BibTeX records: Marc Modat

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@article{DBLP:journals/mia/DorentKIBRJGCMB23,
  author       = {Reuben Dorent and
                  Aaron Kujawa and
                  Marina Ivory and
                  Spyridon Bakas and
                  Nicola Rieke and
                  Samuel Joutard and
                  Ben Glocker and
                  M. Jorge Cardoso and
                  Marc Modat and
                  Kayhan Batmanghelich and
                  Arseniy Belkov and
                  Maria G. Baldeon Calisto and
                  Jae Won Choi and
                  Benoit M. Dawant and
                  Hexin Dong and
                  Sergio Escalera and
                  Yubo Fan and
                  Lasse Hansen and
                  Mattias P. Heinrich and
                  Smriti Joshi and
                  Victoriya Kashtanova and
                  Hyeongyu Kim and
                  Satoshi Kondo and
                  Christian N. Kruse and
                  Susana K. Lai{-}Yuen and
                  Hao Li and
                  Han Liu and
                  Buntheng Ly and
                  Ipek Oguz and
                  Hyungseob Shin and
                  Boris Shirokikh and
                  Zixian Su and
                  Guotai Wang and
                  Jianghao Wu and
                  Yanwu Xu and
                  Kai Yao and
                  Li Zhang and
                  S{\'{e}}bastien Ourselin and
                  Jonathan Shapey and
                  Tom Vercauteren},
  title        = {CrossMoDA 2021 challenge: Benchmark of cross-modality domain adaptation
                  techniques for vestibular schwannoma and cochlea segmentation},
  journal      = {Medical Image Anal.},
  volume       = {83},
  pages        = {102628},
  year         = {2023},
  url          = {https://doi.org/10.1016/j.media.2022.102628},
  doi          = {10.1016/J.MEDIA.2022.102628},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/DorentKIBRJGCMB23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/HeringHMCSHLKHSVRSEVHHYBBJMLRLLJVFR23,
  author       = {Alessa Hering and
                  Lasse Hansen and
                  Tony C. W. Mok and
                  Albert C. S. Chung and
                  Hanna Siebert and
                  Stephanie H{\"{a}}ger and
                  Annkristin Lange and
                  Sven Kuckertz and
                  Stefan Heldmann and
                  Wei Shao and
                  Sulaiman Vesal and
                  Mirabela Rusu and
                  Geoffrey A. Sonn and
                  Th{\'{e}}o Estienne and
                  Maria Vakalopoulou and
                  Luyi Han and
                  Yunzhi Huang and
                  Pew{-}Thian Yap and
                  Mikael Brudfors and
                  Ya{\"{e}}l Balbastre and
                  Samuel Joutard and
                  Marc Modat and
                  Gal Lifshitz and
                  Dan Raviv and
                  Jinxin Lv and
                  Qiang Li and
                  Vincent Jaouen and
                  Dimitris Visvikis and
                  Constance Fourcade and
                  Mathieu Rubeaux and
                  Wentao Pan and
                  Zhe Xu and
                  Bailiang Jian and
                  Francesca De Benetti and
                  Marek Wodzinski and
                  Niklas Gunnarsson and
                  Jens Sj{\"{o}}lund and
                  Daniel Grzech and
                  Huaqi Qiu and
                  Zeju Li and
                  Alexander Thorley and
                  Jinming Duan and
                  Christoph Gro{\ss}br{\"{o}}hmer and
                  Andrew Hoopes and
                  Ingerid Reinertsen and
                  Yiming Xiao and
                  Bennett A. Landman and
                  Yuankai Huo and
                  Keelin Murphy and
                  Nikolas Lessmann and
                  Bram van Ginneken and
                  Adrian V. Dalca and
                  Mattias P. Heinrich},
  title        = {Learn2Reg: Comprehensive Multi-Task Medical Image Registration Challenge,
                  Dataset and Evaluation in the Era of Deep Learning},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {42},
  number       = {3},
  pages        = {697--712},
  year         = {2023},
  url          = {https://doi.org/10.1109/TMI.2022.3213983},
  doi          = {10.1109/TMI.2022.3213983},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/HeringHMCSHLKHSVRSEVHHYBBJMLRLLJVFR23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2307-15208,
  author       = {Walter H. L. Pinaya and
                  Mark S. Graham and
                  Eric Kerfoot and
                  Petru{-}Daniel Tudosiu and
                  Jessica Dafflon and
                  Virginia Fernandez and
                  Pedro Sanchez and
                  Julia Wolleb and
                  Pedro F. Da Costa and
                  Ashay Patel and
                  Hyungjin Chung and
                  Can Zhao and
                  Wei Peng and
                  Zelong Liu and
                  XueYan Mei and
                  Oeslle Lucena and
                  Jong Chul Ye and
                  Sotirios A. Tsaftaris and
                  Prerna Dogra and
                  Andrew Feng and
                  Marc Modat and
                  Parashkev Nachev and
                  S{\'{e}}bastien Ourselin and
                  M. Jorge Cardoso},
  title        = {Generative {AI} for Medical Imaging: extending the {MONAI} Framework},
  journal      = {CoRR},
  volume       = {abs/2307.15208},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2307.15208},
  doi          = {10.48550/ARXIV.2307.15208},
  eprinttype    = {arXiv},
  eprint       = {2307.15208},
  timestamp    = {Tue, 01 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2307-15208.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/CasamitjanaLFPM22,
  author       = {Adri{\`{a}} Casamitjana and
                  Marco Lorenzi and
                  Sebastiano Ferraris and
                  Lo{\"{\i}}c Peter and
                  Marc Modat and
                  Allison Stevens and
                  Bruce Fischl and
                  Tom Vercauteren and
                  Juan Eugenio Iglesias},
  title        = {Robust joint registration of multiple stains and {MRI} for multimodal
                  3D histology reconstruction: Application to the Allen human brain
                  atlas},
  journal      = {Medical Image Anal.},
  volume       = {75},
  pages        = {102265},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.media.2021.102265},
  doi          = {10.1016/J.MEDIA.2021.102265},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/mia/CasamitjanaLFPM22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/GrigorescuUCCHB22,
  author       = {Irina Grigorescu and
                  Alena Uus and
                  Daan Christiaens and
                  Lucilio Cordero{-}Grande and
                  Jana Hutter and
                  Dafnis Batalle and
                  A. David Edwards and
                  Joseph V. Hajnal and
                  Marc Modat and
                  Maria Deprez},
  editor       = {Roxane Licandro and
                  Andrew Melbourne and
                  Esra Abaci Turk and
                  Christopher K. Macgowan and
                  Jana Hutter},
  title        = {Attention-Driven Multi-channel Deformable Registration of Structural
                  and Microstructural Neonatal Data},
  booktitle    = {Perinatal, Preterm and Paediatric Image Analysis - 7th International
                  Workshop, {PIPPI} 2022, Held in Conjunction with {MICCAI} 2022, Singapore,
                  September 18, 2022, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {13575},
  pages        = {71--81},
  publisher    = {Springer},
  year         = {2022},
  url          = {https://doi.org/10.1007/978-3-031-17117-8\_7},
  doi          = {10.1007/978-3-031-17117-8\_7},
  timestamp    = {Tue, 27 Sep 2022 21:07:01 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/GrigorescuUCCHB22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/JoutardDOVM22,
  author       = {Samuel Joutard and
                  Reuben Dorent and
                  S{\'{e}}bastien Ourselin and
                  Tom Vercauteren and
                  Marc Modat},
  editor       = {Chunfeng Lian and
                  Xiaohuan Cao and
                  Islem Rekik and
                  Xuanang Xu and
                  Zhiming Cui},
  title        = {Driving Points Prediction for Abdominal Probabilistic Registration},
  booktitle    = {Machine Learning in Medical Imaging - 13th International Workshop,
                  {MLMI} 2022, Held in Conjunction with {MICCAI} 2022, Singapore, September
                  18, 2022, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {13583},
  pages        = {288--297},
  publisher    = {Springer},
  year         = {2022},
  url          = {https://doi.org/10.1007/978-3-031-21014-3\_30},
  doi          = {10.1007/978-3-031-21014-3\_30},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/JoutardDOVM22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/JoutardDVM22,
  author       = {Samuel Joutard and
                  Reuben Dorent and
                  Tom Vercauteren and
                  Marc Modat},
  editor       = {Olivier Colliot and
                  Ivana Isgum and
                  Bennett A. Landman and
                  Murray H. Loew},
  title        = {A Pareto front based methodology to better assess medical image registration
                  algorithms},
  booktitle    = {Medical Imaging 2022: Image Processing, San Diego, CA, USA, February
                  20-24, 2022 / Online, March 21-27, 2022},
  series       = {{SPIE} Proceedings},
  volume       = {12032},
  publisher    = {{SPIE}},
  year         = {2022},
  url          = {https://doi.org/10.1117/12.2611081},
  doi          = {10.1117/12.2611081},
  timestamp    = {Thu, 21 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/JoutardDVM22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wbir/JoutardPAWDPVMM22,
  author       = {Samuel Joutard and
                  Thomas S. Pheiffer and
                  Chlo{\'{e}} Audigier and
                  Patrick Wohlfahrt and
                  Reuben Dorent and
                  Sebastien Piat and
                  Tom Vercauteren and
                  Marc Modat and
                  Tommaso Mansi},
  editor       = {Alessa Hering and
                  Julia A. Schnabel and
                  Miaomiao Zhang and
                  Enzo Ferrante and
                  Mattias P. Heinrich and
                  Daniel Rueckert},
  title        = {A Multi-organ Point Cloud Registration Algorithm for Abdominal {CT}
                  Registration},
  booktitle    = {Biomedical Image Registration - 10th International Workshop, {WBIR}
                  2022, Munich, Germany, July 10-12, 2022, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {13386},
  pages        = {75--84},
  publisher    = {Springer},
  year         = {2022},
  url          = {https://doi.org/10.1007/978-3-031-11203-4\_9},
  doi          = {10.1007/978-3-031-11203-4\_9},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/wbir/JoutardPAWDPVMM22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2201-02831,
  author       = {Reuben Dorent and
                  Aaron Kujawa and
                  Marina Ivory and
                  Spyridon Bakas and
                  Nicola Rieke and
                  Samuel Joutard and
                  Ben Glocker and
                  Jorge Cardoso and
                  Marc Modat and
                  Kayhan Batmanghelich and
                  Arseniy Belkov and
                  Maria G. Baldeon Calisto and
                  Jae Won Choi and
                  Benoit M. Dawant and
                  Hexin Dong and
                  Sergio Escalera and
                  Yubo Fan and
                  Lasse Hansen and
                  Mattias P. Heinrich and
                  Smriti Joshi and
                  Victoriya Kashtanova and
                  Hyeongyu Kim and
                  Satoshi Kondo and
                  Christian N. Kruse and
                  Susana K. Lai{-}Yuen and
                  Hao Li and
                  Han Liu and
                  Buntheng Ly and
                  Ipek Oguz and
                  Hyungseob Shin and
                  Boris Shirokikh and
                  Zixian Su and
                  Guotai Wang and
                  Jianghao Wu and
                  Yanwu Xu and
                  Kai Yao and
                  Li Zhang and
                  S{\'{e}}bastien Ourselin and
                  Jonathan Shapey and
                  Tom Vercauteren},
  title        = {CrossMoDA 2021 challenge: Benchmark of Cross-Modality Domain Adaptation
                  techniques for Vestibular Schwnannoma and Cochlea Segmentation},
  journal      = {CoRR},
  volume       = {abs/2201.02831},
  year         = {2022},
  url          = {https://arxiv.org/abs/2201.02831},
  eprinttype    = {arXiv},
  eprint       = {2201.02831},
  timestamp    = {Thu, 27 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2201-02831.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2202-11486,
  author       = {Mauricio Orbes{-}Arteaga and
                  Thomas Varsavsky and
                  Lauge S{\o}rensen and
                  Mads Nielsen and
                  Akshay Pai and
                  S{\'{e}}bastien Ourselin and
                  Marc Modat and
                  M. Jorge Cardoso},
  title        = {Augmentation based unsupervised domain adaptation},
  journal      = {CoRR},
  volume       = {abs/2202.11486},
  year         = {2022},
  url          = {https://arxiv.org/abs/2202.11486},
  eprinttype    = {arXiv},
  eprint       = {2202.11486},
  timestamp    = {Thu, 03 Mar 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2202-11486.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2203-08041,
  author       = {Samuel Joutard and
                  Thomas S. Pheiffer and
                  Chlo{\'{e}} Audigier and
                  Patrick Wohlfahrt and
                  Reuben Dorent and
                  Sebastien Piat and
                  Tom Vercauteren and
                  Marc Modat and
                  Tommaso Mansi},
  title        = {A multi-organ point cloud registration algorithm for abdominal {CT}
                  registration},
  journal      = {CoRR},
  volume       = {abs/2203.08041},
  year         = {2022},
  url          = {https://doi.org/10.48550/arXiv.2203.08041},
  doi          = {10.48550/ARXIV.2203.08041},
  eprinttype    = {arXiv},
  eprint       = {2203.08041},
  timestamp    = {Mon, 28 Mar 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2203-08041.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2208-03232,
  author       = {Samuel Joutard and
                  Reuben Dorent and
                  S{\'{e}}bastien Ourselin and
                  Tom Vercauteren and
                  Marc Modat},
  title        = {Driving Points Prediction For Abdominal Probabilistic Registration},
  journal      = {CoRR},
  volume       = {abs/2208.03232},
  year         = {2022},
  url          = {https://doi.org/10.48550/arXiv.2208.03232},
  doi          = {10.48550/ARXIV.2208.03232},
  eprinttype    = {arXiv},
  eprint       = {2208.03232},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2208-03232.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2211-02701,
  author       = {M. Jorge Cardoso and
                  Wenqi Li and
                  Richard Brown and
                  Nic Ma and
                  Eric Kerfoot and
                  Yiheng Wang and
                  Benjamin Murray and
                  Andriy Myronenko and
                  Can Zhao and
                  Dong Yang and
                  Vishwesh Nath and
                  Yufan He and
                  Ziyue Xu and
                  Ali Hatamizadeh and
                  Wentao Zhu and
                  Yun Liu and
                  Mingxin Zheng and
                  Yucheng Tang and
                  Isaac Yang and
                  Michael Zephyr and
                  Behrooz Hashemian and
                  Sachidanand Alle and
                  Mohammad Zalbagi Darestani and
                  Charlie Budd and
                  Marc Modat and
                  Tom Vercauteren and
                  Guotai Wang and
                  Yiwen Li and
                  Yipeng Hu and
                  Yunguan Fu and
                  Benjamin Gorman and
                  Hans J. Johnson and
                  Brad W. Genereaux and
                  Barbaros S. Erdal and
                  Vikash Gupta and
                  Andres Diaz{-}Pinto and
                  Andre Dourson and
                  Lena Maier{-}Hein and
                  Paul F. Jaeger and
                  Michael Baumgartner and
                  Jayashree Kalpathy{-}Cramer and
                  Mona Flores and
                  Justin S. Kirby and
                  Lee A. D. Cooper and
                  Holger R. Roth and
                  Daguang Xu and
                  David Bericat and
                  Ralf Floca and
                  S. Kevin Zhou and
                  Haris Shuaib and
                  Keyvan Farahani and
                  Klaus H. Maier{-}Hein and
                  Stephen R. Aylward and
                  Prerna Dogra and
                  S{\'{e}}bastien Ourselin and
                  Andrew Feng},
  title        = {{MONAI:} An open-source framework for deep learning in healthcare},
  journal      = {CoRR},
  volume       = {abs/2211.02701},
  year         = {2022},
  url          = {https://doi.org/10.48550/arXiv.2211.02701},
  doi          = {10.48550/ARXIV.2211.02701},
  eprinttype    = {arXiv},
  eprint       = {2211.02701},
  timestamp    = {Tue, 26 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2211-02701.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/Mehdipour-Ghazi21,
  author       = {Mostafa Mehdipour{-}Ghazi and
                  Mads Nielsen and
                  Akshay Pai and
                  Marc Modat and
                  M. Jorge Cardoso and
                  S{\'{e}}bastien Ourselin and
                  Lauge S{\o}rensen},
  title        = {Robust parametric modeling of Alzheimer's disease progression},
  journal      = {NeuroImage},
  volume       = {225},
  pages        = {117460},
  year         = {2021},
  url          = {https://doi.org/10.1016/j.neuroimage.2020.117460},
  doi          = {10.1016/J.NEUROIMAGE.2020.117460},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/Mehdipour-Ghazi21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/MarkiewiczMACTV21,
  author       = {Pawel J. Markiewicz and
                  Julian C. Matthews and
                  John Ashburner and
                  David M. Cash and
                  David L. Thomas and
                  Enrico De Vita and
                  Anna Barnes and
                  M. Jorge Cardoso and
                  Marc Modat and
                  Richard Brown and
                  Kris Thielemans and
                  Casper O. da Costa{-}Luis and
                  Isadora Lopes Alves and
                  Juan Domingo Gispert and
                  Mark E. Schmidt and
                  Paul Marsden and
                  Alexander Hammers and
                  S{\'{e}}bastien Ourselin and
                  Frederik Barkhof},
  title        = {Uncertainty analysis of {MR-PET} image registration for precision
                  neuro-PET imaging},
  journal      = {NeuroImage},
  volume       = {232},
  pages        = {117821},
  year         = {2021},
  url          = {https://doi.org/10.1016/j.neuroimage.2021.117821},
  doi          = {10.1016/J.NEUROIMAGE.2021.117821},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/MarkiewiczMACTV21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/GrigorescuUCCHB21,
  author       = {Irina Grigorescu and
                  Alena Uus and
                  Daan Christiaens and
                  Lucilio Cordero{-}Grande and
                  Jana Hutter and
                  Dafnis Batalle and
                  A. David Edwards and
                  Joseph V. Hajnal and
                  Marc Modat and
                  Maria Deprez},
  editor       = {Carole H. Sudre and
                  Roxane Licandro and
                  Christian F. Baumgartner and
                  Andrew Melbourne and
                  Adrian V. Dalca and
                  Jana Hutter and
                  Ryutaro Tanno and
                  Esra Abaci Turk and
                  Koen Van Leemput and
                  Jordina Torrents{-}Barrena and
                  William M. Wells III and
                  Christopher K. Macgowan},
  title        = {Uncertainty-Aware Deep Learning Based Deformable Registration},
  booktitle    = {Uncertainty for Safe Utilization of Machine Learning in Medical Imaging,
                  and Perinatal Imaging, Placental and Preterm Image Analysis - 3rd
                  International Workshop, {UNSURE} 2021, and 6th International Workshop,
