = {2008},
  url          = {https://doi.org/10.1109/ISBI.2008.4541327},
  doi          = {10.1109/ISBI.2008.4541327},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/OguzCFWCAS08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cvgip/WendtBOL07,
  author       = {Jeremy D. Wendt and
                  William V. Baxter III and
                  Ipek Oguz and
                  Ming C. Lin},
  title        = {Finite volume flow simulations on arbitrary domains},
  journal      = {Graph. Model.},
  volume       = {69},
  number       = {1},
  pages        = {19--32},
  year         = {2007},
  url          = {https://doi.org/10.1016/j.gmod.2006.05.004},
  doi          = {10.1016/J.GMOD.2006.05.004},
  timestamp    = {Fri, 21 Feb 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/cvgip/WendtBOL07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/StynerOXPG07,
  author       = {Martin Styner and
                  Ipek Oguz and
                  Shun Xu and
                  Dimitrios Pantazis and
                  Guido Gerig},
  editor       = {Josien P. W. Pluim and
                  Joseph M. Reinhardt},
  title        = {Statistical group differences in anatomical shape analysis using Hotelling
                  {T2} metric},
  booktitle    = {Medical Imaging 2007: Image Processing, San Diego, CA, United States,
                  17-22 February 2007},
  series       = {{SPIE} Proceedings},
  volume       = {6512},
  pages        = {65123Z},
  publisher    = {{SPIE}},
  year         = {2007},
  url          = {https://doi.org/10.1117/12.708467},
  doi          = {10.1117/12.708467},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/StynerOXPG07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/StynerOSCJ05,
  author       = {Martin Andreas Styner and
                  Ipek Oguz and
                  Rachel Gimpel Smith and
                  Carissa Cascio and
                  Matthieu Jomier},
  editor       = {James S. Duncan and
                  Guido Gerig},
  title        = {Corpus Callosum Subdivision Based on a Probabilistic Model of Inter-hemispheric
                  Connectivity},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2005, 8th International Conference, Palm Springs, CA, USA, October
                  26-29, 2005, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {3750},
  pages        = {765--772},
  publisher    = {Springer},
  year         = {2005},
  url          = {https://doi.org/10.1007/11566489\_94},
  doi          = {10.1007/11566489\_94},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/StynerOSCJ05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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