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ORCIDBibTeX records: Ion I. Mandoiu
@article{DBLP:journals/jcb/BansalMMPRSZ23,
author = {Mukul S. Bansal and
Ion I. Mandoiu and
Marmar Moussa and
Murray Patterson and
Sanguthevar Rajasekaran and
Pavel Skums and
Alexander Zelikovsky},
title = {Special Issue: 11th International Computational Advances in Bio and
Medical Sciences {(ICCABS} 2021)},
journal = {J. Comput. Biol.},
volume = {30},
number = {4},
pages = {363--365},
year = {2023},
url = {https://doi.org/10.1089/cmb.2023.29085.msb},
doi = {10.1089/CMB.2023.29085.MSB},
timestamp = {Mon, 29 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/BansalMMPRSZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SeesiASSAHKSM23,
author = {Sahar Al Seesi and
Anas Al{-}Okaily and
Tatiana Shcheglova and
Elham Sherafat and
Fahad Alqahtani and
Adam T. Hagymasi and
Anupinder Kaur and
Pramod Kumar Srivastava and
Ion I. Mandoiu},
title = {GeNeo: {A} Bioinformatics Toolbox for Genomics-Guided Neoepitope Prediction},
journal = {J. Comput. Biol.},
volume = {30},
number = {4},
pages = {538--551},
year = {2023},
url = {https://doi.org/10.1089/cmb.2022.0491},
doi = {10.1089/CMB.2022.0491},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SeesiASSAHKSM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/DharZMB22,
author = {Saurav Dhar and
Chengchen Zhang and
Ion I. Mandoiu and
Mukul S. Bansal},
title = {TNet: Transmission Network Inference Using Within-Host Strain Diversity
and its Application to Geographical Tracking of {COVID-19} Spread},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {1},
pages = {230--242},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3096455},
doi = {10.1109/TCBB.2021.3096455},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/DharZMB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/iccabs/2021,
editor = {Mukul S. Bansal and
Ion I. Mandoiu and
Marmar Moussa and
Murray Patterson and
Sanguthevar Rajasekaran and
Pavel Skums and
Alexander Zelikovsky},
title = {Computational Advances in Bio and Medical Sciences: 11th International
Conference, {ICCABS} 2021, Virtual Event, December 16-18, 2021, Revised
Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {13254},
publisher = {Springer International Publishing},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-17531-2},
doi = {10.1007/978-3-031-17531-2},
isbn = {978-3-031-17530-5},
timestamp = {Thu, 04 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/2021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Mandoiu0NRSZ21,
author = {Ion I. Mandoiu and
T. M. Murali and
Giri Narasimhan and
Sanguthevar Rajasekaran and
Pavel Skums and
Alexander Zelikovsky},
title = {Special Issue: 9th International Computational Advances in Bio and
Medical Sciences {(ICCABS} 2019)},
journal = {J. Comput. Biol.},
volume = {28},
number = {2},
pages = {115--116},
year = {2021},
url = {https://doi.org/10.1089/cmb.2021.29034.im},
doi = {10.1089/CMB.2021.29034.IM},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/Mandoiu0NRSZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MoussaM21,
author = {Marmar Moussa and
Ion I. Mandoiu},
title = {{SC1:} {A} Tool for Interactive Web-Based Single-Cell RNA-Seq Data
Analysis},
journal = {J. Comput. Biol.},
volume = {28},
number = {8},
pages = {820--841},
year = {2021},
url = {https://doi.org/10.1089/cmb.2021.0051},
doi = {10.1089/CMB.2021.0051},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/MoussaM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/RondelHSKMSMPPZ21,
author = {Filipp Rondel and
Roya Hosseini and
Bikram Sahoo and
Sergey Knyazev and
Igor Mandric and
Frank Stewart and
Ion I. Mandoiu and
Bogdan Pasaniuc and
Yuri Porozov and
Alexander Zelikovsky},
title = {Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic
Communities Using Metatranscriptomic Data},
journal = {J. Comput. Biol.},
volume = {28},
number = {8},
pages = {842--855},
year = {2021},
url = {https://doi.org/10.1089/cmb.2021.0053},
doi = {10.1089/CMB.2021.0053},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/RondelHSKMSMPPZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/JhaMRSZ21,
author = {Sumit Kumar Jha and
Ion I. Mandoiu and
Sanguthevar Rajasekaran and
Pavel Skums and
Alexander Zelikovsky},
title = {Special Issue: 10th International Computational Advances in Bio and
Medical Sciences {(ICCABS} 2020)},
journal = {J. Comput. Biol.},
volume = {28},
number = {11},
pages = {1033--1034},
year = {2021},
url = {https://doi.org/10.1089/cmb.2021.29048.skj},
doi = {10.1089/CMB.2021.29048.SKJ},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/JhaMRSZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/SledzieskiZMB21,
author = {Samuel Sledzieski and
Chengchen Zhang and
Ion I. Mandoiu and
Mukul S. Bansal},
title = {TreeFix-TP: Phylogenetic Error-Correction for Infectious Disease Transmission
Network Inference},
booktitle = {Biocomputing 2021: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2021},
publisher = {WorldScientific},
year = {2021},
url = {https://doi.org/10.1142/9789811232701\_0012},
doi = {10.1142/9789811232701\_0012},
timestamp = {Thu, 01 Apr 2021 17:03:34 +0200},
biburl = {https://dblp.org/rec/conf/psb/SledzieskiZMB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/iccabs/2020,
editor = {Sumit Kumar Jha and
Ion I. Mandoiu and
Sanguthevar Rajasekaran and
Pavel Skums and
Alex Zelikovsky},
title = {Computational Advances in Bio and Medical Sciences - 10th International
Conference, {ICCABS} 2020, Virtual Event, December 10-12, 2020, Revised
Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {12686},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-79290-9},
doi = {10.1007/978-3-030-79290-9},
isbn = {978-3-030-79289-3},
timestamp = {Tue, 20 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccabs/2020.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SherafatFM20,
author = {Elham Sherafat and
Jordan Force and
Ion I. Mandoiu},
title = {Semi-supervised learning for somatic variant calling and peptide identification
in personalized cancer immunotherapy},
journal = {{BMC} Bioinform.},
volume = {21-S},
number = {18},
pages = {498},
year = {2020},
url = {https://doi.org/10.1186/s12859-020-03813-x},
doi = {10.1186/S12859-020-03813-X},
timestamp = {Sat, 09 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SherafatFM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/AlqahtaniM20,
author = {Fahad Alqahtani and
Ion I. Mandoiu},
title = {Statistical Mitogenome Assembly with RepeaTs},
journal = {J. Comput. Biol.},
volume = {27},
number = {9},
pages = {1407--1421},
year = {2020},
url = {https://doi.org/10.1089/cmb.2019.0505},
doi = {10.1089/CMB.2019.0505},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/AlqahtaniM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/MoussaM20,
author = {Marmar Moussa and
Ion I. Mandoiu},
editor = {Sumit Kumar Jha and
Ion I. Mandoiu and
Sanguthevar Rajasekaran and
Pavel Skums and
Alex Zelikovsky},
title = {Computational Cell Cycle Analysis of Single Cell RNA-Seq Data},
booktitle = {Computational Advances in Bio and Medical Sciences - 10th International
Conference, {ICCABS} 2020, Virtual Event, December 10-12, 2020, Revised
Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {12686},
pages = {71--87},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-79290-9\_7},
doi = {10.1007/978-3-030-79290-9\_7},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccabs/MoussaM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/AlqahtaniM20,
author = {Fahad Alqahtani and
Ion I. Mandoiu},
editor = {Zhipeng Cai and
Ion I. Mandoiu and
Giri Narasimhan and
Pavel Skums and
Xuan Guo},
title = {Mitochondrial Haplogroup Assignment for High-Throughput Sequencing
Data from Single Individual and Mixed {DNA} Samples},
booktitle = {Bioinformatics Research and Applications - 16th International Symposium,
{ISBRA} 2020, Moscow, Russia, December 1-4, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12304},
pages = {1--12},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-57821-3\_1},
doi = {10.1007/978-3-030-57821-3\_1},
timestamp = {Wed, 26 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbra/AlqahtaniM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/DharZMB20,
author = {Saurav Dhar and
Chengchen Zhang and
Ion I. Mandoiu and
Mukul S. Bansal},
editor = {Zhipeng Cai and
Ion I. Mandoiu and
Giri Narasimhan and
Pavel Skums and
Xuan Guo},
title = {TNet: Phylogeny-Based Inference of Disease Transmission Networks Using
Within-Host Strain Diversity},
booktitle = {Bioinformatics Research and Applications - 16th International Symposium,
{ISBRA} 2020, Moscow, Russia, December 1-4, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12304},
pages = {203--216},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-57821-3\_18},
doi = {10.1007/978-3-030-57821-3\_18},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbra/DharZMB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/RondelHSKMSMPZ20,
author = {Filipp Rondel and
Akram Sadat Hosseini and
Bikram Sahoo and
Sergey Knyazev and
Igor Mandric and
Frank Stewart and
Ion I. Mandoiu and
Bogdan Pasaniuc and
Alex Zelikovsky},
editor = {Zhipeng Cai and
Ion I. Mandoiu and
Giri Narasimhan and
Pavel Skums and
Xuan Guo},
title = {Estimating Enzyme Participation in Metabolic Pathways for Microbial
Communities from RNA-seq Data},
booktitle = {Bioinformatics Research and Applications - 16th International Symposium,
{ISBRA} 2020, Moscow, Russia, December 1-4, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12304},
pages = {335--343},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-57821-3\_32},
doi = {10.1007/978-3-030-57821-3\_32},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbra/RondelHSKMSMPZ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/MoussaM20,
author = {Marmar Moussa and
Ion I. Mandoiu},
editor = {Zhipeng Cai and
Ion I. Mandoiu and
Giri Narasimhan and
Pavel Skums and
Xuan Guo},
title = {{SC1:} {A} Tool for Interactive Web-Based Single Cell RNA-Seq Data
Analysis},
booktitle = {Bioinformatics Research and Applications - 16th International Symposium,
{ISBRA} 2020, Moscow, Russia, December 1-4, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12304},
pages = {389--397},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-57821-3\_39},
doi = {10.1007/978-3-030-57821-3\_39},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbra/MoussaM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/iccabs/2019,
editor = {Ion I. Mandoiu and
T. M. Murali and
Giri Narasimhan and
Sanguthevar Rajasekaran and
Pavel Skums and
Alexander Zelikovsky},
title = {Computational Advances in Bio and Medical Sciences - 9th International
Conference, {ICCABS} 2019, Miami, FL, USA, November 15-17, 2019, Revised
Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {12029},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-46165-2},
doi = {10.1007/978-3-030-46165-2},
isbn = {978-3-030-46164-5},
timestamp = {Wed, 29 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccabs/2019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/isbra/2020,
editor = {Zhipeng Cai and
Ion I. Mandoiu and
Giri Narasimhan and
Pavel Skums and
Xuan Guo},
title = {Bioinformatics Research and Applications - 16th International Symposium,
{ISBRA} 2020, Moscow, Russia, December 1-4, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12304},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-57821-3},
doi = {10.1007/978-3-030-57821-3},
isbn = {978-3-030-57820-6},
timestamp = {Fri, 21 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbra/2020.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MoussaM19,
author = {Marmar Moussa and
Ion I. Mandoiu},
title = {Locality Sensitive Imputation for Single Cell RNA-Seq Data},
journal = {J. Comput. Biol.},
volume = {26},
number = {8},
pages = {822--835},
year = {2019},
url = {https://doi.org/10.1089/cmb.2018.0236},
doi = {10.1089/CMB.2018.0236},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/MoussaM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MandoiuSZ19,
author = {Ion I. Mandoiu and
Pavel Skums and
Alexander Zelikovsky},
title = {Guest Editors' Introduction to the Special Section on Bioinformatics
