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ORCIDBibTeX records: Núria López-Bigas
@article{DBLP:journals/bioinformatics/BonetCDHGLL22,
author = {Jos{\'{e}} Bonet and
Mandi Chen and
Marc Dabad and
Simon Heath and
Abel Gonzalez{-}Perez and
N{\'{u}}ria L{\'{o}}pez{-}Bigas and
Jens Lagergren},
title = {DeepMP: a deep learning tool to detect {DNA} base modifications on
Nanopore sequencing data},
journal = {Bioinform.},
volume = {38},
number = {5},
pages = {1235--1243},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btab745},
doi = {10.1093/BIOINFORMATICS/BTAB745},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BonetCDHGLL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/StobbeGLG22,
author = {Miranda D. Stobbe and
Abel Gonzalez{-}Perez and
N{\'{u}}ria L{\'{o}}pez{-}Bigas and
Ivo Glynne Gut},
title = {Ten simple rules for a successful international consortium in big
data omics},
journal = {PLoS Comput. Biol.},
volume = {18},
number = {10},
pages = {1010546},
year = {2022},
url = {https://doi.org/10.1371/journal.pcbi.1010546},
doi = {10.1371/JOURNAL.PCBI.1010546},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/StobbeGLG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BorgsmullerBMGL20,
author = {Nico Borgsm{\"{u}}ller and
Jos{\'{e}} Bonet and
Francesco Marass and
Abel Gonzalez{-}Perez and
N{\'{u}}ria L{\'{o}}pez{-}Bigas and
Niko Beerenwinkel},
title = {BnpC: Bayesian non-parametric clustering of single-cell mutation profiles},
journal = {Bioinform.},
volume = {36},
number = {19},
pages = {4854--4859},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btaa599},
doi = {10.1093/BIOINFORMATICS/BTAA599},
timestamp = {Mon, 10 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BorgsmullerBMGL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/RheinbayNAWSTHH20,
author = {Esther Rheinbay and
Morten Muhlig Nielsen and
Federico Abascal and
Jeremiah Wala and
Ofer Shapira and
Grace Tiao and
Henrik Hornsh{\o}j and
Julian M. Hess and
Randi Istrup Juul and
Ziao Lin and
Lars Feuerbach and
Radhakrishnan Sabarinathan and
Tobias Madsen and
Jaegil Kim and
Loris Mularoni and
Shimin Shuai and
Andr{\'{e}}s Lanz{\'{o}}s and
Carl Herrmann and
Yosef E. Maruvka and
Ciyue Shen and
Samirkumar B. Amin and
Pratiti Bandopadhayay and
Johanna Bertl and
Keith A. Boroevich and
John Busanovich and
Joana Carlevaro{-}Fita and
Dimple Chakravarty and
Calvin Wing Yiu Chan and
David Craft and
Priyanka Dhingra and
Klev Diamanti and
Nuno A. Fonseca and
Abel Gonzalez{-}Perez and
Qianyun Guo and
Mark P. Hamilton and
Nicholas J. Haradhvala and
Chen Hong and
Keren Isaev and
Todd A. Johnson and
Malene Juul and
Andr{\'{e}} Kahles and
Abdullah Kahraman and
Youngwook Kim and
Jan Komorowski and
Kiran Kumar and
Sushant Kumar and
Donghoon Lee and
Kjong{-}Van Lehmann and
Yilong Li and
Eric Minwei Liu and
Lucas Lochovsky and
Keunchil Park and
Oriol Pich and
Nicola D. Roberts and
Gordon Saksena and
Steven E. Schumacher and
Nikos Sidiropoulos and
Lina Sieverling and
Nasa Sinnott{-}Armstrong and
Chip Stewart and
David Tamborero and
Jose M. C. Tubio and
Husen M. Umer and
Liis Uusk{\"{u}}la{-}Reimand and
Claes Wadelius and
Lina Wadi and
Xiaotong Yao and
Cheng{-}Zhong Zhang and
Jing Zhang and
James E. Haber and
Asger Hobolth and
Marcin Imielinski and
Manolis Kellis and
Michael S. Lawrence and
Christian von Mering and
Hidewaki Nakagawa and
Benjamin J. Raphael and
Mark A. Rubin and
Chris Sander and
Lincoln D. Stein and
Joshua M. Stuart and
Tatsuhiko Tsunoda and
David A. Wheeler and
Rory Johnson and
J{\"{u}}ri Reimand and
Mark Gerstein and
Ekta Khurana and
Peter J. Campbell and
N{\'{u}}ria L{\'{o}}pez{-}Bigas and
Gary D. Bader and
Jonathan Barenboim and