                  {PIPPI} 2021 Held in Conjunction with {MICCAI} 2021, Strasbourg, France,
                  October 1, 2021, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12959},
  pages        = {54--63},
  publisher    = {Springer},
  year         = {2021},
  url          = {https://doi.org/10.1007/978-3-030-87735-4\_6},
  doi          = {10.1007/978-3-030-87735-4\_6},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/GrigorescuUCCHB21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/DorentJSKMOV21,
  author       = {Reuben Dorent and
                  Samuel Joutard and
                  Jonathan Shapey and
                  Aaron Kujawa and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin and
                  Tom Vercauteren},
  editor       = {Marleen de Bruijne and
                  Philippe C. Cattin and
                  St{\'{e}}phane Cotin and
                  Nicolas Padoy and
                  Stefanie Speidel and
                  Yefeng Zheng and
                  Caroline Essert},
  title        = {Inter Extreme Points Geodesics for End-to-End Weakly Supervised Image
                  Segmentation},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2021 - 24th International Conference, Strasbourg, France, September
                  27 - October 1, 2021, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {12902},
  pages        = {615--624},
  publisher    = {Springer},
  year         = {2021},
  url          = {https://doi.org/10.1007/978-3-030-87196-3\_57},
  doi          = {10.1007/978-3-030-87196-3\_57},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/DorentJSKMOV21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/GroothuisSIBGSP21,
  author       = {Irme Groothuis and
                  Carole H. Sudre and
                  Silvia Ingala and
                  Josephine Barnes and
                  Juan Domingo Gispert and
                  Lauge S{\o}rensen and
                  Akshay Pai and
                  Mads Nielsen and
                  S{\'{e}}bastien Ourselin and
                  M. Jorge Cardoso and
                  Frederik Barkhof and
                  Marc Modat},
  editor       = {Ivana Isgum and
                  Bennett A. Landman},
  title        = {Lesion-wise evaluation for effective performance monitoring of small
                  object segmentation},
  booktitle    = {Medical Imaging 2021: Image Processing, Online, February 15-19, 2021},
  series       = {{SPIE} Proceedings},
  volume       = {11596},
  publisher    = {{SPIE}},
  year         = {2021},
  url          = {https://doi.org/10.1117/12.2580734},
  doi          = {10.1117/12.2580734},
  timestamp    = {Thu, 21 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/GroothuisSIBGSP21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2101-06440,
  author       = {M. Jorge Cardoso and
                  Marc Modat and
                  Tom Vercauteren and
                  S{\'{e}}bastien Ourselin},
  title        = {Scale factor point spread function matching: Beyond aliasing in image
                  resampling},
  journal      = {CoRR},
  volume       = {abs/2101.06440},
  year         = {2021},
  url          = {https://arxiv.org/abs/2101.06440},
  eprinttype    = {arXiv},
  eprint       = {2101.06440},
  timestamp    = {Tue, 26 Jan 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2101-06440.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2103-13314,
  author       = {Marta Bianca Maria Ranzini and
                  Lucas Fidon and
                  S{\'{e}}bastien Ourselin and
                  Marc Modat and
                  Tom Vercauteren},
  title        = {MONAIfbs: MONAI-based fetal brain {MRI} deep learning segmentation},
  journal      = {CoRR},
  volume       = {abs/2103.13314},
  year         = {2021},
  url          = {https://arxiv.org/abs/2103.13314},
  eprinttype    = {arXiv},
  eprint       = {2103.13314},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2103-13314.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2104-08072,
  author       = {Thomas C. Booth and
                  Bernice Akpinar and
                  Andrei Roman and
                  Haris Shuaib and
                  Aysha Luis and
                  Alysha Chelliah and
                  Ayisha Al Busaidi and
                  Ayesha Mirchandani and
                  Burcu Alparslan and
                  Nina Mansoor and
                  Keyoumars Ashkan and
                  S{\'{e}}bastien Ourselin and
                  Marc Modat},
  title        = {Machine Learning and Glioblastoma: Treatment Response Monitoring Biomarkers
                  in 2021},
  journal      = {CoRR},
  volume       = {abs/2104.08072},
  year         = {2021},
  url          = {https://arxiv.org/abs/2104.08072},
  eprinttype    = {arXiv},
  eprint       = {2104.08072},
  timestamp    = {Mon, 19 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2104-08072.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2104-14873,
  author       = {Adri{\`{a}} Casamitjana and
                  Marco Lorenzi and
                  Sebastiano Ferraris and
                  Lo{\"{\i}}c Peter and
                  Marc Modat and
                  Allison Stevens and
                  Bruce Fischl and
                  Tom Vercauteren and
                  Juan Eugenio Iglesias},
  title        = {Robust joint registration of multiple stains and {MRI} for multimodal
                  3D histology reconstruction: Application to the Allen human brain
                  atlas},
  journal      = {CoRR},
  volume       = {abs/2104.14873},
  year         = {2021},
  url          = {https://arxiv.org/abs/2104.14873},
  eprinttype    = {arXiv},
  eprint       = {2104.14873},
  timestamp    = {Thu, 05 Jan 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2104-14873.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2107-00583,
  author       = {Reuben Dorent and
                  Samuel Joutard and
                  Jonathan Shapey and
                  Aaron Kujawa and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin and
                  Tom Vercauteren},
  title        = {Inter Extreme Points Geodesics for Weakly Supervised Segmentation},
  journal      = {CoRR},
  volume       = {abs/2107.00583},
  year         = {2021},
  url          = {https://arxiv.org/abs/2107.00583},
  eprinttype    = {arXiv},
  eprint       = {2107.00583},
  timestamp    = {Wed, 07 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2107-00583.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2112-04489,
  author       = {Alessa Hering and
                  Lasse Hansen and
                  Tony C. W. Mok and
                  Albert C. S. Chung and
                  Hanna Siebert and
                  Stephanie H{\"{a}}ger and
                  Annkristin Lange and
                  Sven Kuckertz and
                  Stefan Heldmann and
                  Wei Shao and
                  Sulaiman Vesal and
                  Mirabela Rusu and
                  Geoffrey A. Sonn and
                  Th{\'{e}}o Estienne and
                  Maria Vakalopoulou and
                  Luyi Han and
                  Yunzhi Huang and
                  Mikael Brudfors and
                  Ya{\"{e}}l Balbastre and
                  Samuel Joutard and
                  Marc Modat and
                  Gal Lifshitz and
                  Dan Raviv and
                  Jinxin Lv and
                  Qiang Li and
                  Vincent Jaouen and
                  Dimitris Visvikis and
                  Constance Fourcade and
                  Mathieu Rubeaux and
                  Wentao Pan and
                  Zhe Xu and
                  Bailiang Jian and
                  Francesca De Benetti and
                  Marek Wodzinski and
                  Niklas Gunnarsson and
                  Huaqi Qiu and
                  Zeju Li and
                  Christoph Gro{\ss}br{\"{o}}hmer and
                  Andrew Hoopes and
                  Ingerid Reinertsen and
                  Yiming Xiao and
                  Bennett A. Landman and
                  Yuankai Huo and
                  Keelin Murphy and
                  Bram van Ginneken and
                  Adrian V. Dalca and
                  Mattias P. Heinrich},
  title        = {Learn2Reg: comprehensive multi-task medical image registration challenge,
                  dataset and evaluation in the era of deep learning},
  journal      = {CoRR},
  volume       = {abs/2112.04489},
  year         = {2021},
  url          = {https://arxiv.org/abs/2112.04489},
  eprinttype    = {arXiv},
  eprint       = {2112.04489},
  timestamp    = {Wed, 15 Dec 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2112-04489.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmpb/RanziniHECIVOHM20,
  author       = {Marta Bianca Maria Ranzini and
                  Johann Henckel and
                  Michael Ebner and
                  M. Jorge Cardoso and
                  Amanda Isaac and
                  Tom Vercauteren and
                  S{\'{e}}bastien Ourselin and
                  Alister Hart and
                  Marc Modat},
  title        = {Automated postoperative muscle assessment of hip arthroplasty patients
                  using multimodal imaging joint segmentation},
  journal      = {Comput. Methods Programs Biomed.},
  volume       = {183},
  year         = {2020},
  url          = {https://doi.org/10.1016/j.cmpb.2019.105062},
  doi          = {10.1016/J.CMPB.2019.105062},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/cmpb/RanziniHECIVOHM20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/MaCZMPWCSHSPLMS20,
  author       = {Da Ma and
                  Manuel Jorge Cardoso and
                  Maria A. Zuluaga and
                  Marc Modat and
                  Nick M. Powell and
                  Frances K. Wiseman and
                  Jon O. Cleary and
                  Benjamin Sinclair and
                  Ian F. Harrison and
                  Bernard Siow and
                  Karteek Popuri and
                  Sieun Lee and
                  Joanne A. Matsubara and
                  Marinko V. Sarunic and
                  Mirza Faisal Beg and
                  Victor L. J. Tybulewicz and
                  Elizabeth M. C. Fisher and
                  Mark F. Lythgoe and
                  S{\'{e}}bastien Ourselin},
  title        = {Substantially thinner internal granular layer and reduced molecular
                  layer surface in the cerebellar cortex of the Tc1 mouse model of down
                  syndrome - a comprehensive morphometric analysis with active staining
                  contrast-enhanced {MRI}},
  journal      = {NeuroImage},
  volume       = {223},
  pages        = {117271},
  year         = {2020},
  url          = {https://doi.org/10.1016/j.neuroimage.2020.117271},
  doi          = {10.1016/J.NEUROIMAGE.2020.117271},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/MaCZMPWCSHSPLMS20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/XiaoMWSKDMRRCFM20,
  author       = {Yiming Xiao and
                  Andreas Maier and
                  Wolfgang Wein and
                  Roozbeh Shams and
                  Samuel Kadoury and
                  David Drobny and
                  Marc Modat and
                  Ingerid Reinertsen and
                  Hassan Rivaz and
                  Matthieu Chabanas and
                  Maryse Fortin and
                  In{\^{e}}s Machado and
                  Yangming Ou and
                  Mattias P. Heinrich and
                  Julia A. Schnabel and
                  Xia Zhong},
  title        = {Evaluation of {MRI} to Ultrasound Registration Methods for Brain Shift
                  Correction: The CuRIOUS2018 Challenge},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {39},
  number       = {3},
  pages        = {777--786},
  year         = {2020},
  url          = {https://doi.org/10.1109/TMI.2019.2935060},
  doi          = {10.1109/TMI.2019.2935060},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/tmi/XiaoMWSKDMRRCFM20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/RanziniGKCHOHM20,
  author       = {Marta Bianca Maria Ranzini and
                  Irme Groothuis and
                  Kerstin Kl{\"{a}}ser and
                  M. Jorge Cardoso and
                  Johann Henckel and
                  S{\'{e}}bastien Ourselin and
                  Alister Hart and
                  Marc Modat},
  title        = {Combining Multimodal Information for Metal Artefact Reduction: An
                  Unsupervised Deep Learning Framework},
  booktitle    = {17th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2020, Iowa City, IA, USA, April 3-7, 2020},
  pages        = {600--604},
  publisher    = {{IEEE}},
  year         = {2020},
  url          = {https://doi.org/10.1109/ISBI45749.2020.9098633},
  doi          = {10.1109/ISBI45749.2020.9098633},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/RanziniGKCHOHM20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/KlaserBSRMATHGC20,
  author       = {Kerstin Kl{\"{a}}ser and
                  Pedro Borges and
                  Richard Shaw and
                  Marta Ranzini and
                  Marc Modat and
                  David Atkinson and
                  Kris Thielemans and
                  Brian F. Hutton and
                  Vicky Goh and
                  Gary J. Cook and
                  M. Jorge Cardoso and
                  S{\'{e}}bastien Ourselin},
  editor       = {Ninon Burgos and
                  David Svoboda and
                  Jelmer M. Wolterink and
                  Can Zhao},
  title        = {Uncertainty-Aware Multi-resolution Whole-Body {MR} to {CT} Synthesis},
  booktitle    = {Simulation and Synthesis in Medical Imaging - 5th International Workshop,
                  {SASHIMI} 2020, Held in Conjunction with {MICCAI} 2020, Lima, Peru,
                  October 4, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12417},
  pages        = {110--119},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-59520-3\_12},
  doi          = {10.1007/978-3-030-59520-3\_12},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/KlaserBSRMATHGC20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/BoothARSLCBMAMA20,
  author       = {Thomas C. Booth and
                  Bernice Akpinar and
                  Andrei Roman and
                  Haris Shuaib and
                  Aysha Luis and
                  Alysha Chelliah and
                  Ayisha Al Busaidi and
                  Ayesha Mirchandani and
                  Burcu Alparslan and
                  Nina Mansoor and
                  Keyoumars Ashkan and
                  S{\'{e}}bastien Ourselin and
                  Marc Modat},
  editor       = {Seyed Mostafa Kia and
                  Hassan Mohy{-}ud{-}Din and
                  Ahmed Abdulkadir and
                  Cher Bass and
                  Mohamad Habes and
                  Jane Maryam Rondina and
                  Chantal M. W. Tax and
                  Hongzhi Wang and
                  Thomas Wolfers and
                  Saima Rathore and
                  Madhura Ingalhalikar},
  title        = {Machine Learning and Glioblastoma: Treatment Response Monitoring Biomarkers
                  in 2021},
  booktitle    = {Machine Learning in Clinical Neuroimaging and Radiogenomics in Neuro-oncology
                  - Third International Workshop, {MLCN} 2020, and Second International
                  Workshop, {RNO-AI} 2020, Held in Conjunction with {MICCAI} 2020, Lima,
                  Peru, October 4-8, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12449},
  pages        = {212--228},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-66843-3\_21},
  doi          = {10.1007/978-3-030-66843-3\_21},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/BoothARSLCBMAMA20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/GrigorescuCBEHM20,
  author       = {Irina Grigorescu and
                  Lucilio Cordero{-}Grande and
                  Dafnis Batalle and
                  A. David Edwards and
                  Joseph V. Hajnal and
                  Marc Modat and
                  Maria Deprez},
  editor       = {Yipeng Hu and
                  Roxane Licandro and
                  J. Alison Noble and
                  Jana Hutter and
                  Stephen R. Aylward and
                  Andrew Melbourne and
                  Esra Abaci Turk and
                  Jordina Torrents{-}Barrena},
  title        = {Harmonised Segmentation of Neonatal Brain {MRI:} {A} Domain Adaptation
                  Approach},
  booktitle    = {Medical Ultrasound, and Preterm, Perinatal and Paediatric Image Analysis
                  - First International Workshop, {ASMUS} 2020, and 5th International
                  Workshop, {PIPPI} 2020, Held in Conjunction with {MICCAI} 2020, Lima,
                  Peru, October 4-8, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12437},
  pages        = {253--263},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-60334-2\_25},
  doi          = {10.1007/978-3-030-60334-2\_25},
  timestamp    = {Wed, 07 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/GrigorescuCBEHM20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/DorentJSBKBSMOV20,
  author       = {Reuben Dorent and
                  Samuel Joutard and
                  Jonathan Shapey and
                  Sotirios Bisdas and
                  Neil Kitchen and
                  Robert Bradford and
                  Shakeel R. Saeed and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin and
                  Tom Vercauteren},
  editor       = {Anne L. Martel and
                  Purang Abolmaesumi and
                  Danail Stoyanov and
                  Diana Mateus and
                  Maria A. Zuluaga and
                  S. Kevin Zhou and
                  Daniel Racoceanu and
                  Leo Joskowicz},
  title        = {Scribble-Based Domain Adaptation via Co-segmentation},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020,
                  Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {12261},
  pages        = {479--489},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-59710-8\_47},
  doi          = {10.1007/978-3-030-59710-8\_47},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/DorentJSBKBSMOV20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wbir/DrobnyRIVOCM20,
  author       = {David Drobny and
                  Marta Ranzini and
                  Amanda Isaac and
                  Tom Vercauteren and
                  S{\'{e}}bastien Ourselin and
                  David Choi and
                  Marc Modat},
  editor       = {Ziga Spiclin and
                  Jamie McClelland and
                  Jan Kybic and
                  Orcun Goksel},
  title        = {Towards Automated Spine Mobility Quantification: {A} Locally Rigid
                  {CT} to X-ray Registration Framework},
  booktitle    = {Biomedical Image Registration - 9th International Workshop, {WBIR}
                  2020, Portoro{\v{z}}, Slovenia, December 1-2, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12120},
  pages        = {67--77},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-50120-4\_7},
  doi          = {10.1007/978-3-030-50120-4\_7},
  timestamp    = {Wed, 15 Jul 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/wbir/DrobnyRIVOCM20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wbir/GrigorescuUCCHE20,
  author       = {Irina Grigorescu and
                  Alena Uus and
                  Daan Christiaens and
                  Lucilio Cordero{-}Grande and
                  Jana Hutter and
                  A. David Edwards and
                  Joseph V. Hajnal and
                  Marc Modat and
                  Maria Deprez},
  editor       = {Ziga Spiclin and
                  Jamie McClelland and
                  Jan Kybic and
                  Orcun Goksel},
  title        = {Diffusion Tensor Driven Image Registration: {A} Deep Learning Approach},
  booktitle    = {Biomedical Image Registration - 9th International Workshop, {WBIR}
                  2020, Portoro{\v{z}}, Slovenia, December 1-2, 2020, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {12120},
  pages        = {131--140},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-50120-4\_13},
  doi          = {10.1007/978-3-030-50120-4\_13},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/wbir/GrigorescuUCCHE20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2004-09321,
  author       = {Marta Bianca Maria Ranzini and
                  Irme Groothuis and
                  Kerstin Kl{\"{a}}ser and
                  M. Jorge Cardoso and
                  Johann Henckel and
                  S{\'{e}}bastien Ourselin and
                  Alister Hart and
                  Marc Modat},
  title        = {Combining multimodal information for Metal Artefact Reduction: An
                  unsupervised deep learning framework},
  journal      = {CoRR},
  volume       = {abs/2004.09321},
  year         = {2020},
  url          = {https://arxiv.org/abs/2004.09321},
  eprinttype    = {arXiv},
