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ORCIDBibTeX records: Erik M. van Mulligen
@article{DBLP:journals/jamia/SeinenKMFR23,
author = {Tom M. Seinen and
Jan A. Kors and
Erik M. van Mulligen and
Egill A. Fridgeirsson and
Peter R. Rijnbeek},
title = {The added value of text from Dutch general practitioner notes in predictive
modeling},
journal = {J. Am. Medical Informatics Assoc.},
volume = {30},
number = {12},
pages = {1973--1984},
year = {2023},
url = {https://doi.org/10.1093/jamia/ocad160},
doi = {10.1093/JAMIA/OCAD160},
timestamp = {Mon, 11 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/SeinenKMFR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/SeinenFIJJKMPRW22,
author = {Tom M. Seinen and
Egill A. Fridgeirsson and
Solomon Ioannou and
Daniel Jeannetot and
Luis H. John and
Jan A. Kors and
Aniek F. Markus and
Victor Pera and
Alexandros Rekkas and
Ross D. Williams and
Cynthia Yang and
Erik M. van Mulligen and
Peter R. Rijnbeek},
title = {Use of unstructured text in prognostic clinical prediction models:
a systematic review},
journal = {J. Am. Medical Informatics Assoc.},
volume = {29},
number = {7},
pages = {1292--1302},
year = {2022},
url = {https://doi.org/10.1093/jamia/ocac058},
doi = {10.1093/JAMIA/OCAC058},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/SeinenFIJJKMPRW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/VlietstraVAMK20,
author = {Wytze J. Vlietstra and
Rein Vos and
Marjan van den Akker and
Erik M. van Mulligen and
Jan A. Kors},
title = {Identifying disease trajectories with predicate information from a
knowledge graph},
journal = {J. Biomed. Semant.},
volume = {11},
number = {1},
pages = {9},
year = {2020},
url = {https://doi.org/10.1186/s13326-020-00228-8},
doi = {10.1186/S13326-020-00228-8},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biomedsem/VlietstraVAMK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaaiss/VlietstraVMK19,
author = {Wytze Vlietstra and
Rein Vos and
Erik M. van Mulligen and
Jan A. Kors},
editor = {Andreas Martin and
Knut Hinkelmann and
Aurona Gerber and
Doug Lenat and
Frank van Harmelen and
Peter Clark},
title = {Using Predicate Information from a Knowledge Graph to Identify Disease
Trajectories},
booktitle = {Proceedings of the {AAAI} 2019 Spring Symposium on Combining Machine
Learning with Knowledge Engineering {(AAAI-MAKE} 2019) Stanford University,
Palo Alto, California, USA, March 25-27, 2019., Stanford University,
Palo Alto, California, USA, March 25-27, 2019},
series = {{CEUR} Workshop Proceedings},
volume = {2350},
publisher = {CEUR-WS.org},
year = {2019},
url = {https://ceur-ws.org/Vol-2350/xposter2.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:39 +0100},
biburl = {https://dblp.org/rec/conf/aaaiss/VlietstraVMK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/VlietstraVSMK18,
author = {Wytze J. Vlietstra and
Rein Vos and
Anneke M. Sijbers and
Erik M. van Mulligen and
Jan A. Kors},
title = {Using predicate and provenance information from a knowledge graph
for drug efficacy screening},
journal = {J. Biomed. Semant.},
volume = {9},
number = {1},
pages = {23:1--23:10},
year = {2018},
url = {https://doi.org/10.1186/s13326-018-0189-6},
doi = {10.1186/S13326-018-0189-6},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/VlietstraVSMK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SinghKMGBVF18,
author = {Gurnoor Singh and
Arnold Kuzniar and
Erik M. van Mulligen and
Anand Gavai and
Christian W. Bachem and
Richard G. F. Visser and
Richard Finkers},
title = {QTLTableMiner++: semantic mining of {QTL} tables in scientific articles},
journal = {{BMC} Bioinform.},
volume = {19},
number = {1},
pages = {183:1--183:11},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2165-7},
doi = {10.1186/S12859-018-2165-7},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SinghKMGBVF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/VlietstraZDSWVM17,
author = {Wytze J. Vlietstra and
Ronald Zielman and
Robin M. van Dongen and
Erik A. Schultes and
Floris Wiesman and
Rein Vos and
Erik M. van Mulligen and
Jan A. Kors},
title = {Automated extraction of potential migraine biomarkers using a semantic
graph},
journal = {J. Biomed. Informatics},
volume = {71},
pages = {178--189},
year = {2017},
url = {https://doi.org/10.1016/j.jbi.2017.05.018},
doi = {10.1016/J.JBI.2017.05.018},
timestamp = {Fri, 21 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/VlietstraZDSWVM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerj-cs/WilkinsonVSCSKG17,
author = {Mark D. Wilkinson and
Ruben Verborgh and
Luiz Olavo Bonino da Silva Santos and
Tim Clark and
Morris A. Swertz and
Fleur D. L. Kelpin and
Alasdair J. G. Gray and
Erik A. Schultes and
Erik M. van Mulligen and
Paolo Ciccarese and
Arnold Kuzniar and
Anand Gavai and
Mark Thompson and
Rajaram Kaliyaperumal and
Jerven T. Bolleman and
Michel Dumontier},
title = {Interoperability and FAIRness through a novel combination of Web technologies},
journal = {PeerJ Comput. Sci.},
volume = {3},
pages = {e110},
year = {2017},
url = {https://doi.org/10.7717/peerj-cs.110},
doi = {10.7717/PEERJ-CS.110},
timestamp = {Mon, 18 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/peerj-cs/WilkinsonVSCSKG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerjpre/WilkinsonVSCSKG17,
author = {Mark D. Wilkinson and
Ruben Verborgh and
Luiz Olavo Bonino da Silva Santos and
Tim Clark and
Morris A. Swertz and
Fleur D. L. Kelpin and
Alasdair J. G. Gray and
Erik A. Schultes and
Erik M. van Mulligen and
Paolo Ciccarese and
Arnold Kuzniar and
Anand Gavai and
Mark Thompson and
Rajaram Kaliyaperumal and
Jerven T. Bolleman and
Michel Dumontier},
title = {Interoperability and FAIRness through a novel combination of Web technologies},
journal = {PeerJ Prepr.},
volume = {5},
pages = {e2522},
year = {2017},
url = {https://doi.org/10.7287/peerj.preprints.2522v2},
doi = {10.7287/PEERJ.PREPRINTS.2522V2},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/peerjpre/WilkinsonVSCSKG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/AkhondiPAHBHMK16,
author = {Saber A. Akhondi and
Ewoud Pons and
Zubair Afzal and
Herman van Haagen and
Benedikt F. H. Becker and
Kristina M. Hettne and
Erik M. van Mulligen and
Jan A. Kors},
title = {Chemical entity recognition in patents by combining dictionary-based
and statistical approaches},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw061},
doi = {10.1093/DATABASE/BAW061},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/AkhondiPAHBHMK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/PonsBAAMK16,