Research and Applications},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {16},
number = {4},
pages = {1362--1363},
year = {2019},
url = {https://doi.org/10.1109/TCBB.2019.2894215},
doi = {10.1109/TCBB.2019.2894215},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MandoiuSZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/KhudyakovMSZ19,
author = {Yury Khudyakov and
Ion I. Mandoiu and
Pavel Skums and
Alexander Zelikovsky},
editor = {Xinghua Mindy Shi and
Michael Buck and
Jian Ma and
Pierangelo Veltri},
title = {Workshop on Computational Advances in Molecular Epidemiology},
booktitle = {Proceedings of the 10th {ACM} International Conference on Bioinformatics,
Computational Biology and Health Informatics, {BCB} 2019, Niagara
Falls, NY, USA, September 7-10, 2019},
pages = {561},
publisher = {{ACM}},
year = {2019},
url = {https://doi.org/10.1145/3307339.3343859},
doi = {10.1145/3307339.3343859},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/KhudyakovMSZ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/AlqahtaniM19,
author = {Fahad Alqahtani and
Ion I. Mandoiu},
editor = {Ion I. Mandoiu and
T. M. Murali and
Giri Narasimhan and
Sanguthevar Rajasekaran and
Pavel Skums and
Alexander Zelikovsky},
title = {{SMART2:} Multi-library Statistical Mitogenome Assembly with Repeats},
booktitle = {Computational Advances in Bio and Medical Sciences - 9th International
Conference, {ICCABS} 2019, Miami, FL, USA, November 15-17, 2019, Revised
Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {12029},
pages = {184--198},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-46165-2\_15},
doi = {10.1007/978-3-030-46165-2\_15},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccabs/AlqahtaniM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerjpre/LaehnemannKSMHR19,
author = {David Laehnemann and
Johannes K{\"{o}}ster and
Ewa Szczurek and
Davis J. McCarthy and
Stephanie C. Hicks and
Mark D. Robinson and
Catalina A. Vallejos and
Niko Beerenwinkel and
Kieran R. Campbell and
Ahmed Mahfouz and
Luca Pinello and
Pavel Skums and
Alexandros Stamatakis and
Camille Stephan{-}Otto Attolini and
Samuel Aparicio and
Jasmijn A. Baaijens and
Marleen Balvert and
Buys de Barbanson and
Antonio Cappuccio and
Giacomo Corleone and
Bas E. Dutilh and
Maria Florescu and
Victor Guryev and
Rens Holmer and
Katharina Jahn and
Thamar Jessurun Lobo and
Emma M. Keizer and
Indu Khatri and
Szymon M. Kielbasa and
Jan O. Korbel and
Alexey M. Kozlov and
Tzu{-}Hao Kuo and
Boudewijn P. F. Lelieveldt and
Ion I. Mandoiu and
John C. Marioni and
Tobias Marschall and
Felix M{\"{o}}lder and
Amir Niknejad and
Lukasz Raczkowski and
Marcel J. T. Reinders and
Jeroen de Ridder and
Antoine{-}Emmanuel Saliba and
Antonios Somarakis and
Oliver Stegle and
Fabian J. Theis and
Huan Yang and
Alex Zelikovsky and
Alice C. McHardy and
Benjamin J. Raphael and
Sohrab P. Shah and
Alexander Sch{\"{o}}nhuth},
title = {12 Grand Challenges in Single-Cell Data Science},
journal = {PeerJ Prepr.},
volume = {7},
pages = {e27885},
year = {2019},
url = {https://doi.org/10.7287/peerj.preprints.27885v3},
doi = {10.7287/PEERJ.PREPRINTS.27885V3},
timestamp = {Thu, 09 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/peerjpre/LaehnemannKSMHR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/KhudyakovMSZ18,
author = {Yury Khudyakov and
Ion I. Mandoiu and
Pavel Skums and
Alexander Zelikovsky},
editor = {Amarda Shehu and
Cathy H. Wu and
Christina Boucher and
Jing Li and
Hongfang Liu and
Mihai Pop},
title = {{ACM-BCB} 2018 Computational Advances in Molecular Epidemiology {(CAME)}
Chairs' Welcome},
booktitle = {Proceedings of the 2018 {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2018, Washington,
DC, USA, August 29 - September 01, 2018},
pages = {574},
publisher = {{ACM}},
year = {2018},
url = {https://doi.org/10.1145/3233547.3233670},
doi = {10.1145/3233547.3233670},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/KhudyakovMSZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/AlqahtaniM18,
author = {Fahad Alqahtani and
Ion I. Mandoiu},
title = {Statistical Mitogenome Assembly with Repeats},
booktitle = {8th {IEEE} International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2018, Las Vegas, NV, USA, October 18-20,
2018},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.org/10.1109/ICCABS.2018.8542062},
doi = {10.1109/ICCABS.2018.8542062},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/AlqahtaniM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/MoussaM18,
author = {Marmar Moussa and
Ion I. Mandoiu},
title = {{SC1:} {A} web-based single cell RNA-seq analysis pipeline},
booktitle = {8th {IEEE} International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2018, Las Vegas, NV, USA, October 18-20,
2018},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.org/10.1109/ICCABS.2018.8542088},
doi = {10.1109/ICCABS.2018.8542088},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/MoussaM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/MoussaM18,
author = {Marmar Moussa and
Ion I. Mandoiu},
editor = {Fa Zhang and
Zhipeng Cai and
Pavel Skums and
Shihua Zhang},
title = {Locality Sensitive Imputation for Single-Cell RNA-Seq Data},
booktitle = {Bioinformatics Research and Applications - 14th International Symposium,
{ISBRA} 2018, Beijing, China, June 8-11, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10847},
pages = {347--360},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-319-94968-0\_33},
doi = {10.1007/978-3-319-94968-0\_33},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbra/MoussaM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/tf/18/KahngMZ18,
author = {Andrew B. Kahng and
Ion I. Mandoiu and
Alexander Zelikovsky},
editor = {Teofilo F. Gonzalez},
title = {Practical Approximations of Steiner Trees in Uniform Orientation Metrics},
booktitle = {Handbook of Approximation Algorithms and Metaheuristics, Second Edition,
Volume 1: Methologies and Traditional Applications},
pages = {657--669},
publisher = {Chapman and Hall/CRC},
year = {2018},
url = {https://doi.org/10.1201/9781351236423-37},
doi = {10.1201/9781351236423-37},
timestamp = {Mon, 28 Oct 2019 16:49:19 +0100},
biburl = {https://dblp.org/rec/books/tf/18/KahngMZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/tf/18/MandoiuOZ18,
author = {Ion I. Mandoiu and
Alex Olshevsky and
Alexander Zelikovsky},
editor = {Teofilo F. Gonzalez},
title = {QoS Multimedia Multicast Routing},
booktitle = {Handbook of Approximation Algorithms and Metaheuristics, Second Edition,
Volume 2: Contemporary and Emerging Applications},
publisher = {Chapman and Hall/CRC},
year = {2018},
timestamp = {Mon, 28 Oct 2019 16:49:19 +0100},
biburl = {https://dblp.org/rec/books/tf/18/MandoiuOZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MandricTSSZM17,
author = {Igor Mandric and
Yvette Temate{-}Tiagueu and
Tatiana Shcheglova and
Sahar Al Seesi and
Alex Zelikovsky and
Ion I. Mandoiu},
title = {Fast bootstrapping-based estimation of confidence intervals of expression
levels and differential expression from RNA-Seq data},
journal = {Bioinform.},
volume = {33},
number = {20},
pages = {3302--3304},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx365},
doi = {10.1093/BIOINFORMATICS/BTX365},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MandricTSSZM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GerasimovZMI17,
author = {Ekaterina Gerasimov and
Alex Zelikovsky and
Ion I. Mandoiu and
Yurij Ionov},
title = {Identification of cancer-specific motifs in mimotope profiles of serum
antibody repertoire},
journal = {{BMC} Bioinform.},
volume = {18},
number = {8},
pages = {244:1--244:6},
year = {2017},
url = {https://doi.org/10.1186/s12859-017-1661-5},
doi = {10.1186/S12859-017-1661-5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GerasimovZMI17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HarrisonMZ17,
author = {Robert W. Harrison and
Ion I. Mandoiu and
Alexander Zelikovsky},
title = {Guest Editors' Introduction to the Special Section on Bioinformatics
Research and Applications},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {14},
number = {3},
pages = {576--577},
year = {2017},
url = {https://doi.org/10.1109/TCBB.2017.2673738},
doi = {10.1109/TCBB.2017.2673738},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HarrisonMZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/KhudyakovMSZ17,
author = {Yury Khudyakov and
Ion I. Mandoiu and
Pavel Skums and
Alexander Zelikovsky},
editor = {Nurit Haspel and
Lenore J. Cowen and
Amarda Shehu and
Tamer Kahveci and
Giuseppe Pozzi},
title = {{CAME} 2017: 6th Workshop on Computational Advances in Molecular Epidemiology},
booktitle = {Proceedings of the 8th {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2017, Boston,
MA, USA, August 20-23, 2017},
pages = {775},
publisher = {{ACM}},
year = {2017},
url = {https://doi.org/10.1145/3107411.3108168},
doi = {10.1145/3107411.3108168},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/KhudyakovMSZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/MandricKPSMZ17,
author = {Igor Mandric and
Sergey Knyazev and
Cory Padilla and
Frank Stewart and
Ion I. Mandoiu and
Alex Zelikovsky},
editor = {Zhipeng Cai and
Ovidiu Daescu and
Min Li},
title = {Metabolic Analysis of Metatranscriptomic Data from Planktonic Communities},
booktitle = {Bioinformatics Research and Applications - 13th International Symposium,
{ISBRA} 2017, Honolulu, HI, USA, May 29 - June 2, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10330},
pages = {396--402},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-59575-7\_41},
doi = {10.1007/978-3-319-59575-7\_41},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbra/MandricKPSMZ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/DaddioM16,
author = {Tyler Daddio and
Ion I. Mandoiu},
title = {Pairing {T} Cell Receptor {\(\alpha\)} and {\(\beta\)} sequences using
pooling and min-cost flows},
booktitle = {6th {IEEE} International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2016, Atlanta, GA, USA, October 13-15,
2016},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/ICCABS.2016.7802789},
doi = {10.1109/ICCABS.2016.7802789},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/DaddioM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SkumsAGRMCDZK15,
author = {Pavel Skums and
Alexander Artyomenko and
Olga Glebova and
Sumathi Ramachandran and
Ion I. Mandoiu and
David S. Campo and
Zoya Dimitrova and
Alex Zelikovsky and
Yuri Khudyakov},
title = {Computational framework for next-generation sequencing of heterogeneous
viral populations using combinatorial pooling},
journal = {Bioinform.},
volume = {31},
number = {5},
pages = {682--690},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu726},
doi = {10.1093/BIOINFORMATICS/BTU726},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SkumsAGRMCDZK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/HamdallaRGM15,
author = {Mai Hamdalla and
Sanguthevar Rajasekaran and
David F. Grant and
Ion I. Mandoiu},
title = {Metabolic Pathway Predictions for Metabolomics: {A} Molecular Structure
Matching Approach},
journal = {J. Chem. Inf. Model.},
volume = {55},
number = {3},
pages = {709--718},
year = {2015},
url = {https://doi.org/10.1021/ci500517v},
doi = {10.1021/CI500517V},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/HamdallaRGM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/NenastyevaZIM15,
author = {Ekaterina Nenastyeva and
Alex Zelikovsky and
Yurij Ionov and
Ion I. Mandoiu},
title = {Identification of cancer-specific motifs in mimotope profiles of serum
antibody repertoire},
booktitle = {5th {IEEE} International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2015, Miami, FL, USA, October 15-17,
2015},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/ICCABS.2015.7344724},
doi = {10.1109/ICCABS.2015.7344724},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/NenastyevaZIM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/isbra/2015,
editor = {Robert W. Harrison and
Yaohang Li and
Ion I. Mandoiu},
title = {Bioinformatics Research and Applications - 11th International Symposium,