  eprint       = {2004.09321},
  timestamp    = {Wed, 22 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2004-09321.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2007-03632,
  author       = {Reuben Dorent and
                  Samuel Joutard and
                  Jonathan Shapey and
                  Sotirios Bisdas and
                  Neil Kitchen and
                  Robert Bradford and
                  Shakeel R. Saeed and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin and
                  Tom Vercauteren},
  title        = {Scribble-based Domain Adaptation via Co-segmentation},
  journal      = {CoRR},
  volume       = {abs/2007.03632},
  year         = {2020},
  url          = {https://arxiv.org/abs/2007.03632},
  eprinttype    = {arXiv},
  eprint       = {2007.03632},
  timestamp    = {Mon, 26 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2007-03632.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2011-00867,
  author       = {Benjamin Murray and
                  Eric Kerfoot and
                  Mark S. Graham and
                  Carole H. Sudre and
                  Erika Molteni and
                  Liane S. Canas and
                  Michela Antonelli and
                  Alessia Visconti and
                  Andrew T. Chan and
                  Paul W. Franks and
                  Richard Davies and
                  Jonathan Wolf and
                  Tim D. Spector and
                  Claire J. Steves and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin},
  title        = {Accessible Data Curation and Analytics for International-Scale Citizen
                  Science Datasets},
  journal      = {CoRR},
  volume       = {abs/2011.00867},
  year         = {2020},
  url          = {https://arxiv.org/abs/2011.00867},
  eprinttype    = {arXiv},
  eprint       = {2011.00867},
  timestamp    = {Fri, 06 Nov 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2011-00867.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/AntonelliCJAPMP19,
  author       = {Michela Antonelli and
                  M. Jorge Cardoso and
                  Edward W. Johnston and
                  Mrishta Brizmohun Appayya and
                  Beno{\^{\i}}t Presles and
                  Marc Modat and
                  Shonit Punwani and
                  S{\'{e}}bastien Ourselin},
  title        = {{GAS:} {A} genetic atlas selection strategy in multi-atlas segmentation
                  framework},
  journal      = {Medical Image Anal.},
  volume       = {52},
  pages        = {97--108},
  year         = {2019},
  url          = {https://doi.org/10.1016/j.media.2018.11.007},
  doi          = {10.1016/J.MEDIA.2018.11.007},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/AntonelliCJAPMP19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/Mehdipour-Ghazi19,
  author       = {Mostafa Mehdipour{-}Ghazi and
                  Mads Nielsen and
                  Akshay Pai and
                  M. Jorge Cardoso and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin and
                  Lauge S{\o}rensen},
  title        = {Training recurrent neural networks robust to incomplete data: Application
                  to Alzheimer's disease progression modeling},
  journal      = {Medical Image Anal.},
  volume       = {53},
  pages        = {39--46},
  year         = {2019},
  url          = {https://doi.org/10.1016/j.media.2019.01.004},
  doi          = {10.1016/J.MEDIA.2019.01.004},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/Mehdipour-Ghazi19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/MolteniCBGCMS19,
  author       = {Erika Molteni and
                  Katia Colombo and
                  Elena Beretta and
                  Susanna Galbiati and
                  Liane Dos Santos Canas and
                  Marc Modat and
                  Sandra Strazzer},
  title        = {Comparison of Multi-class Machine Learning Methods for the Identification
                  of Factors Most Predictive of Prognosis in Neurobehavioral assessment
                  of Pediatric Severe Disorder of Consciousness through {LOCFAS} scale},
  booktitle    = {41st Annual International Conference of the {IEEE} Engineering in
                  Medicine and Biology Society, {EMBC} 2019, Berlin, Germany, July 23-27,
                  2019},
  pages        = {269--272},
  publisher    = {{IEEE}},
  year         = {2019},
  url          = {https://doi.org/10.1109/EMBC.2019.8856880},
  doi          = {10.1109/EMBC.2019.8856880},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/embc/MolteniCBGCMS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iconip/Mehdipour-Ghazi19,
  author       = {Mostafa Mehdipour{-}Ghazi and
                  Mads Nielsen and
                  Akshay Pai and
                  Marc Modat and
                  M. Jorge Cardoso and
                  S{\'{e}}bastien Ourselin and
                  Lauge S{\o}rensen},
  editor       = {Tom Gedeon and
                  Kok Wai Wong and
                  Minho Lee},
  title        = {On the Initialization of Long Short-Term Memory Networks},
  booktitle    = {Neural Information Processing - 26th International Conference, {ICONIP}
                  2019, Sydney, NSW, Australia, December 12-15, 2019, Proceedings, Part
                  {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {11953},
  pages        = {275--286},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://doi.org/10.1007/978-3-030-36708-4\_23},
  doi          = {10.1007/978-3-030-36708-4\_23},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/iconip/Mehdipour-Ghazi19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/Orbes-ArteagaVS19,
  author       = {Mauricio Orbes{-}Arteaga and
                  Thomas Varsavsky and
                  Carole H. Sudre and
                  Zach Eaton{-}Rosen and
                  Lewis J. Haddow and
                  Lauge S{\o}rensen and
                  Mads Nielsen and
                  Akshay Pai and
                  S{\'{e}}bastien Ourselin and
                  Marc Modat and
                  Parashkev Nachev and
                  M. Jorge Cardoso},
  editor       = {Qian Wang and
                  Fausto Milletari and
                  Hien Van Nguyen and
                  Shadi Albarqouni and
                  M. Jorge Cardoso and
                  Nicola Rieke and
                  Ziyue Xu and
                  Konstantinos Kamnitsas and
                  Vishal Patel and
                  Badri Roysam and
                  Steve B. Jiang and
                  S. Kevin Zhou and
                  Khoa Luu and
                  Ngan Le},
  title        = {Multi-domain Adaptation in Brain {MRI} Through Paired Consistency
                  and Adversarial Learning},
  booktitle    = {Domain Adaptation and Representation Transfer and Medical Image Learning
                  with Less Labels and Imperfect Data - First {MICCAI} Workshop, {DART}
                  2019, and First International Workshop, {MIL3ID} 2019, Shenzhen, Held
                  in Conjunction with {MICCAI} 2019, Shenzhen, China, October 13 and
                  17, 2019, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11795},
  pages        = {54--62},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://doi.org/10.1007/978-3-030-33391-1\_7},
  doi          = {10.1007/978-3-030-33391-1\_7},
  timestamp    = {Thu, 04 May 2023 17:10:57 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/Orbes-ArteagaVS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/Orbes-Arteainst19,
  author       = {Mauricio Orbes{-}Arteaga and
                  M. Jorge Cardoso and
                  Lauge S{\o}rensen and
                  Christian Igel and
                  S{\'{e}}bastien Ourselin and
                  Marc Modat and
                  Mads Nielsen and
                  Akshay Pai},
  editor       = {Luping Zhou and
                  Duygu Sarikaya and
                  Seyed Mostafa Kia and
                  Stefanie Speidel and
                  Anand Malpani and
                  Daniel A. Hashimoto and
                  Mohamad Habes and
                  Tommy L{\"{o}}fstedt and
                  Kerstin Ritter and
                  Hongzhi Wang},
  title        = {Knowledge Distillation for Semi-supervised Domain Adaptation},
  booktitle    = {{OR} 2.0 Context-Aware Operating Theaters and Machine Learning in
                  Clinical Neuroimaging - Second International Workshop, {OR} 2.0 2019,
                  and Second International Workshop, {MLCN} 2019, Held in Conjunction
                  with {MICCAI} 2019, Shenzhen, China, October 13 and 17, 2019, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11796},
  pages        = {68--76},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://doi.org/10.1007/978-3-030-32695-1\_8},
  doi          = {10.1007/978-3-030-32695-1\_8},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/Orbes-Arteainst19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/DorentJMOV19,
  author       = {Reuben Dorent and
                  Samuel Joutard and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin and
                  Tom Vercauteren},
  editor       = {Dinggang Shen and
                  Tianming Liu and
                  Terry M. Peters and
                  Lawrence H. Staib and
                  Caroline Essert and
                  Sean Zhou and
                  Pew{-}Thian Yap and
                  Ali R. Khan},
  title        = {Hetero-Modal Variational Encoder-Decoder for Joint Modality Completion
                  and Segmentation},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2019 - 22nd International Conference, Shenzhen, China, October 13-17,
                  2019, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {11765},
  pages        = {74--82},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://doi.org/10.1007/978-3-030-32245-8\_9},
  doi          = {10.1007/978-3-030-32245-8\_9},
  timestamp    = {Mon, 19 Feb 2024 14:24:13 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/DorentJMOV19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/GrigorescuCEHMD19,
  author       = {Irina Grigorescu and
                  Lucilio Cordero{-}Grande and
                  A. David Edwards and
                  Joseph V. Hajnal and
                  Marc Modat and
                  Maria Deprez},
  editor       = {Qian Wang and
                  Alberto G{\'{o}}mez and
                  Jana Hutter and
                  Kristin McLeod and
                  Veronika A. M. Zimmer and
                  Oliver Zettinig and
                  Roxane Licandro and
                  Emma C. Robinson and
                  Daan Christiaens and
                  Esra Abaci Turk and
                  Andrew Melbourne},
  title        = {Investigating Image Registration Impact on Preterm Birth Classification:
                  An Interpretable Deep Learning Approach},
  booktitle    = {Smart Ultrasound Imaging and Perinatal, Preterm and Paediatric Image
                  Analysis - First International Workshop, {SUSI} 2019, and 4th International
                  Workshop, {PIPPI} 2019, Held in Conjunction with {MICCAI} 2019, Shenzhen,
                  China, October 13 and 17, 2019, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11798},
  pages        = {104--112},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://doi.org/10.1007/978-3-030-32875-7\_12},
  doi          = {10.1007/978-3-030-32875-7\_12},
  timestamp    = {Mon, 22 Jun 2020 17:43:02 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/GrigorescuCEHMD19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/DrobnyROVM19,
  author       = {David Drobny and
                  Marta Ranzini and
                  S{\'{e}}bastien Ourselin and
                  Tom Vercauteren and
                  Marc Modat},
  editor       = {Luping Zhou and
                  Nicholas Heller and
                  Yiyu Shi and
                  Yiming Xiao and
                  Raphael Sznitman and
                  Veronika Cheplygina and
                  Diana Mateus and
                  Emanuele Trucco and
                  Xiaobo Sharon Hu and
                  Danny Ziyi Chen and
                  Matthieu Chabanas and
                  Hassan Rivaz and
                  Ingerid Reinertsen},
  title        = {Landmark-Based Evaluation of a Block-Matching Registration Framework
                  on the {RESECT} Pre- and Intra-operative Brain Image Data Set},
  booktitle    = {Large-Scale Annotation of Biomedical Data and Expert Label Synthesis
                  and Hardware Aware Learning for Medical Imaging and Computer Assisted
                  Intervention - International Workshops, {LABELS} 2019, {HAL-MICCAI}
                  2019, and CuRIOUS 2019, Held in Conjunction with {MICCAI} 2019, Shenzhen,
                  China, October 13 and 17, 2019, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11851},
  pages        = {136--144},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://doi.org/10.1007/978-3-030-33642-4\_15},
  doi          = {10.1007/978-3-030-33642-4\_15},
  timestamp    = {Tue, 13 Dec 2022 14:39:05 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/DrobnyROVM19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/JoutardDIOVM19,
  author       = {Samuel Joutard and
                  Reuben Dorent and
                  Amanda Isaac and
                  S{\'{e}}bastien Ourselin and
                  Tom Vercauteren and
                  Marc Modat},
  editor       = {Dinggang Shen and
                  Tianming Liu and
                  Terry M. Peters and
                  Lawrence H. Staib and
                  Caroline Essert and
                  Sean Zhou and
                  Pew{-}Thian Yap and
                  Ali R. Khan},
  title        = {Permutohedral Attention Module for Efficient Non-local Neural Networks},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2019 - 22nd International Conference, Shenzhen, China, October 13-17,
                  2019, Proceedings, Part {VI}},
  series       = {Lecture Notes in Computer Science},
  volume       = {11769},
  pages        = {393--401},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://doi.org/10.1007/978-3-030-32226-7\_44},
  doi          = {10.1007/978-3-030-32226-7\_44},
  timestamp    = {Mon, 19 Feb 2024 14:24:13 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/JoutardDIOVM19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/FidonEGMOV19,
  author       = {Lucas Fidon and
                  Michael Ebner and
                  Luis C. Garc{\'{\i}}a{-}Peraza{-}Herrera and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin and
                  Tom Vercauteren},
  editor       = {Dinggang Shen and
                  Tianming Liu and
                  Terry M. Peters and
                  Lawrence H. Staib and
                  Caroline Essert and
                  Sean Zhou and
                  Pew{-}Thian Yap and
                  Ali R. Khan},
  title        = {Incompressible Image Registration Using Divergence-Conforming B-Splines},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2019 - 22nd International Conference, Shenzhen, China, October 13-17,
                  2019, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {11765},
  pages        = {438--446},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://doi.org/10.1007/978-3-030-32245-8\_49},
  doi          = {10.1007/978-3-030-32245-8\_49},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/FidonEGMOV19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/Orbes-ArtegaSCM19,
  author       = {Mauricio Orbes{-}Arteaga and
                  Lauge S{\o}rensen and
                  Manuel Jorge Cardoso and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin and
                  Stefan Sommer and
                  Mads Nielsen and
                  Christian Igel and
                  Akshay Pai},
  editor       = {Elsa D. Angelini and
                  Bennett A. Landman},
  title        = {{PADDIT:} Probabilistic Augmentation of Data using Diffeomorphic Image
                  Transformation},
  booktitle    = {Medical Imaging 2019: Image Processing, San Diego, California, United
                  States, 16-21 February 2019},
  series       = {{SPIE} Proceedings},
  volume       = {10949},
  pages        = {109490S},
  publisher    = {{SPIE}},
  year         = {2019},
  url          = {https://doi.org/10.1117/12.2512520},
  doi          = {10.1117/12.2512520},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/Orbes-ArtegaSCM19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1901-02499,
  author       = {Da Ma and
                  Manuel Jorge Cardoso and
                  Maria A. Zuluaga and
                  Marc Modat and
                  Nick M. Powell and
                  Frances K. Wiseman and
                  Victor L. J. Tybulewicz and
                  Elizabeth M. C. Fisher and
                  Mark F. Lythgoe and
                  S{\'{e}}bastien Ourselin},
  title        = {Grey matter sublayer thickness estimation in themouse cerebellum},
  journal      = {CoRR},
  volume       = {abs/1901.02499},
  year         = {2019},
  url          = {http://arxiv.org/abs/1901.02499},
  eprinttype    = {arXiv},
  eprint       = {1901.02499},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1901-02499.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1903-07173,
  author       = {Mostafa Mehdipour{-}Ghazi and
                  Mads Nielsen and
                  Akshay Pai and
                  M. Jorge Cardoso and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin and
                  Lauge S{\o}rensen},
  title        = {Training recurrent neural networks robust to incomplete data: application
                  to Alzheimer's disease progression modeling},
  journal      = {CoRR},
  volume       = {abs/1903.07173},
  year         = {2019},
  url          = {http://arxiv.org/abs/1903.07173},
  eprinttype    = {arXiv},
  eprint       = {1903.07173},
  timestamp    = {Mon, 01 Apr 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1903-07173.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1907-00641,
  author       = {Samuel Joutard and
                  Reuben Dorent and
                  Amanda Isaac and
                  S{\'{e}}bastien Ourselin and
                  Tom Vercauteren and
                  Marc Modat},
  title        = {Permutohedral Attention Module for Efficient Non-Local Neural Networks},
  journal      = {CoRR},
  volume       = {abs/1907.00641},
  year         = {2019},
  url          = {http://arxiv.org/abs/1907.00641},
  eprinttype    = {arXiv},
  eprint       = {1907.00641},
  timestamp    = {Mon, 08 Jul 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1907-00641.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1907-11150,
  author       = {Reuben Dorent and
                  Samuel Joutard and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin and
                  Tom Vercauteren},
  title        = {Hetero-Modal Variational Encoder-Decoder for Joint Modality Completion
                  and Segmentation},
  journal      = {CoRR},
  volume       = {abs/1907.11150},
  year         = {2019},
  url          = {http://arxiv.org/abs/1907.11150},
  eprinttype    = {arXiv},
  eprint       = {1907.11150},
  timestamp    = {Tue, 30 Jul 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1907-11150.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1908-05338,
  author       = {Mostafa Mehdipour{-}Ghazi and
                  Mads Nielsen and
                  Akshay Pai and
                  Marc Modat and
                  M. Jorge Cardoso and
                  S{\'{e}}bastien Ourselin and
                  Lauge S{\o}rensen},
  title        = {Robust parametric modeling of Alzheimer's disease progression},
  journal      = {CoRR},
  volume       = {abs/1908.05338},
  year         = {2019},
  url          = {http://arxiv.org/abs/1908.05338},
  eprinttype    = {arXiv},
  eprint       = {1908.05338},
  timestamp    = {Sat, 23 Jan 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1908-05338.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1908-05959,
  author       = {Mauricio Orbes{-}Arteaga and
                  Thomas Varsavsky and
                  Carole H. Sudre and
                  Zach Eaton{-}Rosen and
                  Lewis J. Haddow and
                  Lauge S{\o}rensen and
                  Mads Nielsen and
                  Akshay Pai and
                  S{\'{e}}bastien Ourselin and
                  Marc Modat and
                  Parashkev Nachev and
                  Manuel Jorge Cardoso},
  title        = {Multi-Domain Adaptation in Brain {MRI} through Paired Consistency
                  and Adversarial Learning},
  journal      = {CoRR},
  volume       = {abs/1908.05959},
  year         = {2019},
  url          = {http://arxiv.org/abs/1908.05959},
  eprinttype    = {arXiv},
  eprint       = {1908.05959},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1908-05959.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1908-07355,
  author       = {Mauricio Orbes{-}Arteaga and
                  M. Jorge Cardoso and
                  Lauge S{\o}rensen and