author = {Ewoud Pons and
Benedikt F. H. Becker and
Saber A. Akhondi and
Zubair Afzal and
Erik M. van Mulligen and
Jan A. Kors},
title = {Extraction of chemical-induced diseases using prior knowledge and
textual information},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw046},
doi = {10.1093/DATABASE/BAW046},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/PonsBAAMK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/AfzalAHMK15a,
author = {Zubair Afzal and
Saber A. Akhondi and
Herman H. H. B. M. van Haagen and
Erik M. van Mulligen and
Jan A. Kors},
editor = {Norbert Fuhr and
Paulo Quaresma and
Teresa Gon{\c{c}}alves and
Birger Larsen and
Krisztian Balog and
Craig Macdonald and
Linda Cappellato and
Nicola Ferro},
title = {Concept Recognition in French Biomedical Text Using Automatic Translation},
booktitle = {Experimental {IR} Meets Multilinguality, Multimodality, and Interaction
- 7th International Conference of the {CLEF} Association, {CLEF} 2016,
{\'{E}}vora, Portugal, September 5-8, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9822},
pages = {162--173},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-44564-9\_13},
doi = {10.1007/978-3-319-44564-9\_13},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/clef/AfzalAHMK15a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/MulligenAAVK16,
author = {Erik M. van Mulligen and
Zubair Afzal and
Saber A. Akhondi and
Dang Vo and
Jan A. Kors},
editor = {Krisztian Balog and
Linda Cappellato and
Nicola Ferro and
Craig Macdonald},
title = {Erasmus {MC} at {CLEF} eHealth 2016: Concept Recognition and Coding
in French Texts},
booktitle = {Working Notes of {CLEF} 2016 - Conference and Labs of the Evaluation
forum, {\'{E}}vora, Portugal, 5-8 September, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1609},
pages = {171--178},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1609/16090171.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:40 +0100},
biburl = {https://dblp.org/rec/conf/clef/MulligenAAVK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ehealth2/Lopez-GarciaK0S16,
author = {Pablo L{\'{o}}pez{-}Garc{\'{\i}}a and
Markus Kreuzthaler and
Stefan Schulz and
Daniel Scherr and
Philipp Daumke and
Korn{\'{e}}l G. Mark{\'{o}} and
Jan A. Kors and
Erik M. van Mulligen and
Xinkai Wang and
Hanney Gonna and
Elijah Behr and
Angel Honrado},
editor = {G{\"{u}}nter Schreier and
Elske Ammenwerth and
Alexander H{\"{o}}rbst and
Dieter Hayn},
title = {{SEMCARE:} Multilingual Semantic Search in Semi-Structured Clinical
Data},
booktitle = {Health Informatics Meets eHealth - Predictive Modeling in Healthcare
- From Prediction to Prevention - Proceedings of the 10th eHealth2016
Conference, eHealth 2016, Vienna, Austria, May 2016},
series = {Studies in Health Technology and Informatics},
volume = {223},
pages = {93--99},
publisher = {{IOS} Press},
year = {2016},
url = {https://doi.org/10.3233/978-1-61499-645-3-93},
doi = {10.3233/978-1-61499-645-3-93},
timestamp = {Tue, 01 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ehealth2/Lopez-GarciaK0S16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/MulligenVVK16,
author = {Erik M. van Mulligen and
Wytze Vlietstra and
Rein Vos and
Jan A. Kors},
editor = {Adrian Paschke and
Albert Burger and
Andrea Splendiani and
M. Scott Marshall and
Paolo Romano},
title = {Discovering Information from an Integrated Graph Database},
booktitle = {Proceedings of the 9th International Conference Semantic Web Applications
and Tools for Life Sciences, Amsterdam, The Netherlands, December
5-8, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1795},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1795/paper34.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:02 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/MulligenVVK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerjpre/WilkinsonVSCSKG16,
author = {Mark D. Wilkinson and
Ruben Verborgh and
Luiz Olavo Bonino da Silva Santos and
Tim Clark and
Morris A. Swertz and
Fleur D. L. Kelpin and
Alasdair J. G. Gray and
Erik A. Schultes and
Erik M. van Mulligen and
Paolo Ciccarese and
Mark Thompson and
Rajaram Kaliyaperumal and
Jerven T. Bolleman and
Michel Dumontier},
title = {Interoperability and FAIRness through a novel combination of Web technologies},
journal = {PeerJ Prepr.},
volume = {4},
pages = {e2522},
year = {2016},
url = {https://doi.org/10.7287/peerj.preprints.2522v1},
doi = {10.7287/PEERJ.PREPRINTS.2522V1},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/peerjpre/WilkinsonVSCSKG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/KorsCAMR15,
author = {Jan A. Kors and
Simon Clematide and
Saber A. Akhondi and
Erik M. van Mulligen and
Dietrich Rebholz{-}Schuhmann},
title = {A multilingual gold-standard corpus for biomedical concept recognition:
the Mantra {GSC}},
journal = {J. Am. Medical Informatics Assoc.},
volume = {22},
number = {5},
pages = {948--956},
year = {2015},
url = {https://doi.org/10.1093/jamia/ocv037},
doi = {10.1093/JAMIA/OCV037},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/KorsCAMR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/AkhondiHHMK15,
author = {Saber A. Akhondi and
Kristina M. Hettne and
Eelke van der Horst and
Erik M. van Mulligen and
Jan A. Kors},
title = {Recognition of chemical entities: combining dictionary-based and grammar-based
approaches},
journal = {J. Cheminformatics},
volume = {7},
number = {{S-1}},
pages = {S10},
year = {2015},
url = {https://doi.org/10.1186/1758-2946-7-S1-S10},
doi = {10.1186/1758-2946-7-S1-S10},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcheminf/AkhondiHHMK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/DaumkeRFHKLSMHK15,
author = {Philipp Daumke and
Claudia Riede and
Thomas Fassbender and
Angel Honrado and
Markus Kreuzthaler and
Pablo L{\'{o}}pez{-}Garc{\'{\i}}a and
Stefan Schulz and
Erik M. van Mulligen and
Herman van Haagen and
Jan A. Kors and
Hanney Gonna and
Xinkai Wang and
Elijah Behr},
title = {{SEMCARE} - Semantic Data Platform for Healthcare},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t008-1.2744186/f008-1.2744187/2248054-1.2744218/2248254-1.2744215},
timestamp = {Wed, 17 Apr 2024 11:47:40 +0200},
biburl = {https://dblp.org/rec/conf/amia/DaumkeRFHKLSMHK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/AfzalAHMK15,
author = {Zubair Afzal and
Saber A. Akhondi and
Herman van Haagen and
Erik M. van Mulligen and
Jan A. Kors},
editor = {Linda Cappellato and