{ISBRA} 2015, Norfolk, VA, USA, June 7-10, 2015 Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9096},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-19048-8},
doi = {10.1007/978-3-319-19048-8},
isbn = {978-3-319-19047-1},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbra/2015.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HemphillLLMN14,
author = {Edward Hemphill and
James Lindsay and
Chih Lee and
Ion I. Mandoiu and
Craig E. Nelson},
title = {Feature selection and classifier performance on diverse bio- logical
datasets},
journal = {{BMC} Bioinform.},
volume = {15},
number = {{S-13}},
pages = {S4},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-S13-S4},
doi = {10.1186/1471-2105-15-S13-S4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HemphillLLMN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LindsaySMZ14,
author = {James Lindsay and
Hamed Salooti and
Ion I. Mandoiu and
Alexander Zelikovsky},
title = {ILP-based maximum likelihood genome scaffolding},
journal = {{BMC} Bioinform.},
volume = {15},
number = {{S-9}},
pages = {S9},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-S9-S9},
doi = {10.1186/1471-2105-15-S9-S9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LindsaySMZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/CaciulaGAMLMZ14,
author = {Adrian Caciula and
Olga Glebova and
Alexander Artyomenko and
Serghei Mangul and
James Lindsay and
Ion I. Mandoiu and
Alex Zelikovsky},
title = {Deterministic regression algorithm for transcriptome frequency estimation},
booktitle = {{IEEE} 4th International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2014, Miami, FL, USA, June 2-4, 2014},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/ICCABS.2014.6863946},
doi = {10.1109/ICCABS.2014.6863946},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/CaciulaGAMLMZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/MandricLMZ14,
author = {Igor Mandric and
James Lindsay and
Ion I. Mandoiu and
Alex Zelikovsky},
title = {{SILP3:} Maximum likelihood approach to scaffolding},
booktitle = {{IEEE} 4th International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2014, Miami, FL, USA, June 2-4, 2014},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/ICCABS.2014.6863940},
doi = {10.1109/ICCABS.2014.6863940},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/MandricLMZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SkumsMATMKZ13,
author = {Pavel Skums and
Nicholas Mancuso and
Alexander Artyomenko and
Bassam Tork and
Ion I. Mandoiu and
Yuri Khudyakov and
Alex Zelikovsky},
title = {Reconstruction of viral population structure from next-generation
sequencing data using multicommodity flows},
journal = {{BMC} Bioinform.},
volume = {14},
number = {{S-9}},
pages = {S2},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-S9-S2},
doi = {10.1186/1471-2105-14-S9-S2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SkumsMATMKZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/HamdallaMHRG13,
author = {Mai Hamdalla and
Ion I. Mandoiu and
Dennis W. Hill and
Sanguthevar Rajasekaran and
David F. Grant},
title = {BioSM: Metabolomics Tool for Identifying Endogenous Mammalian Biochemical
Structures in Chemical Structure Space},
journal = {J. Chem. Inf. Model.},
volume = {53},
number = {3},
pages = {601--612},
year = {2013},
url = {https://doi.org/10.1021/ci300512q},
doi = {10.1021/CI300512Q},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/HamdallaMHRG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/MenikarachchiHHMG13,
author = {Lochana C. Menikarachchi and
Dennis W. Hill and
Mai Hamdalla and
Ion I. Mandoiu and
David F. Grant},
title = {In Silico Enzymatic Synthesis of a 400 000 Compound Biochemical Database
for Nontargeted Metabolomics},
journal = {J. Chem. Inf. Model.},
volume = {53},
number = {9},
pages = {2483--2492},
year = {2013},
url = {https://doi.org/10.1021/ci400368v},
doi = {10.1021/CI400368V},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/MenikarachchiHHMG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MandoiuWZ13,
author = {Ion I. Mandoiu and
Jianxin Wang and
Alexander Zelikovsky},
title = {Guest Editors' introduction to the special section on bioinformatics
research and applications},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {10},
number = {6},
pages = {1345--1346},
year = {2013},
url = {https://doi.org/10.1109/TCBB.2013.189},
doi = {10.1109/TCBB.2013.189},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MandoiuWZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/ArtyomenkoMZSM13,
author = {Alexander Artyomenko and
Nicholas Mancuso and
Alex Zelikovsky and
Pavel Skums and
Ion I. Mandoiu},
title = {kGEM: An EM-based algorithm for local reconstruction of viral quasispecies},
booktitle = {{IEEE} 3rd International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2013, New Orleans, LA, USA, June 12-14,
2013},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/ICCABS.2013.6629226},
doi = {10.1109/ICCABS.2013.6629226},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/ArtyomenkoMZSM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/CaciulaZMLM13,
author = {Adrian Caciula and
Alex Zelikovsky and
Serghei Mangul and
James Lindsay and
Ion I. Mandoiu},
title = {Monte-Carlo Regression algorithm for isoform frequency estimation
from RNA-Seq data},
booktitle = {{IEEE} 3rd International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2013, New Orleans, LA, USA, June 12-14,
2013},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/ICCABS.2013.6629228},
doi = {10.1109/ICCABS.2013.6629228},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/CaciulaZMLM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/IlieZM13,
author = {Gabriel Ilie and
Alex Zelikovsky and
Ion I. Mandoiu},
title = {Reference assisted nucleic acid sequence reconstruction from mass
spectrometry data},
booktitle = {{IEEE} 3rd International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2013, New Orleans, LA, USA, June 12-14,
2013},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/ICCABS.2013.6629232},
doi = {10.1109/ICCABS.2013.6629232},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/IlieZM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/LindsayNM13,
author = {James Lindsay and
Craig E. Nelson and
Ion I. Mandoiu},
title = {Towards whole transcriptome deconvolution using single-cell data},
booktitle = {{IEEE} 3rd International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2013, New Orleans, LA, USA, June 12-14,
2013},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/ICCABS.2013.6629234},
doi = {10.1109/ICCABS.2013.6629234},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/LindsayNM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/MancusoAZSM13,
author = {Nicholas Mancuso and
Alexander Artyomenko and
Alex Zelikovsky and
Pavel Skums and
Ion I. Mandoiu},
title = {Estimation of viral population structure from amplicon-based reads},
booktitle = {{IEEE} 3rd International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2013, New Orleans, LA, USA, June 12-14,
2013},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/ICCABS.2013.6629224},
doi = {10.1109/ICCABS.2013.6629224},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/MancusoAZSM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/MangulSMCZB13,
author = {Serghei Mangul and
Sahar Al Seesi and
Ion I. Mandoiu and
Adrian Caciula and
Alex Zelikovsky and
Dumitru Brinza},
title = {Transcriptome assembly and quantification from Ion Torrent RNA-Seq
data},
booktitle = {{IEEE} 3rd International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2013, New Orleans, LA, USA, June 12-14,
2013},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/ICCABS.2013.6629235},
doi = {10.1109/ICCABS.2013.6629235},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/MangulSMCZB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/SkumsGZMK13,
author = {Pavel Skums and
Olga Glebova and
Alex Zelikovsky and
Ion I. Mandoiu and
Yuri Khudyakov},
title = {Optimizing pooling strategies for the massive next-generation sequencing
of viral samples},
booktitle = {{IEEE} 3rd International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2013, New Orleans, LA, USA, June 12-14,
2013},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/ICCABS.2013.6629230},
doi = {10.1109/ICCABS.2013.6629230},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/SkumsGZMK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenMSWZ12,
author = {Jianer Chen and
Ion I. Mandoiu and
Raj Sunderraman and
Jianxin Wang and
Alexander Zelikovsky},
title = {Guest Editors' Introduction},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-10}},
pages = {S1},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S10-S1},
doi = {10.1186/1471-2105-13-S10-S1},
timestamp = {Fri, 21 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenMSWZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MangulCBMZ12,
author = {Serghei Mangul and
Adrian Caciula and
Dumitru Brinza and
Ion I. Mandoiu and
Alex Zelikovsky},
title = {{TRIP:} a method for novel transcript reconstruction from paired-end
RNA-seq reads},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-18}},
pages = {A11},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S18-A11},
doi = {10.1186/1471-2105-13-S18-A11},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MangulCBMZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/MancusoTSGMZ12,
author = {Nicholas Mancuso and
Bassam Tork and
Pavel Skums and
Lilia Ganova{-}Raeva and
Ion I. Mandoiu and
Alex Zelikovsky},
title = {Reconstructing viral quasispecies from {NGS} amplicon reads},
journal = {Silico Biol.},
volume = {11},
number = {5-6},
pages = {237--249},
year = {2012},
url = {https://doi.org/10.3233/ISB-2012-0458},
doi = {10.3233/ISB-2012-0458},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/MancusoTSGMZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/MangulCGMZ12,
author = {Serghei Mangul and
Adrian Caciula and
Olga Glebova and
Ion I. Mandoiu and
Alex Zelikovsky},
title = {Improved transcriptome quantification and reconstruction from RNA-Seq
reads using partial annotations},
journal = {Silico Biol.},
volume = {11},
number = {5-6},
pages = {251--261},
year = {2012},
url = {https://doi.org/10.3233/ISB-2012-0459},
doi = {10.3233/ISB-2012-0459},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/MangulCGMZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LindsaySZM12,
author = {James Lindsay and
Hamed Salooti and
Alexander Zelikovsky and
Ion I. Mandoiu},
editor = {Sanjay Ranka and
Tamer Kahveci and
Mona Singh},
title = {Scalable genome scaffolding using integer linear programming},
booktitle = {{ACM} International Conference on Bioinformatics, Computational Biology
and Biomedicine, BCB' 12, Orlando, FL, {USA} - October 08 - 10, 2012},
pages = {377--383},
publisher = {{ACM}},
year = {2012},
url = {https://doi.org/10.1145/2382936.2382984},
doi = {10.1145/2382936.2382984},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/LindsaySZM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/HamdallaGMHRA12,
author = {Mai Hamdalla and
David F. Grant and
Ion I. Mandoiu and
Dennis W. Hill and
Sanguthevar Rajasekaran and
Reda A. Ammar},
editor = {Sorin Istrail and
Ion I. Mandoiu and
Mihai Pop and
Sanguthevar Rajasekaran and
John L. Spouge},
title = {The use of graph matching algorithms to identify biochemical substructures
in synthetic chemical compounds: Application to metabolomics},
booktitle = {{IEEE} 2nd International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2012, Las Vegas, NV, USA, February
23-25, 2012},
pages = {1--6},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/ICCABS.2012.6182637},
doi = {10.1109/ICCABS.2012.6182637},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/HamdallaGMHRA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/LindsayMSZ12,
author = {James Lindsay and
Ion I. Mandoiu and
Hamed Salooti and
Alexander Zelikovsky},
editor = {Sorin Istrail and
Ion I. Mandoiu and
Mihai Pop and
Sanguthevar Rajasekaran and
John L. Spouge},
title = {Poster: Accurate scaffolding of large genomes using integer programming
and Non-Serial Dynamic Programming},