Rameen Beroukhim and
S{\o}ren Brunak and
Ken Chen and
Jung Kyoon Choi and
Jordi Deu{-}Pons and
J. Lynn Fink and
Joan Frigola and
Carlo Gambacorti Passerini and
Dale W. Garsed and
Gad Getz and
Ivo Glynne Gut and
David Haan and
Arif Ozgun Harmanci and
Mohamed Helmy and
Ermin Hodzic and
Jos{\'{e}} M. G. Izarzugaza and
Jong K. Kim and
Jan O. Korbel and
Erik Larsson and
Shantao Li and
Xiaotong Li and
Shaoke Lou and
Kathleen Marchal and
I{\~{n}}igo Martincorena and
Alexander Mart{\'{\i}}nez{-}Fundichely and
Patrick D. McGillivray and
William Meyerson and
Ferran Mui{\~{n}}os and
Marta Paczkowska and
Kiejung Park and
Jakob Skou Pedersen and
Tirso Pons and
Sergio Pulido{-}Tamayo and
Iker Reyes{-}Salazar and
Matthew A. Reyna and
Carlota Rubio{-}Perez and
S{\"{u}}leyman Cenk Sahinalp and
Leonidas Salichos and
Mark Shackleton and
Raunak Shrestha and
Alfonso Valencia and
Miguel Vazquez and
Lieven P. C. Verbeke and
Jiayin Wang and
Jonathan Warrell and
Sebastian M. Waszak and
Joachim Weischenfeldt and
Guanming Wu and
Jun Yu and
Xuanping Zhang and
Yan Zhang and
Zhongming Zhao and
Lihua Zou and
Kadir C. Akdemir and
Eva G. Alvarez and
Adrian Baez{-}Ortega and
Paul C. Boutros and
David D. L. Bowtell and
Benedikt Brors and
Kathleen H. Burns and
Kin Chan and
Isidro Cort{\'{e}}s{-}Ciriano and
Ana Dueso{-}Barroso and
Andrew J. Dunford and
Paul A. Edwards and
Xavier Estivill and
Dariush Etemadmoghadam and
Milana Frenkel{-}Morgenstern and
Dmitry A. Gordenin and
Barbara Hutter and
David T. W. Jones and
Young Seok Ju and
Marat D. Kazanov and
Leszek J. Klimczak and
Youngil Koh and
Eunjung Alice Lee and
Jake June{-}Koo Lee and
Andy G. Lynch and
Geoff MacIntyre and
Florian Markowetz and
Matthew Meyerson and
Satoru Miyano and
Fabio C. P. Navarro and
Stephan Ossowski and
Peter J. Park and
John V. Pearson and
Montserrat Puiggr{\`{o}}s and
Karsten Rippe and
Steven A. Roberts and
Bernardo Rodriguez{-}Martin and
Ralph Scully and
David Torrents and
Izar Villasante and
Nicola Waddell and
Jeremiah A. Wala and
Lixing Yang and
Sung{-}Soo Yoon and
Jorge Zamora},
title = {Analyses of non-coding somatic drivers in 2,658 cancer whole genomes},
journal = {Nat.},
volume = {578},
number = {7793},
pages = {102--111},
year = {2020},
url = {https://doi.org/10.1038/s41586-020-1965-x},
doi = {10.1038/S41586-020-1965-X},
timestamp = {Thu, 11 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nature/RheinbayNAWSTHH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BorgsmullerBMGL20,
author = {Nico Borgsm{\"{u}}ller and
Jos{\'{e}} Bonet and
Francesco Marass and
Abel Gonzalez{-}Perez and
N{\'{u}}ria L{\'{o}}pez{-}Bigas and
Niko Beerenwinkel},
editor = {Russell Schwartz},
title = {Bayesian Non-parametric Clustering of Single-Cell Mutation Profiles},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {229--230},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_17},
doi = {10.1007/978-3-030-45257-5\_17},
timestamp = {Mon, 10 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/BorgsmullerBMGL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Arnedo-PacMMGL19,
author = {Claudia Arnedo{-}Pac and
Loris Mularoni and
Ferran Mui{\~{n}}os and
Abel Gonzalez{-}Perez and
N{\'{u}}ria L{\'{o}}pez{-}Bigas},
title = {OncodriveCLUSTL: a sequence-based clustering method to identify cancer
drivers},
journal = {Bioinform.},
volume = {35},
number = {22},
pages = {4788--4790},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz501},
doi = {10.1093/BIOINFORMATICS/BTZ501},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Arnedo-PacMMGL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Arnedo-PacMMGL19a,
author = {Claudia Arnedo{-}Pac and
Loris Mularoni and
Ferran Mui{\~{n}}os and