Nicola Ferro and
Gareth J. F. Jones and
Eric SanJuan},
title = {Biomedical Concept Recognition in French Text Using Automatic Translation
of English Terms},
booktitle = {Working Notes of {CLEF} 2015 - Conference and Labs of the Evaluation
forum, Toulouse, France, September 8-11, 2015},
series = {{CEUR} Workshop Proceedings},
volume = {1391},
publisher = {CEUR-WS.org},
year = {2015},
url = {https://ceur-ws.org/Vol-1391/36-CR.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:42 +0100},
biburl = {https://dblp.org/rec/conf/clef/AfzalAHMK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/MulligenVVK15,
author = {Erik M. van Mulligen and
Wytze Vlietstra and
Rein Vos and
Jan A. Kors},
editor = {James Malone and
Robert Stevens and
Kerstin Forsberg and
Andrea Splendiani},
title = {Information from Semantic Integration of Texts and Databases},
booktitle = {Proceedings of the 8th Semantic Web Applications and Tools for Life
Sciences International Conference, Cambridge UK, December 7-10, 2015},
series = {{CEUR} Workshop Proceedings},
volume = {1546},
pages = {231--240},
publisher = {CEUR-WS.org},
year = {2015},
url = {https://ceur-ws.org/Vol-1546/poster\_4.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:03 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/MulligenVVK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BuiSMK14,
author = {Quoc{-}Chinh Bui and
Peter M. A. Sloot and
Erik M. van Mulligen and
Jan A. Kors},
title = {A novel feature-based approach to extract drug-drug interactions from
biomedical text},
journal = {Bioinform.},
volume = {30},
number = {23},
pages = {3365--3371},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu557},
doi = {10.1093/BIOINFORMATICS/BTU557},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BuiSMK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KangSBAMK14,
author = {Ning Kang and
Bharat Singh and
Quoc{-}Chinh Bui and
Zubair Afzal and
Erik M. van Mulligen and
Jan A. Kors},
title = {Knowledge-based extraction of adverse drug events from biomedical
text},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {64},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-64},
doi = {10.1186/1471-2105-15-64},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KangSBAMK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/VosAMMBVA14,
author = {Rein Vos and
Sil Aarts and
Erik M. van Mulligen and
Job Metsemakers and
Martin P. van Boxtel and
Frans Verhey and
Marjan van den Akker},
title = {Finding potentially new multimorbidity patterns of psychiatric and
somatic diseases: exploring the use of literature-based discovery
in primary care research},
journal = {J. Am. Medical Informatics Assoc.},
volume = {21},
number = {1},
pages = {139--145},
year = {2014},
url = {https://doi.org/10.1136/amiajnl-2012-001448},
doi = {10.1136/AMIAJNL-2012-001448},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/VosAMMBVA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/HettneSMHTKMMKR14,
author = {Kristina M. Hettne and
Reinout van Schouwen and
Eleni Mina and
Eelke van der Horst and
Mark Thompson and
Rajaram Kaliyaperumal and
Barend Mons and
Erik M. van Mulligen and
Jan A. Kors and
Marco Roos},
title = {Explain your data by Concept Profile Analysis Web Services},
journal = {F1000Research},
volume = {3},
pages = {173},
year = {2014},
url = {https://doi.org/10.12688/f1000research.4830.1},
doi = {10.12688/F1000RESEARCH.4830.1},
timestamp = {Fri, 08 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/HettneSMHTKMMKR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/KangSAMK13,
author = {Ning Kang and
Bharat Singh and
Zubair Afzal and
Erik M. van Mulligen and
Jan A. Kors},
title = {Using rule-based natural language processing to improve disease normalization
in biomedical text},
journal = {J. Am. Medical Informatics Assoc.},
volume = {20},
number = {5},
pages = {876--881},
year = {2013},
url = {https://doi.org/10.1136/amiajnl-2012-001173},
doi = {10.1136/AMIAJNL-2012-001173},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/KangSAMK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/BuiCMK13,
author = {Quoc{-}Chinh Bui and
David Campos and
Erik M. van Mulligen and
Jan A. Kors},
editor = {Claire N{\'{e}}dellec and
Robert Bossy and
Jin{-}Dong Kim and
Jung{-}Jae Kim and
Tomoko Ohta and
Sampo Pyysalo and
Pierre Zweigenbaum},
title = {A fast rule-based approach for biomedical event extraction},
booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria,
August 9, 2013},
pages = {104--108},
publisher = {Association for Computational Linguistics},
year = {2013},
url = {https://aclanthology.org/W13-2014/},
timestamp = {Thu, 02 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/BuiCMK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/KorsCAMR13,
author = {Jan A. Kors and
Simon Clematide and
Saber A. Akhondi and
Erik M. van Mulligen and
Dietrich Rebholz{-}Schuhmann},
editor = {Pamela Forner and
Roberto Navigli and
Dan Tufis and
Nicola Ferro},
title = {Creating Multilingual Gold Standard Corpora for Biomedical Concept
Recognition},
booktitle = {Working Notes for {CLEF} 2013 Conference , Valencia, Spain, September
23-26, 2013},
series = {{CEUR} Workshop Proceedings},
volume = {1179},
publisher = {CEUR-WS.org},
year = {2013},
url = {https://ceur-ws.org/Vol-1179/CLEF2013wn-CLEFER-KorsEt2013.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:37 +0100},
biburl = {https://dblp.org/rec/conf/clef/KorsCAMR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/MulligenBK13,
author = {Erik M. van Mulligen and
Quoc{-}Chinh Bui and
Jan A. Kors},
editor = {Pamela Forner and
Roberto Navigli and
Dan Tufis and
Nicola Ferro},
title = {Machine Translation of Bio-Thesauri},
booktitle = {Working Notes for {CLEF} 2013 Conference , Valencia, Spain, September
23-26, 2013},
series = {{CEUR} Workshop Proceedings},
volume = {1179},
publisher = {CEUR-WS.org},
year = {2013},
url = {https://ceur-ws.org/Vol-1179/CLEF2013wn-CLEFER-vanMulligenEt2013.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/clef/MulligenBK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/Rebholz-SchuhmannCRKMBHLMPJHK13,
author = {Dietrich Rebholz{-}Schuhmann and
Simon Clematide and
Fabio Rinaldi and
Senay Kafkas and
Erik M. van Mulligen and
Quoc{-}Chinh Bui and
Johannes Hellrich and
Ian Lewin and
David Milward and
Michael Poprat and
Antonio Jimeno{-}Yepes and
Udo Hahn and
Jan A. Kors},
editor = {Pamela Forner and
Henning M{\"{u}}ller and
Roberto Paredes and
Paolo Rosso and
Benno Stein},