                  Christian Igel and
                  S{\'{e}}bastien Ourselin and
                  Marc Modat and
                  Mads Nielsen and
                  Akshay Pai},
  title        = {Knowledge distillation for semi-supervised domain adaptation},
  journal      = {CoRR},
  volume       = {abs/1908.07355},
  year         = {2019},
  url          = {http://arxiv.org/abs/1908.07355},
  eprinttype    = {arXiv},
  eprint       = {1908.07355},
  timestamp    = {Sat, 23 Jan 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1908-07355.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1912-10454,
  author       = {Mostafa Mehdipour{-}Ghazi and
                  Mads Nielsen and
                  Akshay Pai and
                  Marc Modat and
                  M. Jorge Cardoso and
                  S{\'{e}}bastien Ourselin and
                  Lauge S{\o}rensen},
  title        = {On the Initialization of Long Short-Term Memory Networks},
  journal      = {CoRR},
  volume       = {abs/1912.10454},
  year         = {2019},
  url          = {http://arxiv.org/abs/1912.10454},
  eprinttype    = {arXiv},
  eprint       = {1912.10454},
  timestamp    = {Fri, 03 Jan 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1912-10454.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmpb/GibsonLSFSWEGDH18,
  author       = {Eli Gibson and
                  Wenqi Li and
                  Carole H. Sudre and
                  Lucas Fidon and
                  Dzhoshkun I. Shakir and
                  Guotai Wang and
                  Zach Eaton{-}Rosen and
                  Robert J. Gray and
                  Tom Doel and
                  Yipeng Hu and
                  Tom Whyntie and
                  Parashkev Nachev and
                  Marc Modat and
                  Dean C. Barratt and
                  S{\'{e}}bastien Ourselin and
                  M. Jorge Cardoso and
                  Tom Vercauteren},
  title        = {NiftyNet: a deep-learning platform for medical imaging},
  journal      = {Comput. Methods Programs Biomed.},
  volume       = {158},
  pages        = {113--122},
  year         = {2018},
  url          = {https://doi.org/10.1016/j.cmpb.2018.01.025},
  doi          = {10.1016/J.CMPB.2018.01.025},
  timestamp    = {Mon, 19 Sep 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cmpb/GibsonLSFSWEGDH18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/PichatIYOM18,
  author       = {Jonas Pichat and
                  Juan Eugenio Iglesias and
                  Tarek A. Yousry and
                  S{\'{e}}bastien Ourselin and
                  Marc Modat},
  title        = {A Survey of Methods for 3D Histology Reconstruction},
  journal      = {Medical Image Anal.},
  volume       = {46},
  pages        = {73--105},
  year         = {2018},
  url          = {https://doi.org/10.1016/j.media.2018.02.004},
  doi          = {10.1016/J.MEDIA.2018.02.004},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/PichatIYOM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/HuMGLGBWBMEONBV18,
  author       = {Yipeng Hu and
                  Marc Modat and
                  Eli Gibson and
                  Wenqi Li and
                  Nooshin Ghavami and
                  Ester Bonmati and
                  Guotai Wang and
                  Steven Bandula and
                  Caroline M. Moore and
                  Mark Emberton and
                  S{\'{e}}bastien Ourselin and
                  J. Alison Noble and
                  Dean C. Barratt and
                  Tom Vercauteren},
  title        = {Weakly-supervised convolutional neural networks for multimodal image
                  registration},
  journal      = {Medical Image Anal.},
  volume       = {49},
  pages        = {1--13},
  year         = {2018},
  url          = {https://doi.org/10.1016/j.media.2018.07.002},
  doi          = {10.1016/J.MEDIA.2018.07.002},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/HuMGLGBWBMEONBV18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/IglesiasMPSAVLF18,
  author       = {Juan Eugenio Iglesias and
                  Marc Modat and
                  Lo{\"{\i}}c Peter and
                  Allison Stevens and
                  Roberto Annunziata and
                  Tom Vercauteren and
                  Ed S. Lein and
                  Bruce Fischl and
                  S{\'{e}}bastien Ourselin},
  title        = {Joint registration and synthesis using a probabilistic model for alignment
                  of {MRI} and histological sections},
  journal      = {Medical Image Anal.},
  volume       = {50},
  pages        = {127--144},
  year         = {2018},
  url          = {https://doi.org/10.1016/j.media.2018.09.002},
  doi          = {10.1016/J.MEDIA.2018.09.002},
  timestamp    = {Mon, 08 Apr 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/IglesiasMPSAVLF18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/FerrarisMVPIMLM18,
  author       = {Sebastiano Ferraris and
                  Johannes L. van der Merwe and
                  Lennart Van Der Veeken and
                  Ferran Prados and
                  Juan Eugenio Iglesias and
                  Andrew Melbourne and
                  Marco Lorenzi and
                  Marc Modat and
                  Willy Gsell and
                  Jan Deprest and
                  Tom Vercauteren},
  title        = {A magnetic resonance multi-atlas for the neonatal rabbit brain},
  journal      = {NeuroImage},
  volume       = {179},
  pages        = {187--198},
  year         = {2018},
  url          = {https://doi.org/10.1016/j.neuroimage.2018.06.029},
  doi          = {10.1016/J.NEUROIMAGE.2018.06.029},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/FerrarisMVPIMLM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/EbnerMFOV18,
  author       = {Michael Ebner and
                  Marc Modat and
                  Sebastiano Ferraris and
                  S{\'{e}}bastien Ourselin and
                  Tom Vercauteren},
  title        = {Forward-backward splitting in deformable image registration: {A} demons
                  approach},
  booktitle    = {15th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2018, Washington, DC, USA, April 4-7, 2018},
  pages        = {1065--1069},
  publisher    = {{IEEE}},
  year         = {2018},
  url          = {https://doi.org/10.1109/ISBI.2018.8363755},
  doi          = {10.1109/ISBI.2018.8363755},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/EbnerMFOV18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/HuMGGBMENBV18,
  author       = {Yipeng Hu and
                  Marc Modat and
                  Eli Gibson and
                  Nooshin Ghavami and
                  Ester Bonmati and
                  Caroline M. Moore and
                  Mark Emberton and
                  J. Alison Noble and
                  Dean C. Barratt and
                  Tom Vercauteren},
  title        = {Label-driven weakly-supervised learning for multimodal deformarle
                  image registration},
  booktitle    = {15th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2018, Washington, DC, USA, April 4-7, 2018},
  pages        = {1070--1074},
  publisher    = {{IEEE}},
  year         = {2018},
  url          = {https://doi.org/10.1109/ISBI.2018.8363756},
  doi          = {10.1109/ISBI.2018.8363756},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/isbi/HuMGGBMENBV18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/micad/CanasYCMVBOMM18,
  author       = {Liane S. Canas and
                  Benjamin C. Yvernault and
                  David M. Cash and
                  Erika Molteni and
                  Tom Veale and
                  Tammie L. S. Benzinger and
                  S{\'{e}}bastien Ourselin and
                  Simon Mead and
                  Marc Modat},
  editor       = {Nicholas A. Petrick and
                  Kensaku Mori},
  title        = {Gaussian Processes with optimal kernel construction for neuro-degenerative
                  clinical onset prediction},
  booktitle    = {Medical Imaging 2018: Computer-Aided Diagnosis, Houston, Texas, USA,
                  10-15 February 2018},
  series       = {{SPIE} Proceedings},
  volume       = {10575},
  pages        = {105750G},
  publisher    = {{SPIE}},
  year         = {2018},
  url          = {https://doi.org/10.1117/12.2293242},
  doi          = {10.1117/12.2293242},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/micad/CanasYCMVBOMM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/KlaserMRLMHATCO18,
  author       = {Kerstin Kl{\"{a}}ser and
                  Pawel Markiewicz and
                  Marta Bianca Maria Ranzini and
                  Wenqi Li and
                  Marc Modat and
                  Brian F. Hutton and
                  David Atkinson and
                  Kris Thielemans and
                  M. Jorge Cardoso and
                  S{\'{e}}bastien Ourselin},
  editor       = {Ali Gooya and
                  Orcun Goksel and
                  Ipek Oguz and
                  Ninon Burgos},
  title        = {Deep Boosted Regression for {MR} to {CT} Synthesis},
  booktitle    = {Simulation and Synthesis in Medical Imaging - Third International
                  Workshop, {SASHIMI} 2018, Held in Conjunction with {MICCAI} 2018,
                  Granada, Spain, September 16, 2018, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11037},
  pages        = {61--70},
  publisher    = {Springer},
  year         = {2018},
  url          = {https://doi.org/10.1007/978-3-030-00536-8\_7},
  doi          = {10.1007/978-3-030-00536-8\_7},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/KlaserMRLMHATCO18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/IglesiasLFPMSFV18,
  author       = {Juan Eugenio Iglesias and
                  Marco Lorenzi and
                  Sebastiano Ferraris and
                  Lo{\"{\i}}c Peter and
                  Marc Modat and
                  Allison Stevens and
                  Bruce Fischl and
                  Tom Vercauteren},
  editor       = {Alejandro F. Frangi and
                  Julia A. Schnabel and
                  Christos Davatzikos and
                  Carlos Alberola{-}L{\'{o}}pez and
                  Gabor Fichtinger},
  title        = {Model-Based Refinement of Nonlinear Registrations in 3D Histology
                  Reconstruction},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2018 - 21st International Conference, Granada, Spain, September 16-20,
                  2018, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {11071},
  pages        = {147--155},
  publisher    = {Springer},
  year         = {2018},
  url          = {https://doi.org/10.1007/978-3-030-00934-2\_17},
  doi          = {10.1007/978-3-030-00934-2\_17},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/IglesiasLFPMSFV18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/DrobnyVOM18,
  author       = {David Drobny and
                  Tom Vercauteren and
                  S{\'{e}}bastien Ourselin and
                  Marc Modat},
  editor       = {Danail Stoyanov and
                  Zeike Taylor and
                  Stephen R. Aylward and
                  Jo{\~{a}}o Manuel R. S. Tavares and
                  Yiming Xiao and
                  Amber L. Simpson and
                  Anne L. Martel and
                  Lena Maier{-}Hein and
                  Shuo Li and
                  Hassan Rivaz and
                  Ingerid Reinertsen and
                  Matthieu Chabanas and
                  Keyvan Farahani},
  title        = {Registration of {MRI} and iUS Data to Compensate Brain Shift Using
                  a Symmetric Block-Matching Based Approach},
  booktitle    = {Simulation, Image Processing, and Ultrasound Systems for Assisted
                  Diagnosis and Navigation - International Workshops, {POCUS} 2018,
                  {BIVPCS} 2018, CuRIOUS 2018, and {CPM} 2018, Held in Conjunction with
                  {MICCAI} 2018, Granada, Spain, September 16-20, 2018, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11042},
  pages        = {172--178},
  publisher    = {Springer},
  year         = {2018},
  url          = {https://doi.org/10.1007/978-3-030-01045-4\_21},
  doi          = {10.1007/978-3-030-01045-4\_21},
  timestamp    = {Sun, 02 Jun 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/DrobnyVOM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/GeorgiadisYHRSS18,
  author       = {Konstantinos Georgiadis and
                  Alexandra L. Young and
                  Michael H{\"{u}}tel and
                  Adeel Razi and
                  Carla Semedo and
                  Jonathan M. Schott and
                  S{\'{e}}bastien Ourselin and
                  Jason D. Warren and
                  Marc Modat},
  editor       = {Alejandro F. Frangi and
                  Julia A. Schnabel and
                  Christos Davatzikos and
                  Carlos Alberola{-}L{\'{o}}pez and
                  Gabor Fichtinger},
  title        = {Computational Modelling of Pathogenic Protein Behaviour-Governing
                  Mechanisms in the Brain},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2018 - 21st International Conference, Granada, Spain, September 16-20,
                  2018, Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {11072},
  pages        = {532--539},
  publisher    = {Springer},
  year         = {2018},
  url          = {https://doi.org/10.1007/978-3-030-00931-1\_61},
  doi          = {10.1007/978-3-030-00931-1\_61},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/GeorgiadisYHRSS18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/CanasYSVCTBOMM18,
  author       = {Liane S. Canas and
                  Benjamin C. Yvernault and
                  Carole H. Sudre and
                  Enrico De Vita and
                  M. Jorge Cardoso and
                  John S. Thornton and
                  Frederik Barkhof and
                  S{\'{e}}bastien Ourselin and
                  Simon Mead and
                  Marc Modat},
  editor       = {Elsa D. Angelini and
                  Bennett A. Landman},
  title        = {Imaging biomarkers for the diagnosis of Prion disease},
  booktitle    = {Medical Imaging 2018: Image Processing, Houston, Texas, United States,
                  10-15 February 2018},
  series       = {{SPIE} Proceedings},
  volume       = {10574},
  pages        = {1057405},
  publisher    = {{SPIE}},
  year         = {2018},
  url          = {https://doi.org/10.1117/12.2293676},
  doi          = {10.1117/12.2293676},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/CanasYSVCTBOMM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1801-05284,
  author       = {Juan Eugenio Iglesias and
                  Marc Modat and
                  Lo{\"{\i}}c Peter and
                  Allison Stevens and
                  Roberto Annunziata and
                  Tom Vercauteren and
                  Ed S. Lein and
                  Bruce Fischl and
                  S{\'{e}}bastien Ourselin},
  title        = {Joint registration and synthesis using a probabilistic model for alignment
                  of {MRI} and histological sections},
  journal      = {CoRR},
  volume       = {abs/1801.05284},
  year         = {2018},
  url          = {http://arxiv.org/abs/1801.05284},
  eprinttype    = {arXiv},
  eprint       = {1801.05284},
  timestamp    = {Mon, 08 Apr 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1801-05284.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1807-03361,
  author       = {Yipeng Hu and
                  Marc Modat and
                  Eli Gibson and
                  Wenqi Li and
                  Nooshin Ghavami and
                  Ester Bonmati and
                  Guotai Wang and
                  Steven Bandula and
                  Caroline M. Moore and
                  Mark Emberton and
                  S{\'{e}}bastien Ourselin and
                  J. Alison Noble and
                  Dean C. Barratt and
                  Tom Vercauteren},
  title        = {Weakly-Supervised Convolutional Neural Networks for Multimodal Image
                  Registration},
  journal      = {CoRR},
  volume       = {abs/1807.03361},
  year         = {2018},
  url          = {http://arxiv.org/abs/1807.03361},
  eprinttype    = {arXiv},
  eprint       = {1807.03361},
  timestamp    = {Fri, 11 Feb 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1807-03361.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1808-05500,
  author       = {Mostafa Mehdipour{-}Ghazi and
                  Mads Nielsen and
                  Akshay Pai and
                  M. Jorge Cardoso and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin and
                  Lauge S{\o}rensen},
  title        = {Robust training of recurrent neural networks to handle missing data
                  for disease progression modeling},
  journal      = {CoRR},
  volume       = {abs/1808.05500},
  year         = {2018},
  url          = {http://arxiv.org/abs/1808.05500},
  eprinttype    = {arXiv},
  eprint       = {1808.05500},
  timestamp    = {Sat, 23 Jan 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1808-05500.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1808-06519,
  author       = {Mauricio Orbes{-}Arteaga and
                  M. Jorge Cardoso and
                  Lauge S{\o}rensen and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin and
                  Mads Nielsen and
                  Akshay Pai},
  title        = {Simultaneous synthesis of {FLAIR} and segmentation of white matter
                  hypointensities from {T1} MRIs},
  journal      = {CoRR},
  volume       = {abs/1808.06519},
  year         = {2018},
  url          = {http://arxiv.org/abs/1808.06519},
  eprinttype    = {arXiv},
  eprint       = {1808.06519},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1808-06519.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1808-07431,
  author       = {Kerstin Kl{\"{a}}ser and
                  Pawel Markiewicz and
                  Marta Bianca Maria Ranzini and
                  Wenqi Li and
                  Marc Modat and
                  Brian F. Hutton and
                  David Atkinson and
                  Kris Thielemans and
                  M. Jorge Cardoso and
                  S{\'{e}}bastien Ourselin},
  title        = {Deep Boosted Regression for {MR} to {CT} Synthesis},
  journal      = {CoRR},
  volume       = {abs/1808.07431},
  year         = {2018},
  url          = {http://arxiv.org/abs/1808.07431},
  eprinttype    = {arXiv},
  eprint       = {1808.07431},
  timestamp    = {Fri, 11 Feb 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1808-07431.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1810-01928,
  author       = {Mauricio Orbes{-}Arteaga and
                  Lauge S{\o}rensen and
                  Manuel Jorge Cardoso and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin and
                  Stefan Sommer and
                  Mads Nielsen and
                  Christian Igel and
                  Akshay Pai},
  title        = {{PADDIT:} Probabilistic Augmentation of Data using Diffeomorphic Image
                  Transformation},
  journal      = {CoRR},
  volume       = {abs/1810.01928},
  year         = {2018},
  url          = {http://arxiv.org/abs/1810.01928},
  eprinttype    = {arXiv},
  eprint       = {1810.01928},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1810-01928.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fini/HolmesPMIHWCOJM17,
  author       = {Holly E. Holmes and
                  Nick M. Powell and
                  Da Ma and
                  Ozama Ismail and
                  Ian F. Harrison and
                  Jack A. Wells and
                  Niall Colgan and
                  James M. O'Callaghan and
                  Ross A. Johnson and
                  Tracey K. Murray and
                  Zeshan Ahmed and
                  Morten Heggenes and
                  Alice Fisher and
                  M. Jorge Cardoso and
                  Marc Modat and
                  Michael J. O'Neill and
                  Emily C. Collins and
                  Elizabeth M. C. Fisher and
                  S{\'{e}}bastien Ourselin and
                  Mark F. Lythgoe},
  title        = {Comparison of In Vivo and Ex Vivo {MRI} for the Detection of Structural
                  Abnormalities in a Mouse Model of Tauopathy},
  journal      = {Frontiers Neuroinformatics},
  volume       = {11},
  pages        = {20},
  year         = {2017},
  url          = {https://doi.org/10.3389/fninf.2017.00020},
  doi          = {10.3389/FNINF.2017.00020},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/fini/HolmesPMIHWCOJM17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpem/LangdonLMPH17,
  author       = {William B. Langdon and
                  Brian Yee Hong Lam and
                  Marc Modat and
                  Justyna Petke and
                  Mark Harman},
  title        = {Genetic improvement of {GPU} software},
  journal      = {Genet. Program. Evolvable Mach.},
  volume       = {18},
  number       = {1},
  pages        = {5--44},
  year         = {2017},