booktitle = {{IEEE} 2nd International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2012, Las Vegas, NV, USA, February
23-25, 2012},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/ICCABS.2012.6182653},
doi = {10.1109/ICCABS.2012.6182653},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/LindsayMSZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/MancusoTSGMZ12,
author = {Nicholas Mancuso and
Bassam Tork and
Pavel Skums and
Lilia Ganova{-}Raeva and
Ion I. Mandoiu and
Alexander Zelikovsky},
editor = {Sorin Istrail and
Ion I. Mandoiu and
Mihai Pop and
Sanguthevar Rajasekaran and
John L. Spouge},
title = {Workshop: {A} maximum likelihood method for quasispecies spectrum
assembly},
booktitle = {{IEEE} 2nd International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2012, Las Vegas, NV, USA, February
23-25, 2012},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/ICCABS.2012.6182672},
doi = {10.1109/ICCABS.2012.6182672},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/MancusoTSGMZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/MangulCMZ12,
author = {Serghei Mangul and
Adrian Caciula and
Ion I. Mandoiu and
Alexander Zelikovsky},
editor = {Sorin Istrail and
Ion I. Mandoiu and
Mihai Pop and
Sanguthevar Rajasekaran and
John L. Spouge},
title = {Workshop: Novel transcript reconstruction from paired-end RNA-Seq
reads using fragment length distribution},
booktitle = {{IEEE} 2nd International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2012, Las Vegas, NV, USA, February
23-25, 2012},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/ICCABS.2012.6182673},
doi = {10.1109/ICCABS.2012.6182673},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/MangulCMZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/ONeillMKOWBTMZ12,
author = {Rachel J. O'Neill and
Ion I. Mandoiu and
Mazhar I. Khan and
Craig Obergfell and
Hongjun Wang and
Andrew Bligh and
Bassam Tork and
Nicholas Mancuso and
Alexander Zelikovsky},
editor = {Sorin Istrail and
Ion I. Mandoiu and
Mihai Pop and
Sanguthevar Rajasekaran and
John L. Spouge},
title = {Workshop: Bioinformatics methods for reconstruction of Infectious
Bronchitis Virus quasispecies from next generation sequencing data},
booktitle = {{IEEE} 2nd International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2012, Las Vegas, NV, USA, February
23-25, 2012},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/ICCABS.2012.6182674},
doi = {10.1109/ICCABS.2012.6182674},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/ONeillMKOWBTMZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/SeesiM12,
author = {Sahar Al Seesi and
Ion I. Mandoiu},
editor = {Sorin Istrail and
Ion I. Mandoiu and
Mihai Pop and
Sanguthevar Rajasekaran and
John L. Spouge},
title = {Workshop: Inference of allele specific expression levels from RNA-Seq
data},
booktitle = {{IEEE} 2nd International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2012, Las Vegas, NV, USA, February
23-25, 2012},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/ICCABS.2012.6182666},
doi = {10.1109/ICCABS.2012.6182666},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/SeesiM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/iccabs/2012,
editor = {Sorin Istrail and
Ion I. Mandoiu and
Mihai Pop and
Sanguthevar Rajasekaran and
John L. Spouge},
title = {{IEEE} 2nd International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2012, Las Vegas, NV, USA, February
23-25, 2012},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://ieeexplore.ieee.org/xpl/conhome/6175765/proceeding},
isbn = {978-1-4673-1320-9},
timestamp = {Wed, 16 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccabs/2012.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/isbra/2012,
editor = {Leonidas G. Bleris and
Ion I. Mandoiu and
Russell Schwartz and
Jianxin Wang},
title = {Bioinformatics Research and Applications - 8th International Symposium,
{ISBRA} 2012, Dallas, TX, USA, May 21-23, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7292},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-30191-9},
doi = {10.1007/978-3-642-30191-9},
isbn = {978-3-642-30190-2},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbra/2012.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/NicolaeMMZ11,
author = {Marius Nicolae and
Serghei Mangul and
Ion I. Mandoiu and
Alex Zelikovsky},
title = {Estimation of alternative splicing isoform frequencies from RNA-Seq
data},
journal = {Algorithms Mol. Biol.},
volume = {6},
pages = {9},
year = {2011},
url = {https://doi.org/10.1186/1748-7188-6-9},
doi = {10.1186/1748-7188-6-9},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/NicolaeMMZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DuitamaKDHWM11,
author = {Jorge Duitama and
Justin Kennedy and
Sanjiv Dinakar and
Y{\"{o}}zen Hern{\'{a}}ndez and
Yufeng Wu and
Ion I. Mandoiu},
title = {Linkage disequilibrium based genotype calling from low-coverage shotgun
sequencing reads},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-1}},
pages = {S53},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S1-S53},
doi = {10.1186/1471-2105-12-S1-S53},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DuitamaKDHWM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AstrovskayaTMWMBZ11,
author = {Irina Astrovskaya and
Bassam Tork and
Serghei Mangul and
Kelly Westbrooks and
Ion I. Mandoiu and
Peter Balfe and
Alex Zelikovsky},
title = {Inferring viral quasispecies spectra from 454 pyrosequencing reads},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-6}},
pages = {S1},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S6-S1},
doi = {10.1186/1471-2105-12-S6-S1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AstrovskayaTMWMBZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/informs/PasaniucGMZ11,
author = {Bogdan Pasaniuc and
Robert S. Garfinkel and
Ion I. Mandoiu and
Alexander Zelikovsky},
title = {Optimal Testing of Digital Microfluidic Biochips},
journal = {{INFORMS} J. Comput.},
volume = {23},
number = {4},
pages = {518--529},
year = {2011},
url = {https://doi.org/10.1287/ijoc.1100.0422},
doi = {10.1287/IJOC.1100.0422},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/informs/PasaniucGMZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/MancusoTSMZ11,
author = {Nicholas Mancuso and
Bassam Tork and
Pavel Skums and
Ion I. Mandoiu and
Alexander Zelikovsky},
title = {Viral quasispecies reconstruction from amplicon 454 pyrosequencing
reads},
booktitle = {2011 {IEEE} International Conference on Bioinformatics and Biomedicine
Workshops, {BIBMW} 2011, Atlanta, GA, USA, November 12-15, 2011},
pages = {94--101},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/BIBMW.2011.6112360},
doi = {10.1109/BIBMW.2011.6112360},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/MancusoTSMZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/MangulCMZ11,
author = {Serghei Mangul and
Adrian Caciula and
Ion I. Mandoiu and
Alexander Zelikovsky},
title = {RNA-Seq based discovery and reconstruction of unannotated transcripts
in partially annotated genomes},
booktitle = {2011 {IEEE} International Conference on Bioinformatics and Biomedicine
Workshops, {BIBMW} 2011, Atlanta, GA, USA, November 12-15, 2011},
pages = {118--123},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/BIBMW.2011.6112363},
doi = {10.1109/BIBMW.2011.6112363},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/MangulCMZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/DuitamaSM11,
author = {Jorge Duitama and
Pramod Kumar Srivastava and
Ion I. Mandoiu},
editor = {Ion I. Mandoiu and
Satoru Miyano and
Teresa M. Przytycka and
Sanguthevar Rajasekaran},
title = {Towards accurate detection and genotyping of expressed variants from
whole transcriptome sequencing data},
booktitle = {{IEEE} 1st International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2011, Orlando, FL, USA, February 3-5,
2011},
pages = {87--92},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/ICCABS.2011.5729949},
doi = {10.1109/ICCABS.2011.5729949},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/DuitamaSM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/AstrovskayaTMWMBZ11,
author = {Irina Astrovskaya and
Bassam Tork and
Serghei Mangul and
Kelly Westbrooks and
Ion I. Mandoiu and
Peter Balfe and
Alexander Zelikovsky},
editor = {Ion I. Mandoiu and
Satoru Miyano and
Teresa M. Przytycka and
Sanguthevar Rajasekaran},
title = {Poster: ViSpA: Viral spectrum assembling method},
booktitle = {{IEEE} 1st International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2011, Orlando, FL, USA, February 3-5,
2011},
pages = {234},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/ICCABS.2011.5729888},
doi = {10.1109/ICCABS.2011.5729888},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/AstrovskayaTMWMBZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/LindsayZFWMOSBZ11,
author = {James Lindsay and
J. Zhang and
T. Farnham and
Y. Wu and
Ion I. Mandoiu and
Rachel J. O'Neill and
Hamed Salooti and
E. Bullwinkel and
Alexander Zelikovsky},
editor = {Ion I. Mandoiu and
Satoru Miyano and
Teresa M. Przytycka and
Sanguthevar Rajasekaran},
title = {Poster: Scaffolding draft genomes using paired sequencing data},
booktitle = {{IEEE} 1st International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2011, Orlando, FL, USA, February 3-5,
2011},
pages = {252},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/ICCABS.2011.5729905},
doi = {10.1109/ICCABS.2011.5729905},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/LindsayZFWMOSBZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/NicolaeM11,
author = {Marius Nicolae and
Ion I. Mandoiu},
editor = {Ion I. Mandoiu and
Satoru Miyano and
Teresa M. Przytycka and
Sanguthevar Rajasekaran},
title = {Poster: Empirical comparison of protocols for sequencing-based gene
and isoform expression profiling},
booktitle = {{IEEE} 1st International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2011, Orlando, FL, USA, February 3-5,
2011},
pages = {256},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/ICCABS.2011.5729909},
doi = {10.1109/ICCABS.2011.5729909},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/NicolaeM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/ONeillLCSHMP11,
author = {Rachel J. O'Neill and
James Lindsay and
Dawn Carone and
Sahar Al Seesi and
Thomas Heider and
Ion I. Mandoiu and
Andrew Pask},
editor = {Ion I. Mandoiu and
Satoru Miyano and
Teresa M. Przytycka and
Sanguthevar Rajasekaran},
title = {Workshop: The utility of next generation sequencing for genome scale
studies},
booktitle = {{IEEE} 1st International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2011, Orlando, FL, USA, February 3-5,
2011},
pages = {272},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/ICCABS.2011.5729926},
doi = {10.1109/ICCABS.2011.5729926},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/ONeillLCSHMP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/NicolaeM11,
author = {Marius Nicolae and
Ion I. Mandoiu},
editor = {Jianer Chen and
Jianxin Wang and
Alexander Zelikovsky},
title = {Accurate Estimation of Gene Expression Levels from {DGE} Sequencing
Data},
booktitle = {Bioinformatics Research and Applications - 7th International Symposium,
{ISBRA} 2011, Changsha, China, May 27-29, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6674},
pages = {392--403},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-21260-4\_37},
doi = {10.1007/978-3-642-21260-4\_37},
timestamp = {Fri, 21 Aug 2020 17:12:20 +0200},
biburl = {https://dblp.org/rec/conf/isbra/NicolaeM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MangulANTMZ11,
author = {Serghei Mangul and
Irina Astrovskaya and
Marius Nicolae and
Bassam Tork and
Ion I. Mandoiu and
Alexander Zelikovsky},
editor = {Teresa M. Przytycka and
Marie{-}France Sagot},
title = {Maximum Likelihood Estimation of Incomplete Genomic Spectrum from
{HTS} Data},
booktitle = {Algorithms in Bioinformatics - 11th International Workshop, {WABI}
2011, Saarbr{\"{u}}cken, Germany, September 5-7, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6833},
pages = {213--224},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23038-7\_19},