title = {Entity Recognition in Parallel Multi-lingual Biomedical Corpora: The
{CLEF-ER} Laboratory Overview},
booktitle = {Information Access Evaluation. Multilinguality, Multimodality, and
Visualization - 4th International Conference of the {CLEF} Initiative,
{CLEF} 2013, Valencia, Spain, September 23-26, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8138},
pages = {353--367},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40802-1\_32},
doi = {10.1007/978-3-642-40802-1\_32},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/clef/Rebholz-SchuhmannCRKMBHLMPJHK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/Rebholz-SchuhmannCRKMBHLMPJHK13a,
author = {Dietrich Rebholz{-}Schuhmann and
Simon Clematide and
Fabio Rinaldi and
Senay Kafkas and
Erik M. van Mulligen and
Quoc{-}Chinh Bui and
Johannes Hellrich and
Ian Lewin and
David Milward and
Michael Poprat and
Antonio Jimeno{-}Yepes and
Udo Hahn and
Jan A. Kors},
editor = {Pamela Forner and
Roberto Navigli and
Dan Tufis and
Nicola Ferro},
title = {Multilingual Semantic Resources and Parallel Corpora in the Biomedical
Domain: the {CLEF-ER} Challenge},
booktitle = {Working Notes for {CLEF} 2013 Conference , Valencia, Spain, September
23-26, 2013},
series = {{CEUR} Workshop Proceedings},
volume = {1179},
publisher = {CEUR-WS.org},
year = {2013},
url = {https://ceur-ws.org/Vol-1179/CLEF2013wn-CLEFER-Rebholz-SchuhmannEt2013.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/clef/Rebholz-SchuhmannCRKMBHLMPJHK13a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KangMK12,
author = {Ning Kang and
Erik M. van Mulligen and
Jan A. Kors},
title = {Training text chunkers on a silver standard corpus: can silver replace
gold?},
journal = {{BMC} Bioinform.},
volume = {13},
pages = {17},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-17},
doi = {10.1186/1471-2105-13-17},
timestamp = {Wed, 08 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KangMK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/KangASMK12,
author = {Ning Kang and
Zubair Afzal and
Bharat Singh and
Erik M. van Mulligen and
Jan A. Kors},
title = {Using an ensemble system to improve concept extraction from clinical
records},
journal = {J. Biomed. Informatics},
volume = {45},
number = {3},
pages = {423--428},
year = {2012},
url = {https://doi.org/10.1016/j.jbi.2011.12.009},
doi = {10.1016/J.JBI.2011.12.009},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/KangASMK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/MulligenFGMNTKF12,
author = {Erik M. van Mulligen and
Annie Fourrier{-}R{\'{e}}glat and
David Gurwitz and
Mariam Molokhia and
Ainhoa Nieto and
Gianluca Trifir{\`{o}} and
Jan A. Kors and
Laura In{\'{e}}s Furlong},
title = {The {EU-ADR} corpus: Annotated drugs, diseases, targets, and their
relationships},
journal = {J. Biomed. Informatics},
volume = {45},
number = {5},
pages = {879--884},
year = {2012},
url = {https://doi.org/10.1016/j.jbi.2012.04.004},
doi = {10.1016/J.JBI.2012.04.004},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/MulligenFGMNTKF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/Bauer-MehrenMACGPSLODHBMSKF12,
author = {Anna Bauer{-}Mehren and
Erik M. van Mulligen and
Paul Avillach and
Mar{\'{\i}}a del Carmen Carrascosa and
Ricard Garc{\'{\i}}a{-}Serna and
Janet Pi{\~{n}}ero Gonz{\'{a}}lez and
Bharat Singh and
Pedro Lopes and
Jos{\'{e}} Lu{\'{\i}}s Oliveira and
Gayo Diallo and
Ernst Ahlberg Helgee and
Scott Boyer and
Jordi Mestres and
Ferran Sanz and
Jan A. Kors and
Laura In{\'{e}}s Furlong},
title = {Automatic Filtering and Substantiation of Drug Safety Signals},
journal = {PLoS Comput. Biol.},
volume = {8},
number = {4},
year = {2012},
url = {https://doi.org/10.1371/journal.pcbi.1002457},
doi = {10.1371/JOURNAL.PCBI.1002457},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/Bauer-MehrenMACGPSLODHBMSKF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/KafkasLMMKHR12,
author = {Senay Kafkas and
Ian Lewin and
David Milward and
Erik M. van Mulligen and
Jan A. Kors and
Udo Hahn and
Dietrich Rebholz{-}Schuhmann},
editor = {Nicoletta Calzolari and
Khalid Choukri and
Thierry Declerck and
Mehmet Ugur Dogan and
Bente Maegaard and
Joseph Mariani and
Jan Odijk and
Stelios Piperidis},
title = {{CALBC:} Releasing the Final Corpora},
booktitle = {Proceedings of the Eighth International Conference on Language Resources
and Evaluation, {LREC} 2012, Istanbul, Turkey, May 23-25, 2012},
pages = {2923--2926},
publisher = {European Language Resources Association {(ELRA)}},
year = {2012},
url = {http://www.lrec-conf.org/proceedings/lrec2012/summaries/827.html},
timestamp = {Mon, 19 Aug 2019 14:40:54 +0200},
biburl = {https://dblp.org/rec/conf/lrec/KafkasLMMKHR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/Rebholz-SchuhmannJL11,
author = {Dietrich Rebholz{-}Schuhmann and
Antonio Jimeno{-}Yepes and
Chen Li and
Senay Kafkas and
Ian Lewin and
Ning Kang and
Peter T. Corbett and
David Milward and
Ekaterina Buyko and
Elena Beisswanger and
Kerstin Hornbostel and
Alexandre Kouznetsov and
Ren{\'{e}} Witte and
Jonas B. Laurila and
Christopher J. O. Baker and
Cheng{-}Ju Kuo and
Simon Clematide and
Fabio Rinaldi and
Rich{\'{a}}rd Farkas and
Gy{\"{o}}rgy M{\'{o}}ra and
Kazuo Hara and
Laura In{\'{e}}s Furlong and
Michael Rautschka and
Mariana L. Neves and
Alberto D. Pascual{-}Montano and
Qi Wei and
Nigel Collier and
Md. Faisal Mahbub Chowdhury and
Alberto Lavelli and
Rafael Berlanga Llavori and
Roser Morante and
Vincent Van Asch and
Walter Daelemans and
Jos{\'{e}} Lu{\'{\i}}s Marina and
Erik M. van Mulligen and
Jan A. Kors and
Udo Hahn},
title = {Assessment of {NER} solutions against the first and second {CALBC}
Silver Standard Corpus},
journal = {J. Biomed. Semant.},
volume = {2},
number = {{S-5}},
pages = {S11},
year = {2011},
url = {http://www.jbiomedsem.com/content/2/S5/S11},
timestamp = {Thu, 14 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biomedsem/Rebholz-SchuhmannJL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/KangMK11,
author = {Ning Kang and
Erik M. van Mulligen and
Jan A. Kors},
title = {Comparing and combining chunkers of biomedical text},
journal = {J. Biomed. Informatics},
volume = {44},
number = {2},
pages = {354--360},
year = {2011},
url = {https://doi.org/10.1016/j.jbi.2010.10.005},
doi = {10.1016/J.JBI.2010.10.005},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/KangMK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/HettneMSSK10,
author = {Kristina M. Hettne and
Erik M. van Mulligen and