  url          = {https://doi.org/10.1007/s10710-016-9273-9},
  doi          = {10.1007/S10710-016-9273-9},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/gpem/LangdonLMPH17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/IglesiasFMGDMV17,
  author       = {Juan Eugenio Iglesias and
                  Sebastiano Ferraris and
                  Marc Modat and
                  Willy Gsell and
                  Jan Deprest and
                  Johannes L. van der Merwe and
                  Tom Vercauteren},
  editor       = {M. Jorge Cardoso and
                  Tal Arbel and
                  Andrew Melbourne and
                  Hrvoje Bogunovic and
                  Pim Moeskops and
                  Xinjian Chen and
                  Ernst Schwartz and
                  Mona Kathryn Garvin and
                  Emma C. Robinson and
                  Emanuele Trucco and
                  Michael Ebner and
                  Yanwu Xu and
                  Antonios Makropoulos and
                  Adrien E. Desjardins and
                  Tom Vercauteren},
  title        = {Template-Free Estimation of Intracranial Volume: {A} Preterm Birth
                  Animal Model Study},
  booktitle    = {Fetal, Infant and Ophthalmic Medical Image Analysis - International
                  Workshop, {FIFI} 2017, and 4th International Workshop, {OMIA} 2017,
                  Held in Conjunction with {MICCAI} 2017, Qu{\'{e}}bec City, QC,
                  Canada, September 14, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10554},
  pages        = {3--13},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-67561-9\_1},
  doi          = {10.1007/978-3-319-67561-9\_1},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/IglesiasFMGDMV17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/RanziniECFVHHOM17,
  author       = {Marta Bianca Maria Ranzini and
                  Michael Ebner and
                  M. Jorge Cardoso and
                  Anastasia Fotiadou and
                  Tom Vercauteren and
                  Johann Henckel and
                  Alister Hart and
                  S{\'{e}}bastien Ourselin and
                  Marc Modat},
  editor       = {Ben Glocker and
                  Jianhua Yao and
                  Tomaz Vrtovec and
                  Alejandro F. Frangi and
                  Guoyan Zheng},
  title        = {Joint Multimodal Segmentation of Clinical {CT} and {MR} from Hip Arthroplasty
                  Patients},
  booktitle    = {Computational Methods and Clinical Applications in Musculoskeletal
                  Imaging - 5th International Workshop, {MSKI} 2017, Held in Conjunction
                  with {MICCAI} 2017, Quebec City, QC, Canada, September 10, 2017, Revised
                  Selected Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {10734},
  pages        = {72--84},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-74113-0\_7},
  doi          = {10.1007/978-3-319-74113-0\_7},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/RanziniECFVHHOM17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1708-08117,
  author       = {Jonas Pichat and
                  Juan Eugenio Iglesias and
                  Sotiris Nousias and
                  Tarek A. Yousry and
                  S{\'{e}}bastien Ourselin and
                  Marc Modat},
  title        = {Part-to-whole Registration of Histology and {MRI} using Shape Elements},
  journal      = {CoRR},
  volume       = {abs/1708.08117},
  year         = {2017},
  url          = {http://arxiv.org/abs/1708.08117},
  eprinttype    = {arXiv},
  eprint       = {1708.08117},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1708-08117.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1711-01666,
  author       = {Yipeng Hu and
                  Marc Modat and
                  Eli Gibson and
                  Nooshin Ghavami and
                  Ester Bonmati and
                  Caroline M. Moore and
                  Mark Emberton and
                  J. Alison Noble and
                  Dean C. Barratt and
                  Tom Vercauteren},
  title        = {Label-driven weakly-supervised learning for multimodal deformable
                  image registration},
  journal      = {CoRR},
  volume       = {abs/1711.01666},
  year         = {2017},
  url          = {http://arxiv.org/abs/1711.01666},
  eprinttype    = {arXiv},
  eprint       = {1711.01666},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1711-01666.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tbe/XuLHMROAL16,
  author       = {Zhoubing Xu and
                  Christopher P. Lee and
                  Mattias P. Heinrich and
                  Marc Modat and
                  Daniel Rueckert and
                  S{\'{e}}bastien Ourselin and
                  Richard G. Abramson and
                  Bennett A. Landman},
  title        = {Evaluation of Six Registration Methods for the Human Abdomen on Clinically
                  Acquired {CT}},
  journal      = {{IEEE} Trans. Biomed. Eng.},
  volume       = {63},
  number       = {8},
  pages        = {1563--1572},
  year         = {2016},
  url          = {https://doi.org/10.1109/TBME.2016.2574816},
  doi          = {10.1109/TBME.2016.2574816},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/tbe/XuLHMROAL16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cvpr/FerrarisLDMV16,
  author       = {Sebastiano Ferraris and
                  Marco Lorenzi and
                  Pankaj Daga and
                  Marc Modat and
                  Tom Vercauteren},
  title        = {Accurate Small Deformation Exponential Approximant to Integrate Large
                  Velocity Fields: Application to Image Registration},
  booktitle    = {2016 {IEEE} Conference on Computer Vision and Pattern Recognition
                  Workshops, {CVPR} Workshops 2016, Las Vegas, NV, USA, June 26 - July
                  1, 2016},
  pages        = {457--464},
  publisher    = {{IEEE} Computer Society},
  year         = {2016},
  url          = {https://doi.org/10.1109/CVPRW.2016.64},
  doi          = {10.1109/CVPRW.2016.64},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/cvpr/FerrarisLDMV16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/CuryLCNRRODM16,
  author       = {Claire Cury and
                  Marco Lorenzi and
                  David M. Cash and
                  Jennifer M. Nicholas and
                  Alexandre Routier and
                  Jonathan D. Rohrer and
                  S{\'{e}}bastien Ourselin and
                  Stanley Durrleman and
                  Marc Modat},
  editor       = {Martin Reuter and
                  Christian Wachinger and
                  Herv{\'{e}} Lombaert},
  title        = {Spatio-Temporal Shape Analysis of Cross-Sectional Data for Detection
                  of Early Changes in Neurodegenerative Disease},
  booktitle    = {Spectral and Shape Analysis in Medical Imaging - First International
                  Workshop, SeSAMI 2016, Held in Conjunction with {MICCAI} 2016, Athens,
                  Greece, October 21, 2016, Revised Selected Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {10126},
  pages        = {63--75},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-3-319-51237-2\_6},
  doi          = {10.1007/978-3-319-51237-2\_6},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/CuryLCNRRODM16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/KochanMVWMWMTYD16,
  author       = {Martin Kochan and
                  Marc Modat and
                  Tom Vercauteren and
                  Mark White and
                  Laura Mancini and
                  Gavin P. Winston and
                  Andrew W. McEvoy and
                  John S. Thornton and
                  Tarek A. Yousry and
                  John S. Duncan and
                  S{\'{e}}bastien Ourselin and
                  Danail Stoyanov},
  editor       = {S{\'{e}}bastien Ourselin and
                  Leo Joskowicz and
                  Mert R. Sabuncu and
                  G{\"{o}}zde B. {\"{U}}nal and
                  William M. Wells III},
  title        = {Bilateral Weighted Adaptive Local Similarity Measure for Registration
                  in Neurosurgery},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2016 - 19th International Conference, Athens, Greece, October 17-21,
                  2016, Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {9902},
  pages        = {81--88},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-3-319-46726-9\_10},
  doi          = {10.1007/978-3-319-46726-9\_10},
  timestamp    = {Mon, 05 Feb 2024 20:27:27 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/KochanMVWMWMTYD16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cars/JohnsenTCHMEHHM15,
  author       = {Stian Flage Johnsen and
                  Zeike A. Taylor and
                  Matthew J. Clarkson and
                  John H. Hipwell and
                  Marc Modat and
                  Bj{\"{o}}rn Eiben and
                  Lianghao Han and
                  Yipeng Hu and
                  Thomy Mertzanidou and
                  David J. Hawkes and
                  S{\'{e}}bastien Ourselin},
  title        = {NiftySim: {A} GPU-based nonlinear finite element package for simulation
                  of soft tissue biomechanics},
  journal      = {Int. J. Comput. Assist. Radiol. Surg.},
  volume       = {10},
  number       = {7},
  pages        = {1077--1095},
  year         = {2015},
  url          = {https://doi.org/10.1007/s11548-014-1118-5},
  doi          = {10.1007/S11548-014-1118-5},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/cars/JohnsenTCHMEHHM15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/SimpsonCMCWASO15,
  author       = {Ivor J. A. Simpson and
                  Manuel Jorge Cardoso and
                  Marc Modat and
                  David M. Cash and
                  Mark W. Woolrich and
                  Jesper L. R. Andersson and
                  Julia A. Schnabel and
                  S{\'{e}}bastien Ourselin},
  title        = {Probabilistic non-linear registration with spatially adaptive regularisation},
  journal      = {Medical Image Anal.},
  volume       = {26},
  number       = {1},
  pages        = {203--216},
  year         = {2015},
  url          = {https://doi.org/10.1016/j.media.2015.08.006},
  doi          = {10.1016/J.MEDIA.2015.08.006},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/mia/SimpsonCMCWASO15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/WellsOHPJSTIWGR15,
  author       = {Jack A. Wells and
                  James M. O'Callaghan and
                  Holly E. Holmes and
                  Nick M. Powell and
                  Ross A. Johnson and
                  Bernard Siow and
                  F. Torrealdea and
                  Ozama Ismail and
                  S. Walker{-}Samuel and
                  Xavier Golay and
                  M. Rega and
                  Simon Richardson and
                  Marc Modat and
                  Manuel Jorge Cardoso and
                  S{\'{e}}bastien Ourselin and
                  Adam J. Schwarz and
                  Zeshan Ahmed and
                  Tracey K. Murray and
                  Michael J. O'Neill and
                  Emily C. Collins and
                  Niall Colgan and
                  Mark F. Lythgoe},
  title        = {In vivo imaging of tau pathology using multi-parametric quantitative
                  {MRI}},
  journal      = {NeuroImage},
  volume       = {111},
  pages        = {369--378},
  year         = {2015},
  url          = {https://doi.org/10.1016/j.neuroimage.2015.02.023},
  doi          = {10.1016/J.NEUROIMAGE.2015.02.023},
  timestamp    = {Mon, 02 Oct 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/WellsOHPJSTIWGR15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/Eaton-RosenMOCM15,
  author       = {Zach Eaton{-}Rosen and
                  Andrew Melbourne and
                  Eliza Orasanu and
                  Manuel Jorge Cardoso and
                  Marc Modat and
                  Alan Bainbridge and
                  Giles S. Kendall and
                  Nicola J. Robertson and
                  Neil Marlow and
                  S{\'{e}}bastien Ourselin},
  title        = {Longitudinal measurement of the developing grey matter in preterm
                  subjects using multi-modal {MRI}},
  journal      = {NeuroImage},
  volume       = {111},
  pages        = {580--589},
  year         = {2015},
  url          = {https://doi.org/10.1016/j.neuroimage.2015.02.010},
  doi          = {10.1016/J.NEUROIMAGE.2015.02.010},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/Eaton-RosenMOCM15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/CashFIUKFSBRFLF15,
  author       = {David M. Cash and
                  Chris Frost and
                  Leonardo O. Iheme and
                  Devrim {\"{U}}nay and
                  Melek Kandemir and
                  Jurgen Fripp and
                  Olivier Salvado and
                  Pierrick Bourgeat and
                  Martin Reuter and
                  Bruce Fischl and
                  Marco Lorenzi and
                  Giovanni B. Frisoni and
                  Xavier Pennec and
                  Ronald K. Pierson and
                  Jeffrey L. Gunter and
                  Matthew L. Senjem and
                  Clifford R. Jack Jr. and
                  Nicolas Guizard and
                  Vladimir S. Fonov and
                  D. Louis Collins and
                  Marc Modat and
                  M. Jorge Cardoso and
                  Kelvin K. Leung and
                  Hongzhi Wang and
                  Sandhitsu R. Das and
                  Paul A. Yushkevich and
                  Ian B. Malone and
                  Nick C. Fox and
                  Jonathan M. Schott and
                  S{\'{e}}bastien Ourselin},
  title        = {Assessing atrophy measurement techniques in dementia: Results from
                  the {MIRIAD} atrophy challenge},
  journal      = {NeuroImage},
  volume       = {123},
  pages        = {149--164},
  year         = {2015},
  url          = {https://doi.org/10.1016/j.neuroimage.2015.07.087},
  doi          = {10.1016/J.NEUROIMAGE.2015.07.087},
  timestamp    = {Mon, 25 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/CashFIUKFSBRFLF15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/CardosoMWMCRO15,
  author       = {Manuel Jorge Cardoso and
                  Marc Modat and
                  Robin Wolz and
                  Andrew Melbourne and
                  David M. Cash and
                  Daniel Rueckert and
                  S{\'{e}}bastien Ourselin},
  title        = {Geodesic Information Flows: Spatially-Variant Graphs and Their Application
                  to Segmentation and Fusion},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {34},
  number       = {9},
  pages        = {1976--1988},
  year         = {2015},
  url          = {https://doi.org/10.1109/TMI.2015.2418298},
  doi          = {10.1109/TMI.2015.2418298},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/tmi/CardosoMWMCRO15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/YoungMCMAO15,
  author       = {Jonathan Young and
                  Alex F. Mendelson and
                  Manuel Jorge Cardoso and
                  Marc Modat and
                  John Ashburner and
                  S{\'{e}}bastien Ourselin},
  editor       = {Kanwal K. Bhatia and
                  Herve Lombaert},
  title        = {Improving {MRI} Brain Image Classification with Anatomical Regional
                  Kernels},
  booktitle    = {Machine Learning Meets Medical Imaging - First International Workshop,
                  {MLMMI} 2015, Held in Conjunction with {ICML} 2015, Lille, France,
                  July 11, 2015. Revised Selected Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {9487},
  pages        = {45--53},
  publisher    = {Springer},
  year         = {2015},
  url          = {https://doi.org/10.1007/978-3-319-27929-9\_5},
  doi          = {10.1007/978-3-319-27929-9\_5},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/icml/YoungMCMAO15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipmi/CardosoSMO15,
  author       = {Manuel Jorge Cardoso and
                  Carole H. Sudre and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin},
  editor       = {S{\'{e}}bastien Ourselin and
                  Daniel C. Alexander and
                  Carl{-}Fredrik Westin and
                  Manuel Jorge Cardoso},
  title        = {Template-Based Multimodal Joint Generative Model of Brain Data},
  booktitle    = {Information Processing in Medical Imaging - 24th International Conference,
                  {IPMI} 2015, Sabhal Mor Ostaig, Isle of Skye, UK, June 28 - July 3,
                  2015, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {9123},
  pages        = {17--29},
  publisher    = {Springer},
  year         = {2015},
  url          = {https://doi.org/10.1007/978-3-319-19992-4\_2},
  doi          = {10.1007/978-3-319-19992-4\_2},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ipmi/CardosoSMO15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/PichatMYO15,
  author       = {Jonas Pichat and
                  Marc Modat and
                  Tarek A. Yousry and
                  S{\'{e}}bastien Ourselin},
  title        = {A multi-path approach to histology volume reconstruction},
  booktitle    = {12th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
                  2015, Brooklyn, NY, USA, April 16-19, 2015},
  pages        = {1280--1283},
  publisher    = {{IEEE}},
  year         = {2015},
  url          = {https://doi.org/10.1109/ISBI.2015.7164108},
  doi          = {10.1109/ISBI.2015.7164108},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/PichatMYO15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/JohnsenTCMSTGDT15,
  author       = {Stian Flage Johnsen and
                  Stephen A. Thompson and
                  Matthew J. Clarkson and
                  Marc Modat and
                  Yi Song and
                  Johannes Totz and
                  Kurinchi Gurusamy and
                  Brian R. Davidson and
                  Zeike A. Taylor and
                  David J. Hawkes and
                  S{\'{e}}bastien Ourselin},
  editor       = {Nassir Navab and
                  Joachim Hornegger and
                  William M. Wells III and
                  Alejandro F. Frangi},
  title        = {Database-Based Estimation of Liver Deformation under Pneumoperitoneum
                  for Surgical Image-Guidance and Simulation},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2015 - 18th International Conference Munich, Germany, October 5-9,
                  2015, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {9350},
  pages        = {450--458},
  publisher    = {Springer},
  year         = {2015},
  url          = {https://doi.org/10.1007/978-3-319-24571-3\_54},
  doi          = {10.1007/978-3-319-24571-3\_54},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/JohnsenTCMSTGDT15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/BurgosCGVMMKPAA15,
  author       = {Ninon Burgos and
                  Manuel Jorge Cardoso and
                  Filipa Guerreiro and
                  Catarina Veiga and
                  Marc Modat and
                  Jamie McClelland and
                  Antje{-}Christin Knopf and
                  Shonit Punwani and
                  David Atkinson and
                  Simon R. Arridge and
                  Brian F. Hutton and
                  S{\'{e}}bastien Ourselin},
  editor       = {Nassir Navab and
                  Joachim Hornegger and
                  William M. Wells III and
                  Alejandro F. Frangi},
  title        = {Robust {CT} Synthesis for Radiotherapy Planning: Application to the
                  Head and Neck Region},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2015 - 18th International Conference Munich, Germany, October 5-9,
                  2015, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {9350},
  pages        = {476--484},
  publisher    = {Springer},
  year         = {2015},
  url          = {https://doi.org/10.1007/978-3-319-24571-3\_57},
  doi          = {10.1007/978-3-319-24571-3\_57},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/BurgosCGVMMKPAA15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/MaCZMPWTFLO15,
  author       = {Da Ma and
                  Manuel Jorge Cardoso and
                  Maria A. Zuluaga and
                  Marc Modat and
                  Nick M. Powell and
                  Frances K. Wiseman and
                  Victor L. J. Tybulewicz and
                  Elizabeth M. C. Fisher and
                  Mark F. Lythgoe and
                  S{\'{e}}bastien Ourselin},
  editor       = {Nassir Navab and
                  Joachim Hornegger and
                  William M. Wells III and
                  Alejandro F. Frangi},
  title        = {Grey Matter Sublayer Thickness Estimation in the Mouse Cerebellum},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2015 - 18th International Conference Munich, Germany, October 5 -