doi = {10.1007/978-3-642-23038-7\_19},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MangulANTMZ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/iccabs/2011,
editor = {Ion I. Mandoiu and
Satoru Miyano and
Teresa M. Przytycka and
Sanguthevar Rajasekaran},
title = {{IEEE} 1st International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2011, Orlando, FL, USA, February 3-5,
2011},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://ieeexplore.ieee.org/xpl/conhome/5724107/proceeding},
isbn = {978-1-61284-851-8},
timestamp = {Wed, 16 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccabs/2011.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MandouNPZ10,
author = {Ion I. Mandoiu and
Giri Narasimhan and
Yi Pan and
Yanqing Zhang},
title = {Guest Editors' Introduction to the Special Section on Bioinformatics
Research and Applications},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {7},
number = {4},
pages = {577--578},
year = {2010},
url = {https://doi.org/10.1109/TCBB.2010.114},
doi = {10.1109/TCBB.2010.114},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MandouNPZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/NicolaeMMZ10,
author = {Marius Nicolae and
Serghei Mangul and
Ion I. Mandoiu and
Alexander Zelikovsky},
editor = {Vincent Moulton and
Mona Singh},
title = {Estimation of Alternative Splicing isoform Frequencies from RNA-Seq
Data},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {202--214},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_17},
doi = {10.1007/978-3-642-15294-8\_17},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/NicolaeMMZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/NicolaeMMZ10,
author = {Marius Nicolae and
Serghei Mangul and
Ion I. Mandoiu and
Alex Zelikovsky},
editor = {Alberto Apostolico and
Andreas W. M. Dress and
Laxmi Parida},
title = {Estimation of alternative splicing isoform frequencies from RNA-Seq
data},
booktitle = {Structure Discovery in Biology: Motifs, Networks {\&} Phylogenies,
06.06. - 11.06.2010},
series = {Dagstuhl Seminar Proceedings},
volume = {10231},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik, Germany},
year = {2010},
url = {http://drops.dagstuhl.de/opus/volltexte/2010/2687/},
timestamp = {Thu, 10 Jun 2021 13:02:05 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/NicolaeMMZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/JunRHMN09,
author = {Jin Jun and
Paul Ryvkin and
Edward Hemphill and
Ion I. Mandoiu and
Craig E. Nelson},
title = {The Birth of New Genes by {RNA-} and DNA-Mediated Duplication during
Mammalian Evolution},
journal = {J. Comput. Biol.},
volume = {16},
number = {10},
pages = {1429--1444},
year = {2009},
url = {https://doi.org/10.1089/cmb.2009.0073},
doi = {10.1089/CMB.2009.0073},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/JunRHMN09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MandoiuPSZ09,
author = {Ion I. Mandoiu and
Yi Pan and
Raj Sunderraman and
Alexander Zelikovsky},
title = {Guest Editors' Introduction to the Special Section on Bioinformatics
Research and Applications},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {6},
number = {2},
pages = {178--179},
year = {2009},
url = {https://doi.org/10.1109/TCBB.2009.45},
doi = {10.1109/TCBB.2009.45},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MandoiuPSZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bicob/Mandoiu09,
author = {Ion I. Mandoiu},
editor = {Sanguthevar Rajasekaran},
title = {Genotype and Haplotype Reconstruction from Low-Coverage Short Sequencing
Reads},
booktitle = {Bioinformatics and Computational Biology, First International Conference,
BICoB 2009, New Orleans, LA, USA, April 8-10, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5462},
pages = {52--53},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-00727-9\_7},
doi = {10.1007/978-3-642-00727-9\_7},
timestamp = {Tue, 14 May 2019 10:00:55 +0200},
biburl = {https://dblp.org/rec/conf/bicob/Mandoiu09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/PasaniucKM09,
author = {Bogdan Pasaniuc and
Justin Kennedy and
Ion I. Mandoiu},
editor = {Ion I. Mandoiu and
Giri Narasimhan and
Yanqing Zhang},
title = {Imputation-Based Local Ancestry Inference in Admixed Populations},
booktitle = {Bioinformatics Research and Applications, 5th International Symposium,
{ISBRA} 2009, Fort Lauderdale, FL, USA, May 13-16, 2009, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5542},
pages = {221--233},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-01551-9\_22},
doi = {10.1007/978-3-642-01551-9\_22},
timestamp = {Fri, 24 Mar 2023 16:31:04 +0100},
biburl = {https://dblp.org/rec/conf/isbra/PasaniucKM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/isbra/2009,
editor = {Ion I. Mandoiu and
Giri Narasimhan and
Yanqing Zhang},
title = {Bioinformatics Research and Applications, 5th International Symposium,
{ISBRA} 2009, Fort Lauderdale, FL, USA, May 13-16, 2009, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5542},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-01551-9},
doi = {10.1007/978-3-642-01551-9},
isbn = {978-3-642-01550-2},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/isbra/2009.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-0911-1765,
author = {Justin Kennedy and
Ion I. Mandoiu and
Bogdan Pasaniuc},
title = {{GEDI:} Scalable Algorithms for Genotype Error Detection and Imputation},
journal = {CoRR},
volume = {abs/0911.1765},
year = {2009},
url = {http://arxiv.org/abs/0911.1765},
eprinttype = {arXiv},
eprint = {0911.1765},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-0911-1765.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KennedyMP08,
author = {Justin Kennedy and
Ion I. Mandoiu and
Bogdan Pasaniuc},
title = {Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity},
journal = {J. Comput. Biol.},
volume = {15},
number = {9},
pages = {1155--1171},
year = {2008},
url = {https://doi.org/10.1089/cmb.2007.0133},
doi = {10.1089/CMB.2007.0133},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/KennedyMP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GusevMP08,
author = {Alexander Gusev and
Ion I. Mandoiu and
Bogdan Pasaniuc},
title = {Highly Scalable Genotype Phasing by Entropy Minimization},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {5},
number = {2},
pages = {252--261},
year = {2008},
url = {https://doi.org/10.1109/TCBB.2007.70223},
doi = {10.1109/TCBB.2007.70223},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GusevMP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MandoiuPZ08,
author = {Ion I. Mandoiu and
Yi Pan and
Alexander Zelikovsky},
title = {Guest Editors' Introduction to the Special Section on Bioinformatics
Research and Applications},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {5},
number = {3},
pages = {321--322},
year = {2008},
url = {https://doi.org/10.1109/TCBB.2008.85},
doi = {10.1109/TCBB.2008.85},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MandoiuPZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apbc/DasGuptaJM08,
author = {Bhaskar DasGupta and
Jin Jun and
Ion I. Mandoiu},
editor = {Alvis Brazma and
Satoru Miyano and
Tatsuya Akutsu},
title = {Primer Selection Methods for Detection of Genomic Inversions and Deletions
via {PAMP}},
booktitle = {Proceedings of the 6th Asia-Pacific Bioinformatics Conference, {APBC}
2008, 14-17 January 2008, Kyoto, Japan},
series = {Advances in Bioinformatics and Computational Biology},
volume = {6},
pages = {353--362},
publisher = {Imperial College Press},
year = {2008},
url = {http://www.comp.nus.edu.sg/\%7Ewongls/psZ/apbc2008/apbc086a.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/apbc/DasGuptaJM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/BallaRM08,
author = {Sudha Balla and
Sanguthevar Rajasekaran and
Ion I. Mandoiu},
title = {Faster greedy algorithms for Multiple Degenerate Primer Selection},
booktitle = {Proceedings of the 8th {IEEE} International Conference on Bioinformatics
and Bioengineering, {BIBE} 2008, October 8-10, 2008, Athens, Greece},
pages = {1--4},
publisher = {{IEEE}},
year = {2008},
url = {https://doi.org/10.1109/BIBE.2008.4696662},
doi = {10.1109/BIBE.2008.4696662},
timestamp = {Wed, 16 Oct 2019 14:14:56 +0200},
biburl = {https://dblp.org/rec/conf/bibe/BallaRM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/JunRHMN08,
author = {Jin Jun and
Paul Ryvkin and
Edward Hemphill and
Ion I. Mandoiu and
Craig E. Nelson},
editor = {Craig E. Nelson and
St{\'{e}}phane Vialette},
title = {Estimating the Relative Contributions of New Genes from Retrotransposition
and Segmental Duplication Events during Mammalian Evolution},
booktitle = {Comparative Genomics, International Workshop, {RECOMB-CG} 2008, Paris,
France, October 13-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5267},
pages = {40--54},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87989-3\_4},
doi = {10.1007/978-3-540-87989-3\_4},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/JunRHMN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/isbra/2008,
editor = {Ion I. Mandoiu and
Raj Sunderraman and
Alexander Zelikovsky},
title = {Bioinformatics Research and Applications, Fourth International Symposium,
{ISBRA} 2008, Atlanta, GA, USA, May 6-9, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4983},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-79450-9},
doi = {10.1007/978-3-540-79450-9},
isbn = {978-3-540-79449-3},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbra/2008.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/slip/2008,
editor = {Ion I. Mandoiu and
Andrew A. Kennings},
title = {The Tenth International Workshop on System-Level Interconnect Prediction
{(SLIP} 2008), Newcastle, UK, April 5-8, 2008, Proceedings},
publisher = {{ACM}},
year = {2008},
isbn = {978-1-59593-918-0},
timestamp = {Tue, 08 Apr 2008 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/slip/2008.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijfcs/BallaRM07,
author = {Sudha Balla and
Sanguthevar Rajasekaran and
Ion I. Mandoiu},
title = {Efficient Algorithms for degenerate Primer Search},
journal = {Int. J. Found. Comput. Sci.},
volume = {18},
number = {4},
pages = {899--910},
year = {2007},
url = {https://doi.org/10.1142/S0129054107005042},
doi = {10.1142/S0129054107005042},
timestamp = {Tue, 06 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijfcs/BallaRM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jucs/CalinescuMZZ07,
author = {Gruia C{\u{a}}linescu and
Ion I. Mandoiu and
Alexander Zelikovsky and
Marius Zimand},
title = {Selected Papers from the 1st {ACIS} International Workshop on Self-Assembling
Wireless Networks},
journal = {J. Univers. Comput. Sci.},
volume = {13},
number = {1},
pages = {1--3},
year = {2007},
url = {http://www.jucs.org/jucs\_13\_1/self\_assembling\_wireless\_networks},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jucs/CalinescuMZZ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcad/KahngMXZ07,
author = {Andrew B. Kahng and
Ion I. Mandoiu and
Xu Xu and
Alexander Zelikovsky},
title = {Enhanced Design Flow and Optimizations for Multiproject Wafers},
journal = {{IEEE} Trans. Comput. Aided Des. Integr. Circuits Syst.},
volume = {26},
number = {2},
pages = {301--311},
year = {2007},
url = {https://doi.org/10.1109/TCAD.2006.883922},
doi = {10.1109/TCAD.2006.883922},
timestamp = {Thu, 24 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcad/KahngMXZ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MandoiuPZ07,
author = {Ion I. Mandoiu and
Yi Pan and
Alexander Zelikovsky},
title = {Guest Editors' Introduction to the Special Section on Bioinformatics
Research and Applications},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {4},
number = {4},
pages = {513--514},
year = {2007},
url = {https://doi.org/10.1109/TCBB.2007.4381228},
doi = {10.1109/TCBB.2007.4381228},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MandoiuPZ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KennedyMP07,
author = {Justin Kennedy and
Ion I. Mandoiu and
Bogdan Pasaniuc},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {73--84},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_8},