Martijn J. Schuemie and
Bob J. A. Schijvenaars and
Jan A. Kors},
title = {Rewriting and suppressing {UMLS} terms for improved biomedical term
identification},
journal = {J. Biomed. Semant.},
volume = {1},
pages = {5},
year = {2010},
url = {https://doi.org/10.1186/2041-1480-1-5},
doi = {10.1186/2041-1480-1-5},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/HettneMSSK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/Rebholz-SchuhmannJMKKMCBBH10,
author = {Dietrich Rebholz{-}Schuhmann and
Antonio Jimeno{-}Yepes and
Erik M. van Mulligen and
Ning Kang and
Jan A. Kors and
David Milward and
Peter T. Corbett and
Ekaterina Buyko and
Elena Beisswanger and
Udo Hahn},
title = {Calbc Silver Standard Corpus},
journal = {J. Bioinform. Comput. Biol.},
volume = {8},
number = {1},
pages = {163--179},
year = {2010},
url = {https://doi.org/10.1142/S0219720010004562},
doi = {10.1142/S0219720010004562},
timestamp = {Wed, 08 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/Rebholz-SchuhmannJMKKMCBBH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/HettneWMKTK10,
author = {Kristina M. Hettne and
Antony J. Williams and
Erik M. van Mulligen and
Jos Kleinjans and
Valery Tkachenko and
Jan A. Kors},
title = {Automatic vs. manual curation of a multi-source chemical dictionary:
the impact on text mining},
journal = {J. Cheminformatics},
volume = {2},
pages = {3},
year = {2010},
url = {https://doi.org/10.1186/1758-2946-2-3},
doi = {10.1186/1758-2946-2-3},
timestamp = {Thu, 14 Feb 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcheminf/HettneWMKTK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/HettneWMKTK10a,
author = {Kristina M. Hettne and
Antony J. Williams and
Erik M. van Mulligen and
Jos Kleinjans and
Valery Tkachenko and
Jan A. Kors},
title = {Automatic vs. manual curation of a multi-source chemical dictionary:
the impact on text mining (Correction)},
journal = {J. Cheminformatics},
volume = {2},
pages = {4},
year = {2010},
url = {https://doi.org/10.1186/1758-2946-2-4},
doi = {10.1186/1758-2946-2-4},
timestamp = {Thu, 14 Feb 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcheminf/HettneWMKTK10a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/Rebholz-SchuhmannJMKKMCBTBH10,
author = {Dietrich Rebholz{-}Schuhmann and
Antonio Jos{\'{e}} Jimeno{-}Yepes and
Erik M. van Mulligen and
Ning Kang and
Jan A. Kors and
David Milward and
Peter T. Corbett and
Ekaterina Buyko and
Katrin Tomanek and
Elena Beisswanger and
Udo Hahn},
editor = {Nicoletta Calzolari and
Khalid Choukri and
Bente Maegaard and
Joseph Mariani and
Jan Odijk and
Stelios Piperidis and
Mike Rosner and
Daniel Tapias},
title = {The {CALBC} Silver Standard Corpus for Biomedical Named Entities -
{A} Study in Harmonizing the Contributions from Four Independent Named
Entity Taggers},
booktitle = {Proceedings of the International Conference on Language Resources
and Evaluation, {LREC} 2010, 17-23 May 2010, Valletta, Malta},
publisher = {European Language Resources Association},
year = {2010},
url = {http://www.lrec-conf.org/proceedings/lrec2010/summaries/888.html},
timestamp = {Wed, 08 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/lrec/Rebholz-SchuhmannJMKKMCBTBH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/smbm/Rebholz10,
author = {Dietrich Rebholz{-}Schuhmann and
Antonio Jimeno{-}Yepes and
Chen Li and
Senay Kafkas and
Ian Lewin and
Ning Kang and
Peter T. Corbett and
David Milward and
Ekaterina Buyko and
Elena Beisswanger and
Kerstin Hornbostel and
Alexandre Kouznetsov and
Ren{\'{e}} Witte and
Jonas B. Laurila and
Christopher J. O. Baker and
Cheng{-}Ju Kuo and
Simon Clematide and
Fabio Rinaldi and
Rich{\'{a}}rd Farkas and
Gy{\"{o}}rgy M{\'{o}}ra and
Kazuo Hara and
Laura In{\'{e}}s Furlong and
Michael Rautschka and
Mariana L. Neves and
Alberto D. Pascual{-}Montano and
Qi Wei and
Nigel Collier and
Md. Faisal Mahbub Chowdhury and
Alberto Lavelli and
Rafael Berlanga Llavori and
Roser Morante and
Vincent Van Asch and
Walter Daelemans and
Jos{\'{e}} Lu{\'{\i}}s Marina and
Erik M. van Mulligen and
Jan A. Kors and
Udo Hahn},
editor = {Nigel Collier and
Udo Hahn and
Dietrich Rebholz{-}Schuhmann and
Fabio Rinaldi and
Sampo Pyysalo},
title = {Assessment of {NER} solutions against the first and second {CALBC}
silver standard corpus},
booktitle = {Proceedings of the Fourth International Symposium for Semantic Mining
in Biomedicine, Cambridge, United Kingdom, October, 2010},
series = {{CEUR} Workshop Proceedings},
volume = {714},
publisher = {CEUR-WS.org},
year = {2010},
url = {https://ceur-ws.org/Vol-714/Paper08\_RebholzSchuhmann.pdf},
timestamp = {Thu, 14 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/smbm/Rebholz10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/KangBASSMK10,
author = {Ning Kang and
Rogier Barendse and
Zubair Afzal and
Bharat Singh and
Martijn J. Schuemie and
Erik M. van Mulligen and
Jan A. Kors},
editor = {Albert Burger and
M. Scott Marshall and
Paolo Romano and
Adrian Paschke and
Andrea Splendiani},
title = {A Concept Annotation System for Clinical Records},
booktitle = {Proceedings of the Workshop on Semantic Web Applications and Tools
for Life Sciences, Berlin, Germany, December 10, 2010},
series = {{CEUR} Workshop Proceedings},
volume = {698},
publisher = {CEUR-WS.org},
year = {2010},
url = {https://ceur-ws.org/Vol-698/poster9.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:03 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/KangBASSMK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1012-1663,
author = {Ning Kang and
Rogier Barendse and
Zubair Afzal and
Bharat Singh and
Martijn J. Schuemie and
Erik M. van Mulligen and
Jan A. Kors},
title = {A Concept Annotation System for Clinical Records},
journal = {CoRR},
volume = {abs/1012.1663},
year = {2010},
url = {http://arxiv.org/abs/1012.1663},
eprinttype = {arXiv},
eprint = {1012.1663},
timestamp = {Wed, 08 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1012-1663.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchulzBHBM09,
author = {Stefan Schulz and
Elena Beisswanger and
L{\'{a}}szl{\'{o}} van den Hoek and
Olivier Bodenreider and
Erik M. van Mulligen},
title = {Alignment of the {UMLS} semantic network with BioTop: methodology
and assessment},
journal = {Bioinform.},
volume = {25},
number = {12},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp194},
doi = {10.1093/BIOINFORMATICS/BTP194},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchulzBHBM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HettneSSHSMKK09,