                  9, 2015, Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {9351},
  pages        = {644--651},
  publisher    = {Springer},
  year         = {2015},
  url          = {https://doi.org/10.1007/978-3-319-24574-4\_77},
  doi          = {10.1007/978-3-319-24574-4\_77},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/MaCZMPWTFLO15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/CardosoMVO15,
  author       = {Manuel Jorge Cardoso and
                  Marc Modat and
                  Tom Vercauteren and
                  S{\'{e}}bastien Ourselin},
  editor       = {Nassir Navab and
                  Joachim Hornegger and
                  William M. Wells III and
                  Alejandro F. Frangi},
  title        = {Scale Factor Point Spread Function Matching: Beyond Aliasing in Image
                  Resampling},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2015 - 18th International Conference Munich, Germany, October 5-9,
                  2015, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {9350},
  pages        = {675--683},
  publisher    = {Springer},
  year         = {2015},
  url          = {https://doi.org/10.1007/978-3-319-24571-3\_81},
  doi          = {10.1007/978-3-319-24571-3\_81},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/CardosoMVO15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/KlemtMPCHHO15,
  author       = {Christian Klemt and
                  Marc Modat and
                  Jonas Pichat and
                  Manuel Jorge Cardoso and
                  Johann Henckel and
                  Alister Hart and
                  S{\'{e}}bastien Ourselin},
  editor       = {S{\'{e}}bastien Ourselin and
                  Martin Andreas Styner},
  title        = {Automatic assessment of volume asymmetries applied to hip abductor
                  muscles in patients with hip arthroplasty},
  booktitle    = {Medical Imaging 2015: Image Processing, Orlando, Florida, USA, February
                  24-26, 2015},
  series       = {{SPIE} Proceedings},
  volume       = {9413},
  pages        = {94131M},
  publisher    = {{SPIE}},
  year         = {2015},
  url          = {https://doi.org/10.1117/12.2082341},
  doi          = {10.1117/12.2082341},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/KlemtMPCHHO15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/DagaPMWMWMTYDDO14,
  author       = {Pankaj Daga and
                  Tejas Pendse and
                  Marc Modat and
                  Mark White and
                  Laura Mancini and
                  Gavin P. Winston and
                  Andrew W. McEvoy and
                  John S. Thornton and
                  Tarek A. Yousry and
                  Ivana Drobnjak and
                  John S. Duncan and
                  S{\'{e}}bastien Ourselin},
  title        = {Susceptibility artefact correction using dynamic graph cuts: Application
                  to neurosurgery},
  journal      = {Medical Image Anal.},
  volume       = {18},
  number       = {7},
  pages        = {1132--1142},
  year         = {2014},
  url          = {https://doi.org/10.1016/j.media.2014.06.008},
  doi          = {10.1016/J.MEDIA.2014.06.008},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/DagaPMWMWMTYDDO14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/HanHEBMOH14,
  author       = {Lianghao Han and
                  John H. Hipwell and
                  Bj{\"{o}}rn Eiben and
                  Dean C. Barratt and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin and
                  David J. Hawkes},
  title        = {A Nonlinear Biomechanical Model Based Registration Method for Aligning
                  Prone and Supine {MR} Breast Images},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {33},
  number       = {3},
  pages        = {682--694},
  year         = {2014},
  url          = {https://doi.org/10.1109/TMI.2013.2294539},
  doi          = {10.1109/TMI.2013.2294539},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/tmi/HanHEBMOH14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/BurgosCTMPDBAMSDAAHO14,
  author       = {Ninon Burgos and
                  Manuel Jorge Cardoso and
                  Kris Thielemans and
                  Marc Modat and
                  Stefano Pedemonte and
                  John C. Dickson and
                  Anna Barnes and
                  Rebekah Ahmed and
                  Colin J. Mahoney and
                  Jonathan M. Schott and
                  John S. Duncan and
                  David Atkinson and
                  Simon R. Arridge and
                  Brian F. Hutton and
                  S{\'{e}}bastien Ourselin},
  title        = {Attenuation Correction Synthesis for Hybrid {PET-MR} Scanners: Application
                  to Brain Studies},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {33},
  number       = {12},
  pages        = {2332--2341},
  year         = {2014},
  url          = {https://doi.org/10.1109/TMI.2014.2340135},
  doi          = {10.1109/TMI.2014.2340135},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/tmi/BurgosCTMPDBAMSDAAHO14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gecco/LangdonMPH14,
  author       = {William B. Langdon and
                  Marc Modat and
                  Justyna Petke and
                  Mark Harman},
  editor       = {Dirk V. Arnold},
  title        = {Improving 3D medical image registration {CUDA} software with genetic
                  programming},
  booktitle    = {Genetic and Evolutionary Computation Conference, {GECCO} '14, Vancouver,
                  BC, Canada, July 12-16, 2014},
  pages        = {951--958},
  publisher    = {{ACM}},
  year         = {2014},
  url          = {https://doi.org/10.1145/2576768.2598244},
  doi          = {10.1145/2576768.2598244},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/gecco/LangdonMPH14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ModatSCCTFO14,
  author       = {Marc Modat and
                  Ivor J. A. Simpson and
                  Manuel Jorge Cardoso and
                  David M. Cash and
                  Nicolas Toussaint and
                  Nick C. Fox and
                  S{\'{e}}bastien Ourselin},
  editor       = {Polina Golland and
                  Nobuhiko Hata and
                  Christian Barillot and
                  Joachim Hornegger and
                  Robert D. Howe},
  title        = {Simulating Neurodegeneration through Longitudinal Population Analysis
                  of Structural and Diffusion Weighted {MRI} Data},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2014 - 17th International Conference, Boston, MA, USA, September 14-18,
                  2014, Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {8675},
  pages        = {57--64},
  publisher    = {Springer},
  year         = {2014},
  url          = {https://doi.org/10.1007/978-3-319-10443-0\_8},
  doi          = {10.1007/978-3-319-10443-0\_8},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/ModatSCCTFO14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/Eaton-RosenMOMCBKRMO14,
  author       = {Zach Eaton{-}Rosen and
                  Andrew Melbourne and
                  Eliza Orasanu and
                  Marc Modat and
                  Manuel Jorge Cardoso and
                  Alan Bainbridge and
                  Giles S. Kendall and
                  Nicola J. Robertson and
                  Neil Marlow and
                  S{\'{e}}bastien Ourselin},
  editor       = {Polina Golland and
                  Nobuhiko Hata and
                  Christian Barillot and
                  Joachim Hornegger and
                  Robert D. Howe},
  title        = {Longitudinal Measurement of the Developing Thalamus in the Preterm
                  Brain Using Multi-modal {MRI}},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2014 - 17th International Conference, Boston, MA, USA, September 14-18,
                  2014, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {8674},
  pages        = {276--283},
  publisher    = {Springer},
  year         = {2014},
  url          = {https://doi.org/10.1007/978-3-319-10470-6\_35},
  doi          = {10.1007/978-3-319-10470-6\_35},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/Eaton-RosenMOMCBKRMO14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/BragmanMMOHH14,
  author       = {Felix J. S. Bragman and
                  Jamie R. McClelland and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin and
                  John R. Hurst and
                  David J. Hawkes},
  editor       = {Polina Golland and
                  Nobuhiko Hata and
                  Christian Barillot and
                  Joachim Hornegger and
                  Robert D. Howe},
  title        = {Multi-scale Analysis of Imaging Features and Its Use in the Study
                  of {COPD} Exacerbation Susceptible Phenotypes},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2014 - 17th International Conference, Boston, MA, USA, September 14-18,
                  2014, Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {8675},
  pages        = {417--424},
  publisher    = {Springer},
  year         = {2014},
  url          = {https://doi.org/10.1007/978-3-319-10443-0\_53},
  doi          = {10.1007/978-3-319-10443-0\_53},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/BragmanMMOHH14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/HamyMSDCPOAM14,
  author       = {Valentin Hamy and
                  Marc Modat and
                  Rebecca Shipley and
                  Nikolaos Dikaios and
                  Jon O. Cleary and
                  Shonit Punwani and
                  S{\'{e}}bastien Ourselin and
                  David Atkinson and
                  Andrew Melbourne},
  editor       = {S{\'{e}}bastien Ourselin and
                  Martin A. Styner},
  title        = {Multi-modal pharmacokinetic modelling for {DCE-MRI:} using diffusion
                  weighted imaging to constrain the local arterial input function},
  booktitle    = {Medical Imaging 2014: Image Processing, San Diego, California, USA,
                  February 16-18, 2014},
  series       = {{SPIE} Proceedings},
  volume       = {9034},
  pages        = {90340R},
  publisher    = {{SPIE}},
  year         = {2014},
  url          = {https://doi.org/10.1117/12.2042780},
  doi          = {10.1117/12.2042780},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/HamyMSDCPOAM14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/ModatCDWDO14,
  author       = {Marc Modat and
                  David M. Cash and
                  Pankaj Daga and
                  Gavin P. Winston and
                  John S. Duncan and
                  S{\'{e}}bastien Ourselin},
  editor       = {S{\'{e}}bastien Ourselin and
                  Martin A. Styner},
  title        = {A symmetric block-matching framework for global registration},
  booktitle    = {Medical Imaging 2014: Image Processing, San Diego, California, USA,
                  February 16-18, 2014},
  series       = {{SPIE} Proceedings},
  volume       = {9034},
  pages        = {90341D},
  publisher    = {{SPIE}},
  year         = {2014},
  url          = {https://doi.org/10.1117/12.2043652},
  doi          = {10.1117/12.2043652},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/ModatCDWDO14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nips/YoungMCAO14,
  author       = {Jonathan Young and
                  Marc Modat and
                  Manuel Jorge Cardoso and
                  John Ashburner and
                  S{\'{e}}bastien Ourselin},
  editor       = {Irina Rish and
                  Georg Langs and
                  Leila Wehbe and
                  Guillermo A. Cecchi and
                  Kai{-}min Kevin Chang and
                  Brian Murphy},
  title        = {An Oblique Approach to Prediction of Conversion to Alzheimer's Disease
                  with Multikernel Gaussian Processes},
  booktitle    = {Machine Learning and Interpretation in Neuroimaging - 4th International
                  Workshop, {MLINI} 2014, Held at {NIPS} 2014, Montreal, QC, Canada,
                  December 13, 2014, Revised Selected Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {9444},
  pages        = {122--128},
  publisher    = {Springer},
  year         = {2014},
  url          = {https://doi.org/10.1007/978-3-319-45174-9\_13},
  doi          = {10.1007/978-3-319-45174-9\_13},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/nips/YoungMCAO14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wbir/2014,
  editor       = {S{\'{e}}bastien Ourselin and
                  Marc Modat},
  title        = {Biomedical Image Registration - 6th International Workshop, {WBIR}
                  2014, London, UK, July 7-8, 2014. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {8545},
  publisher    = {Springer},
  year         = {2014},
  url          = {https://doi.org/10.1007/978-3-319-08554-8},
  doi          = {10.1007/978-3-319-08554-8},
  isbn         = {978-3-319-08553-1},
  timestamp    = {Tue, 14 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/wbir/2014.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/CardosoLMKCBFO13,
  author       = {Manuel Jorge Cardoso and
                  Kelvin K. Leung and
                  Marc Modat and
                  Shiva Keihaninejad and
                  David M. Cash and
                  Josephine Barnes and
                  Nick C. Fox and
                  S{\'{e}}bastien Ourselin},
  title        = {{STEPS:} Similarity and Truth Estimation for Propagated Segmentations
                  and its application to hippocampal segmentation and brain parcelation},
  journal      = {Medical Image Anal.},
  volume       = {17},
  number       = {6},
  pages        = {671--684},
  year         = {2013},
  url          = {https://doi.org/10.1016/j.media.2013.02.006},
  doi          = {10.1016/J.MEDIA.2013.02.006},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/mia/CardosoLMKCBFO13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/CardosoMKMRMO13,
  author       = {Manuel Jorge Cardoso and
                  Andrew Melbourne and
                  Giles S. Kendall and
                  Marc Modat and
                  Nicola J. Robertson and
                  Neil Marlow and
                  S{\'{e}}bastien Ourselin},
  title        = {AdaPT: An adaptive preterm segmentation algorithm for neonatal brain
                  {MRI}},
  journal      = {NeuroImage},
  volume       = {65},
  pages        = {97--108},
  year         = {2013},
  url          = {https://doi.org/10.1016/j.neuroimage.2012.08.009},
  doi          = {10.1016/J.NEUROIMAGE.2012.08.009},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/CardosoMKMRMO13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/KeihaninejadZRMMCCFO13,
  author       = {Shiva Keihaninejad and
                  Hui Zhang and
                  Natalie S. Ryan and
                  Ian B. Malone and
                  Marc Modat and
                  Manuel Jorge Cardoso and
                  David M. Cash and
                  Nick C. Fox and
                  S{\'{e}}bastien Ourselin},
  title        = {An unbiased longitudinal analysis framework for tracking white matter
                  changes using diffusion tensor imaging with application to Alzheimer's
                  disease},
  journal      = {NeuroImage},
  volume       = {72},
  pages        = {153--163},
  year         = {2013},
  url          = {https://doi.org/10.1016/j.neuroimage.2013.01.044},
  doi          = {10.1016/J.NEUROIMAGE.2013.01.044},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/KeihaninejadZRMMCCFO13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fimh/ZuluagaCMO13,
  author       = {Maria A. Zuluaga and
                  Manuel Jorge Cardoso and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin},
  editor       = {S{\'{e}}bastien Ourselin and
                  Daniel Rueckert and
                  Nicolas Smith},
  title        = {Multi-atlas Propagation Whole Heart Segmentation from {MRI} and {CTA}
                  Using a Local Normalised Correlation Coefficient Criterion},
  booktitle    = {Functional Imaging and Modeling of the Heart - 7th International Conference,
                  {FIMH} 2013, London, UK, June 20-22, 2013. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {7945},
  pages        = {174--181},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-642-38899-6\_21},
  doi          = {10.1007/978-3-642-38899-6\_21},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/fimh/ZuluagaCMO13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/SimpsonWCCMSO13,
  author       = {Ivor J. A. Simpson and
                  Mark William Woolrich and
                  Manuel Jorge Cardoso and
                  David M. Cash and
                  Marc Modat and
                  Julia A. Schnabel and
                  S{\'{e}}bastien Ourselin},
  editor       = {Kensaku Mori and
                  Ichiro Sakuma and
                  Yoshinobu Sato and
                  Christian Barillot and
                  Nassir Navab},
  title        = {A Bayesian Approach for Spatially Adaptive Regularisation in Non-rigid
                  Registration},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2013 - 16th International Conference, Nagoya, Japan, September 22-26,
                  2013, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {8150},
  pages        = {10--18},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-642-40763-5\_2},
  doi          = {10.1007/978-3-642-40763-5\_2},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/SimpsonWCCMSO13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/RothMHBHMZOHH13,
  author       = {Holger Roth and
                  Jamie McClelland and
                  Thomas Hampshire and
                  Darren Boone and
                  Yipeng Hu and
                  Marc Modat and
                  Hui Zhang and
                  S{\'{e}}bastien Ourselin and
                  Steve Halligan and
                  David J. Hawkes},
  editor       = {Hiroyuki Yoshida and
                  Simon K. Warfield and
                  Michael W. Vannier},
  title        = {Registration of Prone and Supine {CT} Colonography Datasets with Differing
                  Endoluminal Distension},
  booktitle    = {Abdominal Imaging. Computation and Clinical Applications - 5th International
                  Workshop, Held in Conjunction with {MICCAI} 2013, Nagoya, Japan, September
                  22, 2013. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {8198},
  pages        = {29--38},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-642-41083-3\_4},
  doi          = {10.1007/978-3-642-41083-3\_4},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/RothMHBHMZOHH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/BurgosCMPDBDAAHO13,
  author       = {Ninon Burgos and
                  Manuel Jorge Cardoso and
                  Marc Modat and
                  Stefano Pedemonte and
                  John C. Dickson and
                  Anna Barnes and
                  John S. Duncan and
                  David Atkinson and
                  Simon R. Arridge and
                  Brian F. Hutton and
                  S{\'{e}}bastien Ourselin},
  editor       = {Kensaku Mori and
                  Ichiro Sakuma and
                  Yoshinobu Sato and
                  Christian Barillot and
                  Nassir Navab},
  title        = {Attenuation Correction Synthesis for Hybrid {PET-MR} Scanners},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2013 - 16th International Conference, Nagoya, Japan, September 22-26,
                  2013, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {8149},
  pages        = {147--154},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-642-40811-3\_19},
  doi          = {10.1007/978-3-642-40811-3\_19},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/BurgosCMPDBDAAHO13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/PetersenMCDOB13,
  author       = {Jens Petersen and
                  Marc Modat and
                  Manuel Jorge Cardoso and
                  Asger Dirksen and
                  S{\'{e}}bastien Ourselin and
                  Marleen de Bruijne},
  editor       = {Kensaku Mori and
                  Ichiro Sakuma and
                  Yoshinobu Sato and
                  Christian Barillot and
                  Nassir Navab},
  title        = {Quantitative Airway Analysis in Longitudinal Studies Using Groupwise
                  Registration and 4D Optimal Surfaces},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2013 - 16th International Conference, Nagoya, Japan, September 22-26,
                  2013, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {8150},
  pages        = {287--294},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-642-40763-5\_36},
  doi          = {10.1007/978-3-642-40763-5\_36},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/PetersenMCDOB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/DagaMWWMMTYDO13,
  author       = {Pankaj Daga and
                  Marc Modat and
                  Gavin Winston and
                  Mark White and
                  Laura Mancini and