Abel Gonzalez{-}Perez and
N{\'{u}}ria L{\'{o}}pez{-}Bigas},
title = {OncodriveCLUSTL: a sequence-based clustering method to identify cancer
drivers},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5396},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz588},
doi = {10.1093/BIOINFORMATICS/BTZ588},
timestamp = {Fri, 14 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Arnedo-PacMMGL19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Deu-PonsSL14,
author = {Jordi Deu{-}Pons and
Michael P. Schroeder and
N{\'{u}}ria L{\'{o}}pez{-}Bigas},
title = {jHeatmap: an interactive heatmap viewer for the web},
journal = {Bioinform.},
volume = {30},
number = {12},
pages = {1757--1758},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu094},
doi = {10.1093/BIOINFORMATICS/BTU094},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Deu-PonsSL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchroederRTGL14,
author = {Michael P. Schroeder and
Carlota Rubio{-}Perez and
David Tamborero and
Abel Gonzalez{-}Perez and
N{\'{u}}ria L{\'{o}}pez{-}Bigas},
title = {OncodriveROLE classifies cancer driver genes in loss of function and
activating mode of action},
journal = {Bioinform.},
volume = {30},
number = {17},
pages = {549--555},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu467},
doi = {10.1093/BIOINFORMATICS/BTU467},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchroederRTGL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GobbiIDWTALGJS14,
author = {Andrea Gobbi and
Francesco Iorio and
Kevin J. Dawson and
David C. Wedge and
David Tamborero and
Ludmil B. Alexandrov and
N{\'{u}}ria L{\'{o}}pez{-}Bigas and
Mathew Garnett and
Giuseppe Jurman and
Julio Saez{-}Rodriguez},
title = {Fast randomization of large genomic datasets while preserving alteration
counts},
journal = {Bioinform.},
volume = {30},
number = {17},
pages = {617--623},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu474},
doi = {10.1093/BIOINFORMATICS/BTU474},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GobbiIDWTALGJS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TamboreroGL13,
author = {David Tamborero and
Abel Gonzalez{-}Perez and
N{\'{u}}ria L{\'{o}}pez{-}Bigas},
title = {OncodriveCLUST: exploiting the positional clustering of somatic mutations
to identify cancer genes},
journal = {Bioinform.},
volume = {29},
number = {18},
pages = {2238--2244},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt395},
doi = {10.1093/BIOINFORMATICS/BTT395},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TamboreroGL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Rafael-PalouSL12,
author = {Xavier Rafael Palou and
Michael P. Schroeder and
N{\'{u}}ria L{\'{o}}pez{-}Bigas},
title = {SVGMap: configurable image browser for experimental data},
journal = {Bioinform.},
volume = {28},
number = {1},
pages = {119--120},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr581},
doi = {10.1093/BIOINFORMATICS/BTR581},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Rafael-PalouSL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NgCSGGLBHS12,
author = {Sam Ng and
Eric A. Collisson and
Artem Sokolov and
Theodore Goldstein and
Abel Gonzalez{-}Perez and
N{\'{u}}ria L{\'{o}}pez{-}Bigas and
Christopher Benz and
David Haussler and
Joshua M. Stuart},
title = {{PARADIGM-SHIFT} predicts the function of mutations in multiple cancers
using pathway impact analysis},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {640--646},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts402},
doi = {10.1093/BIOINFORMATICS/BTS402},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NgCSGGLBHS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/GubermanAA11,