author = {Kristina M. Hettne and
Rob H. Stierum and
Martijn J. Schuemie and
Peter J. M. Hendriksen and
Bob J. A. Schijvenaars and
Erik M. van Mulligen and
Jos Kleinjans and
Jan A. Kors},
title = {A dictionary to identify small molecules and drugs in free text},
journal = {Bioinform.},
volume = {25},
number = {22},
pages = {2983--2991},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp535},
doi = {10.1093/BIOINFORMATICS/BTP535},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HettneSSHSMKK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/JelierSRMK08,
author = {Rob Jelier and
Martijn J. Schuemie and
Peter{-}Jan Roes and
Erik M. van Mulligen and
Jan A. Kors},
title = {Literature-based concept profiles for gene annotation: The issue of
weighting},
journal = {Int. J. Medical Informatics},
volume = {77},
number = {5},
pages = {354--362},
year = {2008},
url = {https://doi.org/10.1016/j.ijmedinf.2007.07.004},
doi = {10.1016/J.IJMEDINF.2007.07.004},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijmi/JelierSRMK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/MulligenCHMWROCM08,
author = {Erik M. van Mulligen and
Montserrat Cases and
Kristina M. Hettne and
Eva Molero and
Marc Weeber and
Kevin A. Robertson and
Baldomero Oliva and
Guillermo de la Calle and
Victor Maojo},
title = {Model Formulation: Training Multidisciplinary Biomedical Informatics
Students: Three Years of Experience},
journal = {J. Am. Medical Informatics Assoc.},
volume = {15},
number = {2},
pages = {246--254},
year = {2008},
url = {https://doi.org/10.1197/jamia.M2488},
doi = {10.1197/JAMIA.M2488},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/MulligenCHMWROCM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/StenzhornSBHHM08,
author = {Holger Stenzhorn and
Stefan Schulz and
Elena Beisswanger and
Udo Hahn and
L{\'{a}}szl{\'{o}} van den Hoek and
Erik M. van Mulligen},
editor = {Christian Bizer and
Anupam Joshi},
title = {BioTop and ChemTop - Top-Domain Ontologies for Biology and Chemistry},
booktitle = {Proceedings of the Poster and Demonstration Session at the 7th International
Semantic Web Conference (ISWC2008), Karlsruhe, Germany, October 28,
2008},
series = {{CEUR} Workshop Proceedings},
volume = {401},
publisher = {CEUR-WS.org},
year = {2008},
url = {https://ceur-ws.org/Vol-401/iswc2008pd\_submission\_36.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:06 +0100},
biburl = {https://dblp.org/rec/conf/semweb/StenzhornSBHHM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Rebholz-SchuhmannCCMCHMMPBTL07,
author = {Dietrich Rebholz{-}Schuhmann and
Graham Cameron and
Dominic Clark and
Erik M. van Mulligen and
Jean{-}Louis Coatrieux and
Eva del Hoyo{-}Barbolla and
Fernando Mart{\'{\i}}n{-}S{\'{a}}nchez and
Luciano Milanesi and
Ivan Porro and
Francesco Beltrame and
Ioannis G. Tollis and
Johan van der Lei},
title = {SYMBIOmatics: Synergies in Medical Informatics and Bioinformatics
- exploring current scientific literature for emerging topics},
journal = {{BMC} Bioinform.},
volume = {8},
number = {{S-1}},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-S1-S18},
doi = {10.1186/1471-2105-8-S1-S18},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Rebholz-SchuhmannCCMCHMMPBTL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/BansardRCCMBHMMTLC07,
author = {Jean{-}Yves Bansard and
Dietrich Rebholz{-}Schuhmann and
Graham Cameron and
Dominic Clark and
Erik M. van Mulligen and
Francesco Beltrame and
Eva del Hoyo{-}Barbolla and
Fernando Mart{\'{\i}}n{-}S{\'{a}}nchez and
Luciano Milanesi and
Ioannis G. Tollis and
Johan van der Lei and
Jean{-}Louis Coatrieux},
title = {Medical Informatics and Bioinformatics: {A} Bibliometric Study},
journal = {{IEEE} Trans. Inf. Technol. Biomed.},
volume = {11},
number = {3},
pages = {237--243},
year = {2007},
url = {https://doi.org/10.1109/TITB.2007.894795},
doi = {10.1109/TITB.2007.894795},
timestamp = {Wed, 13 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/titb/BansardRCCMBHMMTLC07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/BemmelMMWKL06,
author = {Jan H. van Bemmel and
Erik M. van Mulligen and
Barend Mons and
Mark A. van Wijk and
Jan A. Kors and
Johan van der Lei},
title = {Databases for knowledge discovery: Examples from biomedicine and health
care},
journal = {Int. J. Medical Informatics},
volume = {75},
number = {3-4},
pages = {257--267},
year = {2006},
url = {https://doi.org/10.1016/j.ijmedinf.2005.08.012},
doi = {10.1016/J.IJMEDINF.2005.08.012},
timestamp = {Fri, 21 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijmi/BemmelMMWKL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/krmed/MulligenMRWMM06,
author = {Erik M. van Mulligen and
Erik M{\"{o}}ller and
Peter{-}Jan Roes and
Marc Weeber and
Gerard Meijssen and
Barend Mons},
editor = {Olivier Bodenreider},
title = {An Online Ontology: WiktionaryZ},
booktitle = {{KR-MED} 2006, Formal Biomedical Knowledge Representation, Proceedings
of the Second International Workshop on Formal Biomedical Knowledge
Representation: "Biomedical Ontology in Action" {(KR-MED} 2006), Collocated
with the 4th International Conference on Formal Ontology in Information
Systems (FOIS-2006), Baltimore, Maryland, USA, November 8, 2006},
series = {{CEUR} Workshop Proceedings},
volume = {222},
publisher = {CEUR-WS.org},
year = {2006},
url = {https://ceur-ws.org/Vol-222/krmed2006-p04.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:31 +0100},
biburl = {https://dblp.org/rec/conf/krmed/MulligenMRWMM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JelierJDEMMK05,
author = {Rob Jelier and
Guido Jenster and
Lambert C. J. Dorssers and
C. Christiaan van der Eijk and
Erik M. van Mulligen and
Barend Mons and
Jan A. Kors},
title = {Co-occurrence based meta-analysis of scientific texts: retrieving
biological relationships between genes},
journal = {Bioinform.},
volume = {21},
number = {9},
pages = {2049--2058},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti268},
doi = {10.1093/BIOINFORMATICS/BTI268},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JelierJDEMMK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchijvenaarsMWSMWK05,
author = {Bob J. A. Schijvenaars and
Barend Mons and
Marc Weeber and
Martijn J. Schuemie and
Erik M. van Mulligen and
Hester M. Wain and
Jan A. Kors},
title = {Thesaurus-based disambiguation of gene symbols},
journal = {{BMC} Bioinform.},
volume = {6},
pages = {149},
year = {2005},
url = {https://doi.org/10.1186/1471-2105-6-149},