                  Andrew W. McEvoy and
                  John S. Thornton and
                  Tarek A. Yousry and
                  John S. Duncan and
                  S{\'{e}}bastien Ourselin},
  editor       = {S{\'{e}}bastien Ourselin and
                  David R. Haynor},
  title        = {Susceptibility artefact correction by combining {B0} field maps and
                  non-rigid registration using graph cuts},
  booktitle    = {Medical Imaging 2013: Image Processing, Lake Buena Vista (Orlando
                  Area), Florida, USA, February 10-12, 2013},
  series       = {{SPIE} Proceedings},
  volume       = {8669},
  pages        = {86690B},
  publisher    = {{SPIE}},
  year         = {2013},
  url          = {https://doi.org/10.1117/12.2006800},
  doi          = {10.1117/12.2006800},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miip/DagaMWWMMTYDO13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/RothMMHBHPHOHH13,
  author       = {Holger R. Roth and
                  Jamie R. McClelland and
                  Marc Modat and
                  Thomas Hampshire and
                  Darren Boone and
                  Emma Helbren and
                  Andrew Plumb and
                  Mingxing Hu and
                  S{\'{e}}bastien Ourselin and
                  Steve Halligan and
                  David J. Hawkes},
  editor       = {S{\'{e}}bastien Ourselin and
                  David R. Haynor},
  title        = {{CT} colonography: inverse-consistent symmetric registration of prone
                  and supine inner colon surfaces},
  booktitle    = {Medical Imaging 2013: Image Processing, Lake Buena Vista (Orlando
                  Area), Florida, USA, February 10-12, 2013},
  series       = {{SPIE} Proceedings},
  volume       = {8669},
  pages        = {866912},
  publisher    = {{SPIE}},
  year         = {2013},
  url          = {https://doi.org/10.1117/12.2007004},
  doi          = {10.1117/12.2007004},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/RothMMHBHPHOHH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/FonteijnMCBLHSTOFA12,
  author       = {Hubert M. J. Fonteijn and
                  Marc Modat and
                  Matthew J. Clarkson and
                  Josephine Barnes and
                  Manja Lehmann and
                  Nicola Z. Hobbs and
                  Rachael I. Scahill and
                  Sarah J. Tabrizi and
                  S{\'{e}}bastien Ourselin and
                  Nick C. Fox and
                  Daniel C. Alexander},
  title        = {An event-based model for disease progression and its application in
                  familial Alzheimer's disease and Huntington's disease},
  journal      = {NeuroImage},
  volume       = {60},
  number       = {3},
  pages        = {1880--1889},
  year         = {2012},
  url          = {https://doi.org/10.1016/j.neuroimage.2012.01.062},
  doi          = {10.1016/J.NEUROIMAGE.2012.01.062},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/FonteijnMCBLHSTOFA12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/DagaWMWMCSSMTMYHDO12,
  author       = {Pankaj Daga and
                  Gavin Winston and
                  Marc Modat and
                  Mark White and
                  Laura Mancini and
                  Manuel Jorge Cardoso and
                  Mark R. Symms and
                  Jason Stretton and
                  Andrew W. McEvoy and
                  John S. Thornton and
                  Caroline Micallef and
                  Tarek A. Yousry and
                  David J. Hawkes and
                  John S. Duncan and
                  S{\'{e}}bastien Ourselin},
  title        = {Accurate Localization of Optic Radiation During Neurosurgery in an
                  Interventional {MRI} Suite},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {31},
  number       = {4},
  pages        = {882--891},
  year         = {2012},
  url          = {https://doi.org/10.1109/TMI.2011.2179668},
  doi          = {10.1109/TMI.2011.2179668},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tmi/DagaWMWMCSSMTMYHDO12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/YoungMCAO12,
  author       = {Jonathan Young and
                  Marc Modat and
                  Manuel Jorge Cardoso and
                  John Ashburner and
                  S{\'{e}}bastien Ourselin},
  title        = {Classification of Alzheimer's disease patients and controls with Gaussian
                  processes},
  booktitle    = {9th {IEEE} International Symposium on Biomedical Imaging: From Nano
                  to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings},
  pages        = {1523--1526},
  publisher    = {{IEEE}},
  year         = {2012},
  url          = {https://doi.org/10.1109/ISBI.2012.6235862},
  doi          = {10.1109/ISBI.2012.6235862},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/isbi/YoungMCAO12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/CardosoWMKDO12,
  author       = {Manuel Jorge Cardoso and
                  Gavin Winston and
                  Marc Modat and
                  Shiva Keihaninejad and
                  John S. Duncan and
                  S{\'{e}}bastien Ourselin},
  editor       = {Nicholas Ayache and
                  Herv{\'{e}} Delingette and
                  Polina Golland and
                  Kensaku Mori},
  title        = {Geodesic Shape-Based Averaging},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2012 - 15th International Conference, Nice, France, October 1-5, 2012,
                  Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {7512},
  pages        = {26--33},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-3-642-33454-2\_4},
  doi          = {10.1007/978-3-642-33454-2\_4},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/CardosoWMKDO12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/SimonyanMOCCZ12,
  author       = {Karen Simonyan and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin and
                  David M. Cash and
                  Antonio Criminisi and
                  Andrew Zisserman},
  editor       = {Hayit Greenspan and
                  Henning M{\"{u}}ller and
                  Tanveer Fathima Syeda{-}Mahmood},
  title        = {Immediate {ROI} Search for 3-D Medical Images},
  booktitle    = {Medical Content-Based Retrieval for Clinical Decision Support - Third
                  {MICCAI} International Workshop, {MCBR-CDS} 2012, Nice, France, October
                  1, 2012, Revised Selected Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {7723},
  pages        = {56--67},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-3-642-36678-9\_6},
  doi          = {10.1007/978-3-642-36678-9\_6},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/SimonyanMOCCZ12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/CardosoWMFRO12,
  author       = {Manuel Jorge Cardoso and
                  Robin Wolz and
                  Marc Modat and
                  Nick C. Fox and
                  Daniel Rueckert and
                  S{\'{e}}bastien Ourselin},
  editor       = {Nicholas Ayache and
                  Herv{\'{e}} Delingette and
                  Polina Golland and
                  Kensaku Mori},
  title        = {Geodesic Information Flows},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2012 - 15th International Conference, Nice, France, October 1-5, 2012,
                  Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {7511},
  pages        = {262--270},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-3-642-33418-4\_33},
  doi          = {10.1007/978-3-642-33418-4\_33},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/CardosoWMFRO12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/CashMMCCFO12,
  author       = {David M. Cash and
                  Andrew Melbourne and
                  Marc Modat and
                  Manuel Jorge Cardoso and
                  Matthew J. Clarkson and
                  Nick C. Fox and
                  S{\'{e}}bastien Ourselin},
  editor       = {Nicholas Ayache and
                  Herv{\'{e}} Delingette and
                  Polina Golland and
                  Kensaku Mori},
  title        = {Cortical Folding Analysis on Patients with Alzheimer's Disease and
                  Mild Cognitive Impairment},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2012 - 15th International Conference, Nice, France, October 1-5, 2012,
                  Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {7512},
  pages        = {289--296},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-3-642-33454-2\_36},
  doi          = {10.1007/978-3-642-33454-2\_36},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/CashMMCCFO12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/DucMLKO12,
  author       = {Albert K. Hoang Duc and
                  Marc Modat and
                  Kelvin K. Leung and
                  Timor Kadir and
                  S{\'{e}}bastien Ourselin},
  editor       = {David R. Haynor and
                  S{\'{e}}bastien Ourselin},
  title        = {Manifold learning for atlas selection in multi atlas-based segmentation
                  of hippocampus},
  booktitle    = {Medical Imaging 2012: Image Processing, San Diego, California, USA,
                  February 4, 2012},
  series       = {{SPIE} Proceedings},
  volume       = {8314},
  pages        = {83140Z},
  publisher    = {{SPIE}},
  year         = {2012},
  url          = {https://doi.org/10.1117/12.910602},
  doi          = {10.1117/12.910602},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/DucMLKO12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/MelbourneCTMHO12,
  author       = {Andrew Melbourne and
                  Nathan D. Cahill and
                  Christine Tanner and
                  Marc Modat and
                  David J. Hawkes and
                  S{\'{e}}bastien Ourselin},
  editor       = {David R. Haynor and
                  S{\'{e}}bastien Ourselin},
  title        = {Using fractional gradient information in non-rigid image registration:
                  application to breast {MRI}},
  booktitle    = {Medical Imaging 2012: Image Processing, San Diego, California, USA,
                  February 4, 2012},
  series       = {{SPIE} Proceedings},
  volume       = {8314},
  pages        = {83141Z},
  publisher    = {{SPIE}},
  year         = {2012},
  url          = {https://doi.org/10.1117/12.911173},
  doi          = {10.1117/12.911173},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/MelbourneCTMHO12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mmbia/ModatDCORA12,
  author       = {Marc Modat and
                  Pankaj Daga and
                  Manuel Jorge Cardoso and
                  S{\'{e}}bastien Ourselin and
                  Gerard R. Ridgway and
                  John Ashburner},
  title        = {Parametric non-rigid registration using a stationary velocity field},
  booktitle    = {2012 {IEEE} Workshop on Mathematical Methods in Biomedical Image Analysis,
                  {MMBIA} 2012, Breckenridge, CO, USA, January 9-10, 2012},
  pages        = {145--150},
  publisher    = {{IEEE}},
  year         = {2012},
  url          = {https://doi.org/10.1109/MMBIA.2012.6164745},
  doi          = {10.1109/MMBIA.2012.6164745},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/mmbia/ModatDCORA12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mmbia/CardosoMOKC12,
  author       = {Manuel Jorge Cardoso and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin and
                  Shiva Keihaninejad and
                  David M. Cash},
  title        = {Multi-STEPS: Multi-label similarity and truth estimation for propagated
                  segmentations},
  booktitle    = {2012 {IEEE} Workshop on Mathematical Methods in Biomedical Image Analysis,
                  {MMBIA} 2012, Breckenridge, CO, USA, January 9-10, 2012},
  pages        = {153--158},
  publisher    = {{IEEE}},
  year         = {2012},
  url          = {https://doi.org/10.1109/MMBIA.2012.6164748},
  doi          = {10.1109/MMBIA.2012.6164748},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mmbia/CardosoMOKC12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wbir/ModatCDCFO12,
  author       = {Marc Modat and
                  Manuel Jorge Cardoso and
                  Pankaj Daga and
                  David M. Cash and
                  Nick C. Fox and
                  S{\'{e}}bastien Ourselin},
  editor       = {Benoit M. Dawant and
                  Gary E. Christensen and
                  J. Michael Fitzpatrick and
                  Daniel Rueckert},
  title        = {Inverse-Consistent Symmetric Free Form Deformation},
  booktitle    = {Biomedical Image Registration - 5th International Workshop, {WBIR}
                  2012, Nashville, TN, USA, July 7-8, 2012. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {7359},
  pages        = {79--88},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-3-642-31340-0\_9},
  doi          = {10.1007/978-3-642-31340-0\_9},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/wbir/ModatCDCFO12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/ClearyMNPJMGHOSOL11,
  author       = {Jon O. Cleary and
                  Marc Modat and
                  Francesca C. Norris and
                  Anthony Price and
                  Sujatha A. Jayakody and
                  Juan Pedro Martinez{-}Barbera and
                  Nicholas D. E. Greene and
                  David J. Hawkes and
                  Roger J. Ordidge and
                  Peter J. Scambler and
                  S{\'{e}}bastien Ourselin and
                  Mark F. Lythgoe},
  title        = {Magnetic resonance virtual histology for embryos: 3D atlases for automated
                  high-throughput phenotyping},
  journal      = {NeuroImage},
  volume       = {54},
  number       = {2},
  pages        = {769--778},
  year         = {2011},
  url          = {https://doi.org/10.1016/j.neuroimage.2010.07.039},
  doi          = {10.1016/J.NEUROIMAGE.2010.07.039},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/ClearyMNPJMGHOSOL11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/LeungBMRBFO11,
  author       = {Kelvin K. Leung and
                  Josephine Barnes and
                  Marc Modat and
                  Gerard R. Ridgway and
                  Jonathan W. Bartlett and
                  Nick C. Fox and
                  S{\'{e}}bastien Ourselin},
  title        = {Brain {MAPS:} An automated, accurate and robust brain extraction technique
                  using a template library},
  journal      = {NeuroImage},
  volume       = {55},
  number       = {3},
  pages        = {1091--1108},
  year         = {2011},
  url          = {https://doi.org/10.1016/j.neuroimage.2010.12.067},
  doi          = {10.1016/J.NEUROIMAGE.2010.12.067},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/LeungBMRBFO11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/CardosoCRMFO11,
  author       = {Manuel Jorge Cardoso and
                  Matthew J. Clarkson and
                  Gerard R. Ridgway and
                  Marc Modat and
                  Nick C. Fox and
                  S{\'{e}}bastien Ourselin},
  title        = {LoAd: {A} locally adaptive cortical segmentation algorithm},
  journal      = {NeuroImage},
  volume       = {56},
  number       = {3},
  pages        = {1386--1397},
  year         = {2011},
  url          = {https://doi.org/10.1016/j.neuroimage.2011.02.013},
  doi          = {10.1016/J.NEUROIMAGE.2011.02.013},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/CardosoCRMFO11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/ClarksonCRMLRFO11,
  author       = {Matthew J. Clarkson and
                  Manuel Jorge Cardoso and
                  Gerard R. Ridgway and
                  Marc Modat and
                  Kelvin K. Leung and
                  Jonathan D. Rohrer and
                  Nick C. Fox and
                  S{\'{e}}bastien Ourselin},
  title        = {A comparison of voxel and surface based cortical thickness estimation
                  methods},
  journal      = {NeuroImage},
  volume       = {57},
  number       = {3},
  pages        = {856--865},
  year         = {2011},
  url          = {https://doi.org/10.1016/j.neuroimage.2011.05.053},
  doi          = {10.1016/J.NEUROIMAGE.2011.05.053},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/ClarksonCRMLRFO11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/MurphyGR11,
  author       = {Keelin Murphy and
                  Bram van Ginneken and
                  Joseph M. Reinhardt and
                  Sven Kabus and
                  Kai Ding and
                  Xiang Deng and
                  Kunlin Cao and
                  Kaifang Du and
                  Gary E. Christensen and
                  Vincent Garcia and
                  Tom Vercauteren and
                  Nicholas Ayache and
                  Olivier Commowick and
                  Gr{\'{e}}goire Malandain and
                  Ben Glocker and
                  Nikos Paragios and
                  Nassir Navab and
                  Vladlena Gorbunova and
                  Jon Sporring and
                  Marleen de Bruijne and
                  Xiao Han and
                  Mattias P. Heinrich and
                  Julia A. Schnabel and
                  Mark Jenkinson and
                  Cristian Lorenz and
                  Marc Modat and
                  Jamie McClelland and
                  S{\'{e}}bastien Ourselin and
                  Sascha E. A. Muenzing and
                  Max A. Viergever and
                  Dante De Nigris and
                  D. Louis Collins and
                  Tal Arbel and
                  Marta Peroni and
                  Rui Li and
                  Gregory C. Sharp and
                  Alexander Schmidt{-}Richberg and
                  Jan Ehrhardt and
                  Ren{\'{e}} Werner and
                  Dirk Smeets and
                  Dirk Loeckx and
                  Gang Song and
                  Nicholas J. Tustison and
                  Brian B. Avants and
                  James C. Gee and
                  Marius Staring and
                  Stefan Klein and
                  Berend C. Stoel and
                  Martin Urschler and
                  Manuel Werlberger and
                  Jef Vandemeulebroucke and
                  Simon Rit and
                  David Sarrut and
                  Josien P. W. Pluim},
  title        = {Evaluation of Registration Methods on Thoracic {CT:} The {EMPIRE10}
                  Challenge},
  journal      = {{IEEE} Trans. Medical Imaging},
  volume       = {30},
  number       = {11},
  pages        = {1901--1920},
  year         = {2011},
  url          = {https://doi.org/10.1109/TMI.2011.2158349},
  doi          = {10.1109/TMI.2011.2158349},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/tmi/MurphyGR11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipcai/DagaWMCWMMTMYHDO11,
  author       = {Pankaj Daga and
                  Gavin Winston and
                  Marc Modat and
                  Manuel Jorge Cardoso and
                  Mark White and
                  Laura Mancini and
                  Andrew W. McEvoy and
                  John S. Thornton and
                  Caroline Micallef and
                  Tarek A. Yousry and
                  David J. Hawkes and
                  John S. Duncan and
                  S{\'{e}}bastien Ourselin},
  editor       = {Russell H. Taylor and
                  Guang{-}Zhong Yang},
  title        = {Improved Neuronavigation through Integration of Intraoperative Anatomical
                  and Diffusion Images in an Interventional {MRI} Suite},
  booktitle    = {Information Processing in Computer-Assisted Interventions - Second
                  International Conference, {IPCAI} 2011, Berlin, Germany, June 22,
                  2011. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6689},
  pages        = {168--178},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-21504-9\_16},
  doi          = {10.1007/978-3-642-21504-9\_16},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ipcai/DagaWMCWMMTMYHDO11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipmi/CardosoCMO11,
  author       = {Manuel Jorge Cardoso and
                  Matthew J. Clarkson and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin},
  editor       = {G{\'{a}}bor Sz{\'{e}}kely and
                  Horst K. Hahn},
  title        = {On the Extraction of Topologically Correct Thickness Measurements
                  Using Khalimsky's Cubic Complex},
  booktitle    = {Information Processing in Medical Imaging - 22nd International Conference,
                  {IPMI} 2011, Kloster Irsee, Germany, July 3-8, 2011. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6801},
  pages        = {159--170},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-22092-0\_14},
  doi          = {10.1007/978-3-642-22092-0\_14},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ipmi/CardosoCMO11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipmi/FonteijnCMBLOFA11,
  author       = {Hubert M. J. Fonteijn and
                  Matthew J. Clarkson and