doi = {10.1007/978-3-540-74126-8\_8},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KennedyMP07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/isbra/2007,
editor = {Ion I. Mandoiu and
Alexander Zelikovsky},
title = {Bioinformatics Research and Applications, Third International Symposium,
{ISBRA} 2007, Atlanta, GA, USA, May 7-10, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4463},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-72031-7},
doi = {10.1007/978-3-540-72031-7},
isbn = {978-3-540-72030-0},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbra/2007.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/slip/2007,
editor = {Andrew A. Kennings and
Ion I. Mandoiu},
title = {The Ninth International Workshop on System-Level Interconnect Prediction
{(SLIP} 2007), Austin, Texas, USA, March 17-18, 2007, Proceedings},
publisher = {{ACM}},
year = {2007},
isbn = {978-1-59593-622-6},
timestamp = {Mon, 27 Aug 2007 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/slip/2007.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/crc/MandoiuKAZ07,
author = {Ion I. Mandoiu and
Andrew B. Kahng and
Christoph Albrecht and
Alexander Zelikovsky},
editor = {Teofilo F. Gonzalez},
title = {Multicommodity Flow Algorithms for Buffered Global Routing},
booktitle = {Handbook of Approximation Algorithms and Metaheuristics},
publisher = {Chapman and Hall/CRC},
year = {2007},
url = {https://doi.org/10.1201/9781420010749.ch80},
doi = {10.1201/9781420010749.CH80},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/reference/crc/MandoiuKAZ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/crc/MandoiuKZ07,
author = {Ion I. Mandoiu and
Andrew B. Kahng and
Alexander Zelikovsky},
editor = {Teofilo F. Gonzalez},
title = {Practical Approximations of Steiner Trees in Uniform Orientation Metrics},
booktitle = {Handbook of Approximation Algorithms and Metaheuristics},
publisher = {Chapman and Hall/CRC},
year = {2007},
url = {https://doi.org/10.1201/9781420010749.ch43},
doi = {10.1201/9781420010749.CH43},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/reference/crc/MandoiuKZ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/crc/MandoiuOZ07,
author = {Ion I. Mandoiu and
Alex Olshevsky and
Alexander Zelikovsky},
editor = {Teofilo F. Gonzalez},
title = {QoS Multimedia Multicast Routing},
booktitle = {Handbook of Approximation Algorithms and Metaheuristics},
publisher = {Chapman and Hall/CRC},
year = {2007},
url = {https://doi.org/10.1201/9781420010749.ch71},
doi = {10.1201/9781420010749.CH71},
timestamp = {Wed, 12 Jul 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/reference/crc/MandoiuOZ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MandoiuT06,
author = {Ion I. Mandoiu and
Dragos Trinca},
title = {Exact and Approximation Algorithms for {DNA} Tag Set Design},
journal = {J. Comput. Biol.},
volume = {13},
number = {3},
pages = {732--744},
year = {2006},
url = {https://doi.org/10.1089/cmb.2006.13.732},
doi = {10.1089/CMB.2006.13.732},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/MandoiuT06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcad/KahngMRXZ06,
author = {Andrew B. Kahng and
Ion I. Mandoiu and
Sherief Reda and
Xu Xu and
Alexander Zelikovsky},
title = {Computer-Aided Optimization of {DNA} Array Design and Manufacturing},
journal = {{IEEE} Trans. Comput. Aided Des. Integr. Circuits Syst.},
volume = {25},
number = {2},
pages = {305--320},
year = {2006},
url = {https://doi.org/10.1109/TCAD.2005.855940},
doi = {10.1109/TCAD.2005.855940},
timestamp = {Thu, 24 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcad/KahngMRXZ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/winet/AlthausCMPTZ06,
author = {Ernst Althaus and
Gruia C{\u{a}}linescu and
Ion I. Mandoiu and
Sushil K. Prasad and
N. Tchervenski and
Alexander Zelikovsky},
title = {Power Efficient Range Assignment for Symmetric Connectivity in Static
Ad Hoc Wireless Networks},
journal = {Wirel. Networks},
volume = {12},
number = {3},
pages = {287--299},
year = {2006},
url = {https://doi.org/10.1007/s11276-005-5275-x},
doi = {10.1007/S11276-005-5275-X},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/winet/AlthausCMPTZ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/PasaniucM06,
author = {Bogdan Pasaniuc and
Ion I. Mandoiu},
title = {Highly Scalable Genotype Phasing by Entropy Minimization},
booktitle = {28th International Conference of the {IEEE} Engineering in Medicine
and Biology Society, {EMBC} 2006, New York City, NY, USA, August 30
- September 3, 2006, Main Volume},
pages = {3482--3486},
publisher = {{IEEE}},
year = {2006},
url = {https://doi.org/10.1109/IEMBS.2006.259355},
doi = {10.1109/IEMBS.2006.259355},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/embc/PasaniucM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/MandoiuP06,
author = {Ion I. Mandoiu and
Claudia Prajescu},
editor = {Vassil N. Alexandrov and
G. Dick van Albada and
Peter M. A. Sloot and
Jack J. Dongarra},
title = {High-Throughput {SNP} Genotyping by {SBE/SBH}},
booktitle = {Computational Science - {ICCS} 2006, 6th International Conference,
Reading, UK, May 28-31, 2006, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {3992},
pages = {742--749},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11758525\_100},
doi = {10.1007/11758525\_100},
timestamp = {Tue, 14 May 2019 10:00:48 +0200},
biburl = {https://dblp.org/rec/conf/iccS/MandoiuP06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/HajiaghayiJLMRV06,
author = {Mohammad Taghi Hajiaghayi and
Kamal Jain and
Lap Chi Lau and
Ion I. Mandoiu and
Alexander Russell and
Vijay V. Vazirani},
editor = {Vassil N. Alexandrov and
G. Dick van Albada and
Peter M. A. Sloot and
Jack J. Dongarra},
title = {Minimum Multicolored Subgraph Problem in Multiplex {PCR} Primer Set
Selection and Population Haplotyping},
booktitle = {Computational Science - {ICCS} 2006, 6th International Conference,
Reading, UK, May 28-31, 2006, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {3992},
pages = {758--766},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11758525\_102},
doi = {10.1007/11758525\_102},
timestamp = {Tue, 26 Jun 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccS/HajiaghayiJLMRV06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/algorithmica/KarpinskiMOZ05,
author = {Marek Karpinski and
Ion I. Mandoiu and
Alexander Olshevsky and
Alexander Zelikovsky},
title = {Improved Approximation Algorithms for the Quality of Service Multicast
Tree Problem},
journal = {Algorithmica},
volume = {42},
number = {2},
pages = {109--120},
year = {2005},
url = {https://doi.org/10.1007/s00453-004-1133-y},
doi = {10.1007/S00453-004-1133-Y},
timestamp = {Wed, 17 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/algorithmica/KarpinskiMOZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DasGuptaKMS05,
author = {Bhaskar DasGupta and
Kishori M. Konwar and
Ion I. Mandoiu and
Alexander A. Shvartsman},
title = {{DNA-BAR:} distinguisher selection for {DNA} barcoding},
journal = {Bioinform.},
volume = {21},
number = {16},
pages = {3424--3426},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti547},
doi = {10.1093/BIOINFORMATICS/BTI547},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DasGuptaKMS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijbra/DasGuptaKMS05,
author = {Bhaskar DasGupta and
Kishori M. Konwar and
Ion I. Mandoiu and
Alexander A. Shvartsman},
title = {Highly scalable algorithms for robust string barcoding},
journal = {Int. J. Bioinform. Res. Appl.},
volume = {1},
number = {2},
pages = {145--161},
year = {2005},
url = {https://doi.org/10.1504/IJBRA.2005.007574},
doi = {10.1504/IJBRA.2005.007574},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijbra/DasGuptaKMS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcad/ChenCKMWY05,
author = {Hongyu Chen and
Chung{-}Kuan Cheng and
Andrew B. Kahng and
Ion I. Mandoiu and
Qinke Wang and
Bo Yao},
title = {The {Y} architecture for on-chip interconnect: analysis and methodology},
journal = {{IEEE} Trans. Comput. Aided Des. Integr. Circuits Syst.},
volume = {24},
number = {4},
pages = {588--599},
year = {2005},
url = {https://doi.org/10.1109/TCAD.2005.844096},
doi = {10.1109/TCAD.2005.844096},
timestamp = {Thu, 24 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcad/ChenCKMWY05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcad/GuptaKMS05,
author = {Puneet Gupta and
Andrew B. Kahng and
Ion I. Mandoiu and
Puneet Sharma},
title = {Layout-aware scan chain synthesis for improved path delay fault coverage},
journal = {{IEEE} Trans. Comput. Aided Des. Integr. Circuits Syst.},
volume = {24},
number = {7},
pages = {1104--1114},
year = {2005},
url = {https://doi.org/10.1109/TCAD.2005.850900},
doi = {10.1109/TCAD.2005.850900},
timestamp = {Thu, 28 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcad/GuptaKMS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/MandoiuPT05,
author = {Ion I. Mandoiu and
Claudia Prajescu and
Dragos Trinca},
title = {Improved Tag Set Design and Multiplexing Algorithms for Universal
Arrays},
journal = {Trans. Comp. Sys. Biology},
volume = {2},
pages = {124--137},
year = {2005},
url = {https://doi.org/10.1007/11567752\_9},
doi = {10.1007/11567752\_9},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/MandoiuPT05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apbc/KonwarMRS05,
author = {Kishori M. Konwar and
Ion I. Mandoiu and
Alexander Russell and
Alexander A. Shvartsman},
editor = {Yi{-}Ping Phoebe Chen and
Limsoon Wong},
title = {Improved algorithms for multiplex {PCR} primer set selection with
amplification length constraints},
booktitle = {Proceedings of 3rd Asia-Pacific Bioinformatics Conference, 17-21 January
2005, Singapore},
pages = {41--50},
publisher = {Imperial College Press, London},
year = {2005},
url = {http://www.comp.nus.edu.sg/\%7Ewongls/psZ/apbc2005/camera-ready/151.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/apbc/KonwarMRS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/MandoiuT05,
author = {Ion I. Mandoiu and
Dragos Trinca},
editor = {Alberto Apostolico and
Maxime Crochemore and
Kunsoo Park},
title = {Exact and Approximation Algorithms for {DNA} Tag Set Design},
booktitle = {Combinatorial Pattern Matching, 16th Annual Symposium, {CPM} 2005,
Jeju Island, Korea, June 19-22, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3537},
pages = {383--393},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11496656\_33},
doi = {10.1007/11496656\_33},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/cpm/MandoiuT05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/MandoiuPT05,
author = {Ion I. Mandoiu and
Claudia Prajescu and
Dragos Trinca},
editor = {Vaidy S. Sunderam and
G. Dick van Albada and
Peter M. A. Sloot and
Jack J. Dongarra},
title = {Improved Tag Set Design and Multiplexing Algorithms for Universal
Arrays},
booktitle = {Computational Science - {ICCS} 2005, 5th International Conference,
Atlanta, GA, USA, May 22-25, 2005, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {3515},
pages = {994--1002},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11428848\_126},
doi = {10.1007/11428848\_126},
timestamp = {Tue, 14 May 2019 10:00:48 +0200},
biburl = {https://dblp.org/rec/conf/iccS/MandoiuPT05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/DasGuptaKMS05,
author = {Bhaskar DasGupta and
Kishori M. Konwar and
Ion I. Mandoiu and
Alexander A. Shvartsman},
editor = {Vaidy S. Sunderam and
G. Dick van Albada and
Peter M. A. Sloot and
Jack J. Dongarra},
title = {Highly Scalable Algorithms for Robust String Barcoding},
booktitle = {Computational Science - {ICCS} 2005, 5th International Conference,
Atlanta, GA, USA, May 22-25, 2005, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {3515},
pages = {1020--1028},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11428848\_129},
doi = {10.1007/11428848\_129},
timestamp = {Tue, 26 Jun 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccS/DasGuptaKMS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-cs-0502054,
author = {Ion I. Mandoiu and
Claudia Prajescu and
Dragos Trinca},
title = {Improved Tag Set Design and Multiplexing Algorithms for Universal
Arrays},
journal = {CoRR},
volume = {abs/cs/0502054},