doi = {10.1186/1471-2105-6-149},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SchijvenaarsMWSMWK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/SchijvenaarsSMWJMKK05,
author = {Bob J. A. Schijvenaars and
Martijn J. Schuemie and
Erik M. van Mulligen and
Marc Weeber and
Rob Jelier and
Barend Mons and
Jan A. Kors and
Wessel Kraaij},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {{TREC} 2005 Genomics Track {A} Concept-Based Approach to Text Categorization},
booktitle = {Proceedings of the Fourteenth Text REtrieval Conference, {TREC} 2005,
Gaithersburg, Maryland, USA, November 15-18, 2005},
series = {{NIST} Special Publication},
volume = {500-266},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2005},
url = {http://trec.nist.gov/pubs/trec14/papers/erasmus-tno.geo.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/SchijvenaarsSMWJMKK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/StuckenschmidtSM05,
author = {Heiner Stuckenschmidt and
Wolf Siberski and
Erik M. van Mulligen},
editor = {Carole A. Goble and
Carl Kesselman and
York Sure},
title = {Towards Mapping-Based Document Retrieval in Heterogeneous Digital
Libraries},
booktitle = {Semantic Grid: The Convergence of Technologies, 3.-8. July 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05271},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2005},
url = {http://drops.dagstuhl.de/opus/volltexte/2005/385},
timestamp = {Thu, 10 Jun 2021 13:02:08 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/StuckenschmidtSM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchuemieWSMEJMK04,
author = {Martijn J. Schuemie and
Marc Weeber and
Bob J. A. Schijvenaars and
Erik M. van Mulligen and
C. Christiaan van der Eijk and
Rob Jelier and
Barend Mons and
Jan A. Kors},
title = {Distribution of information in biomedical abstracts and full-text
publications},
journal = {Bioinform.},
volume = {20},
number = {16},
pages = {2597--2604},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth291},
doi = {10.1093/BIOINFORMATICS/BTH291},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchuemieWSMEJMK04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/expert/StuckenschmidtHWSBBCFKBM04,
author = {Heiner Stuckenschmidt and
Frank van Harmelen and
Anita de Waard and
Tony Scerri and
Ravinder Bhogal and
Jan van Buel and
Ian Crowlesmith and
Christiaan Fluit and
Arjohn Kampman and
Jeen Broekstra and
Erik M. van Mulligen},
title = {Exploring Large Document Repositories with {RDF} Technology: The {DOPE}
Project},
journal = {{IEEE} Intell. Syst.},
volume = {19},
number = {3},
pages = {34--40},
year = {2004},
url = {https://doi.org/10.1109/MIS.2004.9},
doi = {10.1109/MIS.2004.9},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/expert/StuckenschmidtHWSBBCFKBM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jasis/EijkMKMB04,
author = {C. Christiaan van der Eijk and
Erik M. van Mulligen and
Jan A. Kors and
Barend Mons and
Jan van den Berg},
title = {Constructing an associative concept space for literature-based discovery},
journal = {J. Assoc. Inf. Sci. Technol.},
volume = {55},
number = {5},
pages = {436--444},
year = {2004},
url = {https://doi.org/10.1002/asi.10392},
doi = {10.1002/ASI.10392},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jasis/EijkMKMB04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ekaw/StuckenschmidtWBFKBMBCHS04,
author = {Heiner Stuckenschmidt and
Anita de Waard and
Ravinder Bhogal and
Christiaan Fluit and
Arjohn Kampman and
Jan van Buel and
Erik M. van Mulligen and
Jeen Broekstra and
Ian Crowlesmith and
Frank van Harmelen and
Tony Scerri},
editor = {Enrico Motta and
Nigel Shadbolt and
Arthur Stutt and
Nicholas Gibbins},
title = {A Topic-Based Browser for Large Online Resources},
booktitle = {Engineering Knowledge in the Age of the Semantic Web, 14th International
Conference, {EKAW} 2004, Whittlebury Hall, UK, October 5-8, 2004,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3257},
pages = {433--448},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30202-5\_29},
doi = {10.1007/978-3-540-30202-5\_29},
timestamp = {Tue, 14 May 2019 10:00:39 +0200},
biburl = {https://dblp.org/rec/conf/ekaw/StuckenschmidtWBFKBMBCHS04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/MulligenDSWEJSK04,
author = {Erik M. van Mulligen and
Mario Diwersy and
Bob J. A. Schijvenaars and
Marc Weeber and
C. Christiaan van der Eijk and
Rob Jelier and
Martijn J. Schuemie and
Jan A. Kors and
Barend Mons},
editor = {Marius Fieschi and
Enrico W. Coiera and
Yu{-}Chuan (Jack) Li},
title = {Contextual Annotation of Web Pages for Interactive Browsing},
booktitle = {{MEDINFO} 2004 - Proceedings of the 11th World Congress on Medical
Informatics, San Francisco, California, USA, September 7-11, 2004},
series = {Studies in Health Technology and Informatics},
volume = {107},
pages = {94--98},
publisher = {{IOS} Press},
year = {2004},
url = {https://doi.org/10.3233/978-1-60750-949-3-94},
doi = {10.3233/978-1-60750-949-3-94},
timestamp = {Wed, 17 Aug 2022 16:35:51 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/MulligenDSWEJSK04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/www/BroekstraFKHSBSWM04,
author = {Jeen Broekstra and
Christiaan Fluit and
Arjohn Kampman and
Frank van Harmelen and
Heiner Stuckenschmidt and
Ravinder Bhogal and
Antony Scerri and
Anita de Waard and
Erik M. van Mulligen},
editor = {Christoph Bussler and
Stefan Decker and
Daniel Schwabe and
Oscar Pastor},
title = {The Drug Ontology Project for Elsevier - An {RDF} Architecture Enabling
Thesaurus-Driven Data Integration},
booktitle = {Proceedings of the {WWW2004} Workshop on Application Design, Development
and Implementation Issues in the Semantic Web, New York, NY, USA,
May 18, 2004},
series = {{CEUR} Workshop Proceedings},
volume = {105},
publisher = {CEUR-WS.org},
year = {2004},
url = {https://ceur-ws.org/Vol-105/DOPE\_WWW.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:22 +0100},
biburl = {https://dblp.org/rec/conf/www/BroekstraFKHSBSWM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/JelierJDMMK03,
author = {Rob Jelier and
Guido Jenster and
Lambert C. J. Dorssers and
Erik M. van Mulligen and
Barend Mons and
Jan A. Kors},
title = {Mining Microarray Datasets Aided by Knowledge Stored in Literature},
booktitle = {{AMIA} 2003, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 8-12, 2003},
publisher = {{AMIA}},
year = {2003},
url = {https://knowledge.amia.org/amia-55142-a2003a-1.616734/t-002-1.618748/f-001-1.618749/a-262-1.619301/a-263-1.619298},