                  Marc Modat and
                  Josephine Barnes and
                  Manja Lehmann and
                  S{\'{e}}bastien Ourselin and
                  Nick C. Fox and
                  Daniel C. Alexander},
  editor       = {G{\'{a}}bor Sz{\'{e}}kely and
                  Horst K. Hahn},
  title        = {An Event-Based Disease Progression Model and Its Application to Familial
                  Alzheimer's Disease},
  booktitle    = {Information Processing in Medical Imaging - 22nd International Conference,
                  {IPMI} 2011, Kloster Irsee, Germany, July 3-8, 2011. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6801},
  pages        = {748--759},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-22092-0\_61},
  doi          = {10.1007/978-3-642-22092-0\_61},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ipmi/FonteijnCMBLOFA11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/DagaWMCSSMHDO11,
  author       = {Pankaj Daga and
                  Gavin Winston and
                  Marc Modat and
                  Manuel Jorge Cardoso and
                  Jason Stretton and
                  Mark R. Symms and
                  Andrew W. McEvoy and
                  David J. Hawkes and
                  John S. Duncan and
                  S{\'{e}}bastien Ourselin},
  title        = {Integrating structural and diffusion {MR} information for optic radiation
                  localisation in focal epilepsy patients},
  booktitle    = {Proceedings of the 8th {IEEE} International Symposium on Biomedical
                  Imaging: From Nano to Macro, {ISBI} 2011, March 30 - April 2, 2011,
                  Chicago, Illinois, {USA}},
  pages        = {353--356},
  publisher    = {{IEEE}},
  year         = {2011},
  url          = {https://doi.org/10.1109/ISBI.2011.5872422},
  doi          = {10.1109/ISBI.2011.5872422},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/DagaWMCSSMHDO11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/ClarksonCMRLRFO11,
  author       = {Matthew J. Clarkson and
                  Manuel Jorge Cardoso and
                  Marc Modat and
                  Gerard R. Ridgway and
                  Kelvin K. Leung and
                  Jonathan D. Rohrer and
                  Nick C. Fox and
                  S{\'{e}}bastien Ourselin},
  title        = {Cross-sectional analysis using voxel or surface based cortical thickness
                  methods: {A} comparison study},
  booktitle    = {Proceedings of the 8th {IEEE} International Symposium on Biomedical
                  Imaging: From Nano to Macro, {ISBI} 2011, March 30 - April 2, 2011,
                  Chicago, Illinois, {USA}},
  pages        = {381--384},
  publisher    = {{IEEE}},
  year         = {2011},
  url          = {https://doi.org/10.1109/ISBI.2011.5872428},
  doi          = {10.1109/ISBI.2011.5872428},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/ClarksonCMRLRFO11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/HanHMCMOH11,
  author       = {Lianghao Han and
                  John H. Hipwell and
                  Thomy Mertzanidou and
                  Timothy J. Carter and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin and
                  David J. Hawkes},
  title        = {A hybrid fem-based method for aligning prone and supine images for
                  image guided breast surgery},
  booktitle    = {Proceedings of the 8th {IEEE} International Symposium on Biomedical
                  Imaging: From Nano to Macro, {ISBI} 2011, March 30 - April 2, 2011,
                  Chicago, Illinois, {USA}},
  pages        = {1239--1242},
  publisher    = {{IEEE}},
  year         = {2011},
  url          = {https://doi.org/10.1109/ISBI.2011.5872626},
  doi          = {10.1109/ISBI.2011.5872626},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/HanHMCMOH11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/LeungBMRBFO11,
  author       = {Kelvin K. Leung and
                  Josephine Barnes and
                  Marc Modat and
                  Gerard R. Ridgway and
                  Jonathan W. Bartlett and
                  Nick C. Fox and
                  S{\'{e}}bastien Ourselin},
  title        = {Automated brain extraction using Multi-Atlas Propagation and Segmentation
                  {(MAPS)}},
  booktitle    = {Proceedings of the 8th {IEEE} International Symposium on Biomedical
                  Imaging: From Nano to Macro, {ISBI} 2011, March 30 - April 2, 2011,
                  Chicago, Illinois, {USA}},
  pages        = {2053--2056},
  publisher    = {{IEEE}},
  year         = {2011},
  url          = {https://doi.org/10.1109/ISBI.2011.5872816},
  doi          = {10.1109/ISBI.2011.5872816},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/LeungBMRBFO11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/CardosoMKMHRMO11,
  author       = {Manuel Jorge Cardoso and
                  Andrew Melbourne and
                  Giles S. Kendall and
                  Marc Modat and
                  Cornelia F. Hagmann and
                  Nicola J. Robertson and
                  Neil Marlow and
                  S{\'{e}}bastien Ourselin},
  editor       = {Gabor Fichtinger and
                  Anne L. Martel and
                  Terry M. Peters},
  title        = {Adaptive Neonate Brain Segmentation},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2011 - 14th International Conference, Toronto, Canada, September 18-22,
                  2011, Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {6893},
  pages        = {378--386},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-23626-6\_47},
  doi          = {10.1007/978-3-642-23626-6\_47},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/CardosoMKMHRMO11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/CardosoCMO11,
  author       = {Manuel Jorge Cardoso and
                  Matthew J. Clarkson and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin},
  editor       = {Gabor Fichtinger and
                  Anne L. Martel and
                  Terry M. Peters},
  title        = {Longitudinal Cortical Thickness Estimation Using Khalimsky's Cubic
                  Complex},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2011 - 14th International Conference, Toronto, Canada, September 18-22,
                  2011, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {6892},
  pages        = {467--475},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-23629-7\_57},
  doi          = {10.1007/978-3-642-23629-7\_57},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/CardosoCMO11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/CardosoCMTCO11,
  author       = {Manuel Jorge Cardoso and
                  Matthew J. Clarkson and
                  Marc Modat and
                  Hugues Talbot and
                  Michel Couprie and
                  S{\'{e}}bastien Ourselin},
  editor       = {Benoit M. Dawant and
                  David R. Haynor},
  title        = {Topologically correct cortical segmentation using Khalimsky's cubic
                  complex framework},
  booktitle    = {Medical Imaging 2011: Image Processing, Lake Buena Vista, Florida,
                  USA, February 14-16, 2011},
  series       = {{SPIE} Proceedings},
  volume       = {7962},
  pages        = {79620P},
  publisher    = {{SPIE}},
  year         = {2011},
  url          = {https://doi.org/10.1117/12.878190},
  doi          = {10.1117/12.878190},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/CardosoCMTCO11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/ModatRDCHAO11,
  author       = {Marc Modat and
                  Gerard R. Ridgway and
                  Pankaj Daga and
                  Manuel Jorge Cardoso and
                  David J. Hawkes and
                  John Ashburner and
                  S{\'{e}}bastien Ourselin},
  editor       = {Benoit M. Dawant and
                  David R. Haynor},
  title        = {Log-Euclidean free-form deformation},
  booktitle    = {Medical Imaging 2011: Image Processing, Lake Buena Vista, Florida,
                  USA, February 14-16, 2011},
  series       = {{SPIE} Proceedings},
  volume       = {7962},
  pages        = {79621Q},
  publisher    = {{SPIE}},
  year         = {2011},
  url          = {https://doi.org/10.1117/12.878189},
  doi          = {10.1117/12.878189},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/ModatRDCHAO11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmpb/ModatRTLBHFO10,
  author       = {Marc Modat and
                  Gerard R. Ridgway and
                  Zeike A. Taylor and
                  Manja Lehmann and
                  Josephine Barnes and
                  David J. Hawkes and
                  Nick C. Fox and
                  S{\'{e}}bastien Ourselin},
  title        = {Fast free-form deformation using graphics processing units},
  journal      = {Comput. Methods Programs Biomed.},
  volume       = {98},
  number       = {3},
  pages        = {278--284},
  year         = {2010},
  url          = {https://doi.org/10.1016/j.cmpb.2009.09.002},
  doi          = {10.1016/J.CMPB.2009.09.002},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cmpb/ModatRTLBHFO10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/LehmannDKMCOBF10,
  author       = {Manja Lehmann and
                  Abdel Douiri and
                  Lois G. Kim and
                  Marc Modat and
                  Dennis Chan and
                  S{\'{e}}bastien Ourselin and
                  Josephine Barnes and
                  Nick C. Fox},
  title        = {Atrophy patterns in Alzheimer's disease and semantic dementia: {A}
                  comparison of FreeSurfer and manual volumetric measurements},
  journal      = {NeuroImage},
  volume       = {49},
  number       = {3},
  pages        = {2264--2274},
  year         = {2010},
  url          = {https://doi.org/10.1016/j.neuroimage.2009.10.056},
  doi          = {10.1016/J.NEUROIMAGE.2009.10.056},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/LehmannDKMCOBF10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/RohrerRMOMFRW10,
  author       = {Jonathan D. Rohrer and
                  Gerard R. Ridgway and
                  Marc Modat and
                  S{\'{e}}bastien Ourselin and
                  Simon Mead and
                  Nick C. Fox and
                  Martin Rossor and
                  Jason D. Warren},
  title        = {Distinct profiles of brain atrophy in frontotemporal lobar degeneration
                  caused by progranulin and tau mutations},
  journal      = {NeuroImage},
  volume       = {53},
  number       = {3},
  pages        = {1070--1076},
  year         = {2010},
  url          = {https://doi.org/10.1016/j.neuroimage.2009.12.088},
  doi          = {10.1016/J.NEUROIMAGE.2009.12.088},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/neuroimage/RohrerRMOMFRW10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/ModatRHFO10,
  author       = {Marc Modat and
                  Gerard R. Ridgway and
                  David J. Hawkes and
                  Nick C. Fox and
                  S{\'{e}}bastien Ourselin},
  title        = {Nonrigid registration with differential bias correction using normalised
                  mutual information},
  booktitle    = {Proceedings of the 2010 {IEEE} International Symposium on Biomedical
                  Imaging: From Nano to Macro, Rotterdam, The Netherlands, 14-17 April,
                  2010},
  pages        = {356--359},
  publisher    = {{IEEE}},
  year         = {2010},
  url          = {https://doi.org/10.1109/ISBI.2010.5490337},
  doi          = {10.1109/ISBI.2010.5490337},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/ModatRHFO10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/CardosoCMRO10,
  author       = {Manuel Jorge Cardoso and
                  Matthew J. Clarkson and
                  Marc Modat and
                  Gerard R. Ridgway and
                  S{\'{e}}bastien Ourselin},
  title        = {Locally weighted Markov random fields for cortical segmentation},
  booktitle    = {Proceedings of the 2010 {IEEE} International Symposium on Biomedical
                  Imaging: From Nano to Macro, Rotterdam, The Netherlands, 14-17 April,
                  2010},
  pages        = {956--959},
  publisher    = {{IEEE}},
  year         = {2010},
  url          = {https://doi.org/10.1109/ISBI.2010.5490146},
  doi          = {10.1109/ISBI.2010.5490146},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/CardosoCMRO10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/RothMMBHOSHH10,
  author       = {Holger Roth and
                  Jamie McClelland and
                  Marc Modat and
                  Darren Boone and
                  Mingxing Hu and
                  S{\'{e}}bastien Ourselin and
                  Greg G. Slabaugh and
                  Steve Halligan and
                  David J. Hawkes},
  editor       = {Tianzi Jiang and
                  Nassir Navab and
                  Josien P. W. Pluim and
                  Max A. Viergever},
  title        = {Establishing Spatial Correspondence between the Inner Colon Surfaces
                  from Prone and Supine {CT} Colonography},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2010, 13th International Conference, Beijing, China, September 20-24,
                  2010, Proceedings, Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {6363},
  pages        = {497--504},
  publisher    = {Springer},
  year         = {2010},
  url          = {https://doi.org/10.1007/978-3-642-15711-0\_62},
  doi          = {10.1007/978-3-642-15711-0\_62},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/RothMMBHOSHH10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/ClarksonMMLRAFO10,
  author       = {Matthew J. Clarkson and
                  Ian B. Malone and
                  Marc Modat and
                  Kelvin K. Leung and
                  Natalie S. Ryan and
                  Daniel C. Alexander and
                  Nick C. Fox and
                  S{\'{e}}bastien Ourselin},
  editor       = {Tianzi Jiang and
                  Nassir Navab and
                  Josien P. W. Pluim and
                  Max A. Viergever},
  title        = {A Framework for Using Diffusion Weighted Imaging to Improve Cortical
                  Parcellation},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2010, 13th International Conference, Beijing, China, September 20-24,
                  2010, Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {6361},
  pages        = {534--541},
  publisher    = {Springer},
  year         = {2010},
  url          = {https://doi.org/10.1007/978-3-642-15705-9\_65},
  doi          = {10.1007/978-3-642-15705-9\_65},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/ClarksonMMLRAFO10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/ModatVRHFO10,
  author       = {Marc Modat and
                  Tom Vercauteren and
                  Gerard R. Ridgway and
                  David J. Hawkes and
                  Nick C. Fox and
                  S{\'{e}}bastien Ourselin},
  editor       = {Benoit M. Dawant and
                  David R. Haynor},
  title        = {Diffeomorphic demons using normalized mutual information, evaluation
                  on multimodal brain {MR} images},
  booktitle    = {Medical Imaging 2010: Image Processing, San Diego, California, USA,
                  February 14-16, 2010},
  series       = {{SPIE} Proceedings},
  volume       = {7623},
  pages        = {76232K},
  publisher    = {{SPIE}},
  year         = {2010},
  url          = {https://doi.org/10.1117/12.843962},
  doi          = {10.1117/12.843962},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/ModatVRHFO10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wbir/ModatTRBWHFO10,
  author       = {Marc Modat and
                  Zeike A. Taylor and
                  Gerard R. Ridgway and
                  Josephine Barnes and
                  Edward J. Wild and
                  David J. Hawkes and
                  Nick C. Fox and
                  S{\'{e}}bastien Ourselin},
  editor       = {Bernd Fischer and
                  Benoit M. Dawant and
                  Cristian Lorenz},
  title        = {Nonlinear Elastic Spline Registration: Evaluation with Longitudinal
                  Huntington's Disease Data},
  booktitle    = {Biomedical Image Registration, 4th International Workshop, {WBIR}
                  2010, L{\"{u}}beck, Germany, July 11-13, 2010. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6204},
  pages        = {128--139},
  publisher    = {Springer},
  year         = {2010},
  url          = {https://doi.org/10.1007/978-3-642-14366-3\_12},
  doi          = {10.1007/978-3-642-14366-3\_12},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/wbir/ModatTRBWHFO10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/CardosoCRMFO09,
  author       = {Manuel Jorge Cardoso and
                  Matthew J. Clarkson and
                  Gerard R. Ridgway and
                  Marc Modat and
                  Nick C. Fox and
                  S{\'{e}}bastien Ourselin},
  editor       = {Guang{-}Zhong Yang and
                  David J. Hawkes and
                  Daniel Rueckert and
                  J. Alison Noble and
                  Christopher J. Taylor},
  title        = {Improved Maximum a Posteriori Cortical Segmentation by Iterative Relaxation
                  of Priors},
  booktitle    = {Medical Image Computing and Computer-Assisted Intervention - {MICCAI}
                  2009, 12th International Conference, London, UK, September 20-24,
                  2009, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {5762},
  pages        = {441--449},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-04271-3\_54},
  doi          = {10.1007/978-3-642-04271-3\_54},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/CardosoCRMFO09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/ModatRTHFO09,
  author       = {Marc Modat and
                  Gerard R. Ridgway and
                  Zeike A. Taylor and
                  Daves J. Hawkes and
                  Nick C. Fox and
                  S{\'{e}}bastien Ourselin},
  editor       = {Josien P. W. Pluim and
                  Benoit M. Dawant},
  title        = {A parallel-friendly normalized mutual information gradient for free-form
                  registration},
  booktitle    = {Medical Imaging 2009: Image Processing, Lake Buena Vista (Orlando
                  Area), Florida, United States, 7-12 February 2009},
  series       = {{SPIE} Proceedings},
  volume       = {7259},
  pages        = {72590L},
  publisher    = {{SPIE}},
  year         = {2009},
  url          = {https://doi.org/10.1117/12.811588},
  doi          = {10.1117/12.811588},
  timestamp    = {Thu, 23 Jun 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miip/ModatRTHFO09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cars/MangSCMCPBJOBH08,
  author       = {Andreas Mang and
                  Julia A. Schnabel and
                  William R. Crum and
                  Marc Modat and
                  Oscar Camara{-}Rey and
                  Christoph Palm and
                  Gisele Brasil{-}Caseiras and
                  Hans Rolf J{\"{a}}ger and
                  S{\'{e}}bastien Ourselin and
                  Thorsten M. Buzug and
                  David J. Hawkes},
  title        = {Consistency of parametric registration in serial {MRI} studies of
                  brain tumor progression},
  journal      = {Int. J. Comput. Assist. Radiol. Surg.},
  volume       = {3},
  number       = {3-4},
  pages        = {201--211},
  year         = {2008},
  url          = {https://doi.org/10.1007/s11548-008-0234-5},
  doi          = {10.1007/S11548-008-0234-5},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/cars/MangSCMCPBJOBH08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/FrippBARMPJOMAEMCVRSO08,
  author       = {Jurgen Fripp and
                  Pierrick Bourgeat and
                  Oscar Acosta and
                  Parnesh Raniga and
                  Marc Modat and
                  Kerryn E. Pike and
                  Gareth Jones and
                  Graeme O'Keefe and
                  Colin L. Masters and
                  David Ames and
                  Kathryn A. Ellis and
                  Paul Maruff and
                  Jon Currie and
                  Victor Villemagne and
                  Christopher Rowe and
                  Olivier Salvado and
                  S{\'{e}}bastien Ourselin},
  title        = {Appearance modeling of \({}^{\mbox{11}}\)C PiB {PET} images: Characterizing
                  amyloid deposition in Alzheimer's disease, mild cognitive impairment
                  and healthy aging},
  journal      = {NeuroImage},
  volume       = {43},
  number       = {3},
  pages        = {430--439},
  year         = {2008},
  url          = {https://doi.org/10.1016/j.neuroimage.2008.07.053},
  doi          = {10.1016/J.NEUROIMAGE.2008.07.053},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/neuroimage/FrippBARMPJOMAEMCVRSO08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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