year = {2005},
url = {http://arxiv.org/abs/cs/0502054},
eprinttype = {arXiv},
eprint = {cs/0502054},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-cs-0502054.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-cs-0502065,
author = {Bhaskar DasGupta and
Kishori M. Konwar and
Ion I. Mandoiu and
Alexander A. Shvartsman},
title = {Highly Scalable Algorithms for Robust String Barcoding},
journal = {CoRR},
volume = {abs/cs/0502065},
year = {2005},
url = {http://arxiv.org/abs/cs/0502065},
eprinttype = {arXiv},
eprint = {cs/0502065},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-cs-0502065.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-cs-0503057,
author = {Ion I. Mandoiu and
Dragos Trinca},
title = {Exact and Approximation Algorithms for {DNA} Tag Set Design},
journal = {CoRR},
volume = {abs/cs/0503057},
year = {2005},
url = {http://arxiv.org/abs/cs/0503057},
eprinttype = {arXiv},
eprint = {cs/0503057},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-cs-0503057.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-cs-0508045,
author = {Christoph Albrecht and
Andrew B. Kahng and
Ion I. Mandoiu and
Alexander Zelikovsky},
title = {Multicommodity Flow Algorithms for Buffered Global Routing},
journal = {CoRR},
volume = {abs/cs/0508045},
year = {2005},
url = {http://arxiv.org/abs/cs/0508045},
eprinttype = {arXiv},
eprint = {cs/0508045},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-cs-0508045.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-cs-0512052,
author = {Ion I. Mandoiu and
Claudia Prajescu},
title = {High-Throughput {SNP} Genotyping by {SBE/SBH}},
journal = {CoRR},
volume = {abs/cs/0512052},
year = {2005},
url = {http://arxiv.org/abs/cs/0512052},
eprinttype = {arXiv},
eprint = {cs/0512052},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-cs-0512052.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KahngMPRZ04,
author = {Andrew B. Kahng and
Ion I. Mandoiu and
Pavel A. Pevzner and
Sherief Reda and
Alexander Zelikovsky},
title = {Scalable Heuristics for Design of {DNA} Probe Arrays},
journal = {J. Comput. Biol.},
volume = {11},
number = {2/3},
pages = {429--447},
year = {2004},
url = {https://doi.org/10.1089/1066527041410391},
doi = {10.1089/1066527041410391},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/KahngMPRZ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/monet/CalinescuMWZ04,
author = {Gruia C{\u{a}}linescu and
Ion I. Mandoiu and
Peng{-}Jun Wan and
Alexander Zelikovsky},
title = {Selecting Forwarding Neighbors in Wireless Ad Hoc Networks},
journal = {Mob. Networks Appl.},
volume = {9},
number = {2},
pages = {101--111},
year = {2004},
url = {https://doi.org/10.1023/B:MONE.0000013622.63511.57},
doi = {10.1023/B:MONE.0000013622.63511.57},
timestamp = {Thu, 24 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/monet/CalinescuMWZ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcad/KahngLM04,
author = {Andrew B. Kahng and
Bao Liu and
Ion I. Mandoiu},
title = {Nontree routing for reliability and yield improvement {[IC} layout]},
journal = {{IEEE} Trans. Comput. Aided Des. Integr. Circuits Syst.},
volume = {23},
number = {1},
pages = {148--156},
year = {2004},
url = {https://doi.org/10.1109/TCAD.2003.819426},
doi = {10.1109/TCAD.2003.819426},
timestamp = {Thu, 21 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcad/KahngLM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ispd/KahngMWXZ04,
author = {Andrew B. Kahng and
Ion I. Mandoiu and
Qinke Wang and
Xu Xu and
Alexander Zelikovsky},
editor = {Charles J. Alpert and
Patrick Groeneveld},
title = {Multi-project reticle floorplanning and wafer dicing},
booktitle = {Proceedings of the 2004 International Symposium on Physical Design,
{ISPD} 2004, Phoenix, Arizona, USA, April 18-21, 2004},
pages = {70--77},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/981066.981082},
doi = {10.1145/981066.981082},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ispd/KahngMWXZ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/cs-DS-0406053,
author = {Kishori M. Konwar and
Ion I. Mandoiu and
Alexander Russell and
Alexander A. Shvartsman},
title = {Approximation Algorithms for Minimum {PCR} Primer Set Selection with
Amplification Length and Uniqueness Constraints},
journal = {CoRR},
volume = {cs.DS/0406053},
year = {2004},
url = {http://arxiv.org/abs/cs/0406053},
timestamp = {Fri, 10 Jan 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/cs-DS-0406053.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcad/AlpertKLMZ03,
author = {Charles J. Alpert and
Andrew B. Kahng and
Bao Liu and
Ion I. Mandoiu and
Alexander Zelikovsky},
title = {Minimum buffered routing with bounded capacitive load for slew rate
and reliability control},
journal = {{IEEE} Trans. Comput. Aided Des. Integr. Circuits Syst.},
volume = {22},
number = {3},
pages = {241--253},
year = {2003},
url = {https://doi.org/10.1109/TCAD.2002.807888},
doi = {10.1109/TCAD.2002.807888},
timestamp = {Thu, 21 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcad/AlpertKLMZ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcad/AlbrechtKLMZ03,
author = {Christoph Albrecht and
Andrew B. Kahng and
Bao Liu and
Ion I. Mandoiu and
Alexander Zelikovsky},
title = {On the skew-bounded minimum-buffer routing tree problem},
journal = {{IEEE} Trans. Comput. Aided Des. Integr. Circuits Syst.},
volume = {22},
number = {7},
pages = {937--945},
year = {2003},
url = {https://doi.org/10.1109/TCAD.2003.814238},
doi = {10.1109/TCAD.2003.814238},
timestamp = {Thu, 21 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcad/AlbrechtKLMZ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aspdac/KahngMZ03,
author = {Andrew B. Kahng and
Ion I. Mandoiu and
Alexander Zelikovsky},
editor = {Hiroto Yasuura},
title = {Highly scalable algorithms for rectilinear and octilinear Steiner
trees},
booktitle = {Proceedings of the 2003 Asia and South Pacific Design Automation Conference,
{ASP-DAC} '03, Kitakyushu, Japan, January 21-24, 2003},
pages = {827--833},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/1119772.1119955},
doi = {10.1145/1119772.1119955},
timestamp = {Thu, 11 Mar 2021 17:04:51 +0100},
biburl = {https://dblp.org/rec/conf/aspdac/KahngMZ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/globecom/CalinescuFMOYZ03,
author = {Gruia C{\u{a}}linescu and
Cristina G. Fernandes and
Ion I. Mandoiu and
Alexander Olshevsky and
K. Yang and
Alexander Zelikovsky},
title = {Primal-dual algorithms for QoS multimedia multicast},
booktitle = {Proceedings of the Global Telecommunications Conference, 2003. {GLOBECOM}
'03, San Francisco, CA, USA, 1-5 December 2003},
pages = {3631--3635},
publisher = {{IEEE}},
year = {2003},
url = {https://doi.org/10.1109/GLOCOM.2003.1258911},
doi = {10.1109/GLOCOM.2003.1258911},
timestamp = {Wed, 16 Oct 2019 14:14:51 +0200},
biburl = {https://dblp.org/rec/conf/globecom/CalinescuFMOYZ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccad/ChenCKMWY03,
author = {Hongyu Chen and
Chung{-}Kuan Cheng and
Andrew B. Kahng and
Ion I. Mandoiu and
Qinke Wang and
Bo Yao},
title = {The Y-Architecture for On-Chip Interconnect: Analysis and Methodology},
booktitle = {2003 International Conference on Computer-Aided Design, {ICCAD} 2003,
San Jose, CA, USA, November 9-13, 2003},
pages = {13--20},
publisher = {{IEEE} Computer Society / {ACM}},
year = {2003},
url = {https://doi.ieeecomputersociety.org/10.1109/ICCAD.2003.1257579},
doi = {10.1109/ICCAD.2003.1257579},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccad/ChenCKMWY03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccad/KahngMRXZ03,
author = {Andrew B. Kahng and
Ion I. Mandoiu and
Sherief Reda and
Xu Xu and
Alexander Zelikovsky},
title = {Evaluation of Placement Techniques for {DNA} Probe Array Layout},
booktitle = {2003 International Conference on Computer-Aided Design, {ICCAD} 2003,
San Jose, CA, USA, November 9-13, 2003},
pages = {262--269},
publisher = {{IEEE} Computer Society / {ACM}},
year = {2003},
url = {https://doi.ieeecomputersociety.org/10.1109/ICCAD.2003.1257670},
doi = {10.1109/ICCAD.2003.1257670},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccad/KahngMRXZ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccad/GuptaKMS03,
author = {Puneet Gupta and
Andrew B. Kahng and
Ion I. Mandoiu and
Puneet Sharma},
title = {Layout-Aware Scan Chain Synthesis for Improved Path Delay Fault Coverage},
booktitle = {2003 International Conference on Computer-Aided Design, {ICCAD} 2003,
San Jose, CA, USA, November 9-13, 2003},
pages = {754--759},
publisher = {{IEEE} Computer Society / {ACM}},
year = {2003},
url = {https://doi.ieeecomputersociety.org/10.1109/ICCAD.2003.1257893},
doi = {10.1109/ICCAD.2003.1257893},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccad/GuptaKMS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccd/KahngMRXZ03,
author = {Andrew B. Kahng and
Ion I. Mandoiu and
Sherief Reda and
Xu Xu and
Alexander Zelikovsky},
title = {Design Flow Enhancements for {DNA} Arrays},
booktitle = {21st International Conference on Computer Design {(ICCD} 2003),VLSI
in Computers and Processors, 13-15 October 2003, San Jose, CA, USA,
Proceedings},
pages = {116},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/ICCD.2003.1240883},
doi = {10.1109/ICCD.2003.1240883},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccd/KahngMRXZ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KahngMPRZ03,
author = {Andrew B. Kahng and
Ion I. Mandoiu and
Pavel A. Pevzner and
Sherief Reda and
Alexander Zelikovsky},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Engineering a scalable placement heuristic for {DNA} probe arrays},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {148--156},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640095},
doi = {10.1145/640075.640095},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KahngMPRZ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/slip/ChenCKMW03,
author = {Hongyu Chen and
Chung{-}Kuan Cheng and
Andrew B. Kahng and
Ion I. Mandoiu and
Qinke Wang},
editor = {Dennis Sylvester and
Dirk Stroobandt and
Louis Scheffer and
Payman Zarkesh{-}Ha},
title = {Estimation of wirelength reduction for lambda-geometry vs. manhattan
placement and routing},
booktitle = {The 5th International Workshop on System-Level Interconnect Prediction
{(SLIP} 2003), Monterey, CA, USA, April 5-6, 2003, Proceedings},
pages = {71--76},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/639929.639944},
doi = {10.1145/639929.639944},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/slip/ChenCKMW03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wads/KarpinskiMOZ03,
author = {Marek Karpinski and
Ion I. Mandoiu and
Alexander Olshevsky and
Alexander Zelikovsky},
editor = {Frank K. H. A. Dehne and
J{\"{o}}rg{-}R{\"{u}}diger Sack and
Michiel H. M. Smid},
title = {Improved Approximation Algorithms for the Quality of Service Steiner
Tree Problem},
booktitle = {Algorithms and Data Structures, 8th International Workshop, {WADS}
2003, Ottawa, Ontario, Canada, July 30 - August 1, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2748},
pages = {401--411},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-45078-8\_35},
doi = {10.1007/978-3-540-45078-8\_35},
timestamp = {Tue, 14 May 2019 10:00:50 +0200},
biburl = {https://dblp.org/rec/conf/wads/KarpinskiMOZ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wcnc/AlthausCMPTZ03,
author = {Ernst Althaus and
Gruia C{\u{a}}linescu and
Ion I. Mandoiu and
Sushil K. Prasad and
N. Tchervenski and
Alexander Zelikovsky},
title = {Power efficient range assignment in ad-hoc wireless networks},
booktitle = {2003 {IEEE} Wireless Communications and Networking, {WCNC} 2003, New
Orleans, LA, USA, 16-20 March, 2003},
pages = {1889--1894},
publisher = {{IEEE}},
year = {2003},
url = {https://doi.org/10.1109/WCNC.2003.1200675},
doi = {10.1109/WCNC.2003.1200675},
timestamp = {Wed, 16 Oct 2019 14:14:50 +0200},
biburl = {https://dblp.org/rec/conf/wcnc/AlthausCMPTZ03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jal/JainMVW02,
author = {Kamal Jain and
Ion I. Mandoiu and
Vijay V. Vazirani and
David P. Williamson},
title = {A primal-dual schema based approximation algorithm for the element