timestamp = {Wed, 17 Apr 2024 11:48:28 +0200},
biburl = {https://dblp.org/rec/conf/amia/JelierJDMMK03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SchijvenaarsMDWEJKM03,
author = {Bob J. A. Schijvenaars and
Erik M. van Mulligen and
Mario Diwersy and
Marc Weeber and
C. Christiaan van der Eijk and
Rob Jelier and
Jan A. Kors and
Barend Mons},
title = {Using Contextual Queries},
booktitle = {{AMIA} 2003, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 8-12, 2003},
publisher = {{AMIA}},
year = {2003},
url = {https://knowledge.amia.org/amia-55142-a2003a-1.616734/t-002-1.618748/f-001-1.618749/a-379-1.618947/a-380-1.618944},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SchijvenaarsMDWEJKM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WeeberSMMJEK03,
author = {Marc Weeber and
Bob J. A. Schijvenaars and
Erik M. van Mulligen and
Barend Mons and
Rob Jelier and
C. Christiaan van der Eijk and
Jan A. Kors},
title = {Ambiguity of Human Gene Symbols in LocusLink and {MEDLINE:} Creating
an Inventory and a Disambiguation Test Collection},
booktitle = {{AMIA} 2003, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 8-12, 2003},
publisher = {{AMIA}},
year = {2003},
url = {https://knowledge.amia.org/amia-55142-a2003a-1.616734/t-001-1.619623/f-001-1.619624/a-142-1.619668/a-143-1.619665},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WeeberSMMJEK03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/JelierSEWMSMK03,
author = {Rob Jelier and
Martijn J. Schuemie and
C. Christiaan van der Eijk and
Marc Weeber and
Erik M. van Mulligen and
Bob J. A. Schijvenaars and
Barend Mons and
Jan A. Kors},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Searching for geneRIFs: Concept-Based Query Expansion and Bayes Classification},
booktitle = {Proceedings of The Twelfth Text REtrieval Conference, {TREC} 2003,
Gaithersburg, Maryland, USA, November 18-21, 2003},
series = {{NIST} Special Publication},
volume = {500-255},
pages = {225--233},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2003},
url = {http://trec.nist.gov/pubs/trec12/papers/erasmusu.genomics.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/JelierSEWMSMK03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MulligenEKSM02,
author = {Erik M. van Mulligen and
C. Christiaan van der Eijk and
Jan A. Kors and
Bob J. A. Schijvenaars and
Barend Mons},
title = {Research for research: tools for knowledge discovery and visualization},
booktitle = {{AMIA} 2002, American Medical Informatics Association Annual Symposium,
San Antonio, TX, USA, November 9-13, 2002},
publisher = {{AMIA}},
year = {2002},
url = {https://knowledge.amia.org/amia-55142-a2002a-1.610020/t-001-1.612667/f-001-1.612668/a-168-1.612744/a-169-1.612741},
timestamp = {Wed, 17 Apr 2024 11:48:33 +0200},
biburl = {https://dblp.org/rec/conf/amia/MulligenEKSM02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/MulligenMSDD01,
author = {Erik M. van Mulligen and
Barend Mons and
Martin Schmidt and
Mario Diwersy and
Achim Domma},
editor = {Vimla L. Patel and
Ray Rogers and
Reinhold Haux},
title = {Architecture for Information Mediation},
booktitle = {{MEDINFO} 2001 - Proceedings of the 10th World Congress on Medical
Informatics, September 2-5, 2001, London, {UK}},
series = {Studies in Health Technology and Informatics},
volume = {84},
pages = {301},
publisher = {{IOS} Press},
year = {2001},
url = {https://doi.org/10.3233/978-1-60750-928-8-301},
doi = {10.3233/978-1-60750-928-8-301},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/MulligenMSDD01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MulligenDSBM00,
author = {Erik M. van Mulligen and
Mario Diwersy and
Martin Schmidt and
Henk Buurman and
Barend Mons},
title = {Facilitating networks of information},
booktitle = {{AMIA} 2000, American Medical Informatics Association Annual Symposium,
Los Angeles, CA, USA, November 4-8, 2000},
publisher = {{AMIA}},
year = {2000},
url = {https://knowledge.amia.org/amia-55142-a2000a-1.606968/t-001-1.609408/f-001-1.609409/a-175-1.609452/a-176-1.609449},
timestamp = {Wed, 17 Apr 2024 11:48:44 +0200},
biburl = {https://dblp.org/rec/conf/amia/MulligenDSBM00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/Mulligen99,
author = {Erik M. van Mulligen},
title = {UMLS-based access to {CPR} data},
journal = {Int. J. Medical Informatics},
volume = {53},
number = {2-3},
pages = {125--131},
year = {1999},
url = {https://doi.org/10.1016/S1386-5056(98)00153-1},
doi = {10.1016/S1386-5056(98)00153-1},
timestamp = {Fri, 21 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijmi/Mulligen99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MulligenSG98,
author = {Erik M. van Mulligen and
Henk J. Stam and
Astrid M. van Ginneken},
title = {Clinical data entry},
booktitle = {{AMIA} 1998, American Medical Informatics Association Annual Symposium,
Lake Buena Vista, FL, USA, November 7-11, 1998},
publisher = {{AMIA}},
year = {1998},
url = {https://knowledge.amia.org/amia-55142-a1998a-1.588514/t-001-1.590475/f-001-1.590476/a-011-1.591002/a-012-1.590999},
timestamp = {Wed, 17 Apr 2024 11:48:54 +0200},
biburl = {https://dblp.org/rec/conf/amia/MulligenSG98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/Mulligen98,
author = {Erik M. van Mulligen},
editor = {Branko Cesnik and
Alexa Thorlichen McCray and
Jean{-}Raoul Scherrer},
title = {UMLS-based Access to {CPR} Data},
booktitle = {{MEDINFO} '98 - 9th World Congress on Medical Informatics, Seoul,
South Korea, August 14-21, 1998},
series = {Studies in Health Technology and Informatics},
volume = {52},
pages = {166--170},
publisher = {{IOS} Press},
year = {1998},
url = {https://doi.org/10.3233/978-1-60750-896-0-166},
doi = {10.3233/978-1-60750-896-0-166},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/Mulligen98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/GinnekenWMS97,
author = {Astrid M. van Ginneken and
Marcel de Wilde and
Erik M. van Mulligen and
Henk J. Stam},
title = {Can data representation and interface demands be reconciled? Approach
in {ORCA}},
booktitle = {{AMIA} 1997, American Medical Informatics Association Annual Symposium,
Nashville, TN, USA, October 25-29, 1997},
publisher = {{AMIA}},
year = {1997},
url = {https://knowledge.amia.org/amia-55142-a1997a-1.585351/t-001-1.587519/f-001-1.587520/a-154-1.587554/a-155-1.587551},
timestamp = {Wed, 17 Apr 2024 11:48:58 +0200},
biburl = {https://dblp.org/rec/conf/amia/GinnekenWMS97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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