connectivity problem},
journal = {J. Algorithms},
volume = {45},
number = {1},
pages = {1--15},
year = {2002},
url = {https://doi.org/10.1016/S0196-6774(02)00222-5},
doi = {10.1016/S0196-6774(02)00222-5},
timestamp = {Tue, 06 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jal/JainMVW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcad/DraganKMMZ02,
author = {Feodor F. Dragan and
Andrew B. Kahng and
Ion I. Mandoiu and
Sudhakar Muddu and
Alexander Zelikovsky},
title = {Provably good global buffering by generalized multiterminalmulticommodity
flow approximation},
journal = {{IEEE} Trans. Comput. Aided Des. Integr. Circuits Syst.},
volume = {21},
number = {3},
pages = {263--274},
year = {2002},
url = {https://doi.org/10.1109/43.986421},
doi = {10.1109/43.986421},
timestamp = {Thu, 24 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcad/DraganKMMZ02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccad/KahngLM02,
author = {Andrew B. Kahng and
Bao Liu and
Ion I. Mandoiu},
editor = {Lawrence T. Pileggi and
Andreas Kuehlmann},
title = {Non-tree routing for reliability and yield improvement},
booktitle = {Proceedings of the 2002 {IEEE/ACM} International Conference on Computer-aided
Design, {ICCAD} 2002, San Jose, California, USA, November 10-14, 2002},
pages = {260--266},
publisher = {{ACM} / {IEEE} Computer Society},
year = {2002},
url = {https://doi.org/10.1145/774572.774611},
doi = {10.1145/774572.774611},
timestamp = {Thu, 21 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccad/KahngLM02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ifip8/BandelaCKMZ02,
author = {C. Bandela and
Yu Chen and
Andrew B. Kahng and
Ion I. Mandoiu and
Alexander Zelikovsky},
editor = {Roland Traunm{\"{u}}ller},
title = {Auctions with Buyer Preferences},
booktitle = {Information Systems: The e-Business Challenge, {IFIP} 17\({}^{\mbox{th}}\)
World Computer Congress - {TC8} Stream on Information Systems: The
e-Business Challenge, August 25-30, 2002, Montr{\'{e}}al, Qu{\'{e}}bec,
Canada},
series = {{IFIP} Conference Proceedings},
volume = {222},
pages = {223--238},
publisher = {Kluwer},
year = {2002},
timestamp = {Thu, 10 Aug 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ifip8/BandelaCKMZ02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ifipTCS/CalinescuMZ02,
author = {Gruia C{\u{a}}linescu and
Ion I. Mandoiu and
Alexander Zelikovsky},
editor = {Ricardo A. Baeza{-}Yates and
Ugo Montanari and
Nicola Santoro},
title = {Symmetric Connectivity with Minimum Power Consumption in Radio Networks},
booktitle = {Foundations of Information Technology in the Era of Networking and
Mobile Computing, {IFIP} 17\({}^{\mbox{th}}\) World Computer Congress
- {TC1} Stream / 2\({}^{\mbox{nd}}\) {IFIP} International Conference
on Theoretical Computer Science {(TCS} 2002), August 25-30, 2002,
Montr{\'{e}}al, Qu{\'{e}}bec, Canada},
series = {{IFIP} Conference Proceedings},
volume = {223},
pages = {119--130},
publisher = {Kluwer},
year = {2002},
url = {https://doi.org/10.1007/978-0-387-35608-2\_11},
doi = {10.1007/978-0-387-35608-2\_11},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ifipTCS/CalinescuMZ02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vlsid/AlbrechtKMZ02,
author = {Christoph Albrecht and
Andrew B. Kahng and
Ion I. Mandoiu and
Alexander Zelikovsky},
title = {Floorplan Evaluation with Timing-Driven Global Wireplanning, Pin Assignment
and Buffer/Wire Sizing},
booktitle = {Proceedings of the 7th Asia and South Pacific Design Automation Conference
{(ASP-DAC} 2002), and the 15th International Conference on {VLSI}
Design {(VLSI} Design 2002), Bangalore, India, January 7-11, 2002},
pages = {580},
publisher = {{IEEE} Computer Society},
year = {2002},
url = {https://doi.org/10.1109/ASPDAC.2002.994986},
doi = {10.1109/ASPDAC.2002.994986},
timestamp = {Mon, 14 Nov 2022 15:28:09 +0100},
biburl = {https://dblp.org/rec/conf/vlsid/AlbrechtKMZ02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KahngMPRZ02,
author = {Andrew B. Kahng and
Ion I. Mandoiu and
Pavel A. Pevzner and
Sherief Reda and
Alexander Zelikovsky},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Border Length Minimization in {DNA} Array Design},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {435--448},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_34},
doi = {10.1007/3-540-45784-4\_34},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KahngMPRZ02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/siamdm/ZelikovskyM01,
author = {Alexander Zelikovsky and
Ion I. Mandoiu},
title = {Practical Approximation Algorithms for Zero- and Bounded-Skew Trees},
journal = {{SIAM} J. Discret. Math.},
volume = {15},
number = {1},
pages = {97--111},
year = {2001},
url = {https://doi.org/10.1137/S0895480100378367},
doi = {10.1137/S0895480100378367},
timestamp = {Sat, 25 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/siamdm/ZelikovskyM01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aspdac/DraganKMMZ01,
author = {Feodor F. Dragan and
Andrew B. Kahng and
Ion I. Mandoiu and
Sudhakar Muddu and
Alexander Zelikovsky},
editor = {Satoshi Goto},
title = {Provably good global buffering by multi-terminal multicommodity flow
approximation},
booktitle = {Proceedings of {ASP-DAC} 2001, Asia and South Pacific Design Automation
Conference 2001, January 30-February 2, 2001, Yokohama, Japan},
pages = {120--125},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/370155.370299},
doi = {10.1145/370155.370299},
timestamp = {Wed, 16 Oct 2019 14:14:52 +0200},
biburl = {https://dblp.org/rec/conf/aspdac/DraganKMMZ01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dialm/CalinescuMWZ01,
author = {Gruia C{\u{a}}linescu and
Ion I. Mandoiu and
Peng{-}Jun Wan and
Alexander Zelikovsky},
title = {Selecting forwarding neighbors in wireless Ad Hoc networks},
booktitle = {Proceedings of the 5th International Workshop on Discrete Algorithms
and Methods for Mobile Computing and Communications {(DIAL-M} 2001),
Rome, Italy, July 21, 2001},
pages = {34--43},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/381448.381453},
doi = {10.1145/381448.381453},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/dialm/CalinescuMWZ01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccad/AlpertKLMZ01,
author = {Charles J. Alpert and
Andrew B. Kahng and
Bao Liu and
Ion I. Mandoiu and
Alexander Zelikovsky},
editor = {Rolf Ernst},
title = {Minimum-Buffered Routing of Non-Critical Nets for Slew Rate and Reliability
Control},
booktitle = {Proceedings of the 2001 {IEEE/ACM} International Conference on Computer-Aided
Design, {ICCAD} 2001, San Jose, CA, USA, November 4-8, 2001},
pages = {408},
publisher = {{IEEE} Computer Society},
year = {2001},
url = {https://doi.org/10.1109/ICCAD.2001.968659},
doi = {10.1109/ICCAD.2001.968659},
timestamp = {Thu, 21 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccad/AlpertKLMZ01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/soda/ZelikovskyM01,
author = {Alexander Zelikovsky and
Ion I. Mandoiu},
editor = {S. Rao Kosaraju},
title = {Practical approximation algorithms for zero- and bounded-skew trees},
booktitle = {Proceedings of the Twelfth Annual Symposium on Discrete Algorithms,
January 7-9, 2001, Washington, DC, {USA}},
pages = {407--416},
publisher = {{ACM/SIAM}},
year = {2001},
url = {http://dl.acm.org/citation.cfm?id=365411.365490},
timestamp = {Fri, 07 Dec 2012 17:02:08 +0100},
biburl = {https://dblp.org/rec/conf/soda/ZelikovskyM01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wads/DraganKMMZ01,
author = {Feodor F. Dragan and
Andrew B. Kahng and
Ion I. Mandoiu and
Sudhakar Muddu and
Alexander Zelikovsky},
editor = {Frank K. H. A. Dehne and
J{\"{o}}rg{-}R{\"{u}}diger Sack and
Roberto Tamassia},
title = {Practical Approximation Algorithms for Separable Packing Linear Programs},
booktitle = {Algorithms and Data Structures, 7th International Workshop, {WADS}
2001, Providence, RI, USA, August 8-10, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2125},
pages = {325--337},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44634-6\_30},
doi = {10.1007/3-540-44634-6\_30},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wads/DraganKMMZ01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ipl/MandoiuZ00,
author = {Ion I. Mandoiu and
Alexander Zelikovsky},
title = {A note on the {MST} heuristic for bounded edge-length Steiner trees
with minimum number of Steiner points},
journal = {Inf. Process. Lett.},
volume = {75},
number = {4},
pages = {165--167},
year = {2000},
url = {https://doi.org/10.1016/S0020-0190(00)00095-8},
doi = {10.1016/S0020-0190(00)00095-8},
timestamp = {Tue, 06 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ipl/MandoiuZ00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcad/MandoiuVG00,
author = {Ion I. Mandoiu and
Vijay V. Vazirani and
Joseph L. Ganley},
title = {A new heuristic for rectilinear Steiner trees},
journal = {{IEEE} Trans. Comput. Aided Des. Integr. Circuits Syst.},
volume = {19},
number = {10},
pages = {1129--1139},
year = {2000},
url = {https://doi.org/10.1109/43.875292},
doi = {10.1109/43.875292},
timestamp = {Thu, 24 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcad/MandoiuVG00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccad/DraganKMMZ00,
author = {Feodor F. Dragan and
Andrew B. Kahng and
Ion I. Mandoiu and
Sudhakar Muddu and
Alexander Zelikovsky},
editor = {Ellen Sentovich},
title = {Provably Good Global Buffering Using an Available Buffer Block Plan},
booktitle = {Proceedings of the 2000 {IEEE/ACM} International Conference on Computer-Aided
Design, 2000, San Jose, California, USA, November 5-9, 2000},
pages = {104--109},
publisher = {{IEEE} Computer Society},
year = {2000},
url = {https://doi.org/10.1109/ICCAD.2000.896458},
doi = {10.1109/ICCAD.2000.896458},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccad/DraganKMMZ00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccad/MandoiuVG99,
author = {Ion I. Mandoiu and
Vijay V. Vazirani and
Joseph L. Ganley},
editor = {Jacob K. White and
Ellen Sentovich},
title = {A new heuristic for rectilinear Steiner trees},
booktitle = {Proceedings of the 1999 {IEEE/ACM} International Conference on Computer-Aided
Design, 1999, San Jose, California, USA, November 7-11, 1999},
pages = {157--162},
publisher = {{IEEE} Computer Society},
year = {1999},
url = {https://doi.org/10.1109/ICCAD.1999.810641},
doi = {10.1109/ICCAD.1999.810641},
timestamp = {Mon, 08 May 2023 21:43:38 +0200},
biburl = {https://dblp.org/rec/conf/iccad/MandoiuVG99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/soda/JainMVW99,
author = {Kamal Jain and
Ion I. Mandoiu and
Vijay V. Vazirani and
David P. Williamson},
editor = {Robert Endre Tarjan and
Tandy J. Warnow},
title = {A Primal-Dual Schema Based Approximation Algorithm for the Element
Connectivity Problem},
booktitle = {Proceedings of the Tenth Annual {ACM-SIAM} Symposium on Discrete Algorithms,
17-19 January 1999, Baltimore, Maryland, {USA}},
pages = {484--489},
publisher = {{ACM/SIAM}},
year = {1999},
url = {http://dl.acm.org/citation.cfm?id=314500.314869},
timestamp = {Thu, 05 Jul 2018 07:29:57 +0200},
biburl = {https://dblp.org/rec/conf/soda/JainMVW99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ipl/Mandoiu98,
author = {Ion I. Mandoiu},
title = {Optimum Extensions of Prefix Codes},
journal = {Inf. Process. Lett.},
volume = {66},
number = {1},
pages = {35--40},
year = {1998},
url = {https://doi.org/10.1016/S0020-0190(98)00026-X},
doi = {10.1016/S0020-0190(98)00026-X},
timestamp = {Fri, 26 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ipl/Mandoiu98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tit/JainMV98,
author = {Kamal Jain and
Ion I. Mandoiu and
Vijay V. Vazirani},
title = {The 'Art of Trellis Decoding' Is Computationally Hardi - For Large
Fields},
journal = {{IEEE} Trans. Inf. Theory},
volume = {44},
number = {3},
pages = {1211--1214},
year = {1998},
url = {https://doi.org/10.1109/18.669287},
doi = {10.1109/18.669287},
timestamp = {Tue, 10 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tit/JainMV98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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