author = {Jonathan M. Guberman and
Jiye Ai and
Olivier Arnaiz and
Joachim Baran and
Andrew Blake and
Richard A. Baldock and
Claude Chelala and
David Croft and
Anthony Cros and
Rosalind J. Cutts and
Alex Di G{\'{e}}nova and
Simon A. Forbes and
Takatomo Fujisawa and
Emanuela Gadaleta and
David M. Goodstein and
Gunes Gundem and
Bernard Haggarty and
Syed Haider and
Matthew Hall and
Todd W. Harris and
Robin Haw and
Shen Hu and
Simon J. Hubbard and
Jack Hsu and
Vivek Iyer and
Philip Jones and
Toshiaki Katayama and
Rhoda Kinsella and
Lei Kong and
Daniel Lawson and
Yong Liang and
N{\'{u}}ria L{\'{o}}pez{-}Bigas and
Jie Luo and
Michael J. Lush and
Jeremy C. Mason and
Fran{\c{c}}ois Moreews and
Nelson Ndegwa and
Darren J. Oakley and
Christian Perez{-}Llamas and
Michael Primig and
Elena Rivkin and
Steven Rosanoff and
Rebecca Shepherd and
Reinhard Simon and
William C. Skarnes and
Damian Smedley and
Linda Sperling and
William Spooner and
Peter Stevenson and
Kevin R. Stone and
Jon W. Teague and
Jun Wang and
Jianxin Wang and
Brett Whitty and
David Tai Wai Wong and
Marie Wong{-}Erasmus and
Long Yao and
Ken Youens{-}Clark and
Christina K. Yung and
Junjun Zhang and
Arek Kasprzyk},
title = {BioMart Central Portal: an open database network for the biological
community},
journal = {Database J. Biol. Databases Curation},
volume = {2011},
year = {2011},
url = {https://doi.org/10.1093/database/bar041},
doi = {10.1093/DATABASE/BAR041},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/GubermanAA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/Perez-LlamasGL11,
author = {Christian Perez{-}Llamas and
Gunes Gundem and
N{\'{u}}ria L{\'{o}}pez{-}Bigas},
title = {Integrative Cancer Genomics (IntOGen) in Biomart},
journal = {Database J. Biol. Databases Curation},
volume = {2011},
year = {2011},
url = {https://doi.org/10.1093/database/bar039},
doi = {10.1093/DATABASE/BAR039},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/Perez-LlamasGL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/FurneyMKHL08,
author = {Simon J. Furney and
Stephen F. Madden and
Tomasz A. Kisiel and
Desmond G. Higgins and
N{\'{u}}ria L{\'{o}}pez{-}Bigas},
title = {Distinct Patterns in the Regulation and Evolution of Human Cancer
Genes},
journal = {Silico Biol.},
volume = {8},
number = {1},
pages = {33--46},
year = {2008},
url = {http://content.iospress.com/articles/in-silico-biology/isb00341},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/FurneyMKHL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmpb/CalvoLFLL07,
author = {Borja Calvo and
N{\'{u}}ria L{\'{o}}pez{-}Bigas and
Simon J. Furney and
Pedro Larra{\~{n}}aga and
Jos{\'{e}} Antonio Lozano},
title = {A partially supervised classification approach to dominant and recessive
human disease gene prediction},
journal = {Comput. Methods Programs Biomed.},
volume = {85},
number = {3},
pages = {229--237},
year = {2007},
url = {https://doi.org/10.1016/j.cmpb.2006.12.003},
doi = {10.1016/J.CMPB.2006.12.003},
timestamp = {Wed, 28 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cmpb/CalvoLFLL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Lopez-BigasBO06,
author = {N{\'{u}}ria L{\'{o}}pez{-}Bigas and
Benjamin J. Blencowe and
Christos A. Ouzounis},
title = {Highly consistent patterns for inherited human diseases at the molecular
level},
journal = {Bioinform.},
volume = {22},
number = {3},
pages = {269--277},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/bti781},
doi = {10.1093/BIOINFORMATICS/BTI781},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Lopez-BigasBO06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GoldovskyJAACDELPSTKO05,
author = {Leon Goldovsky and
Paul J. Janssen and
Dag G. Ahr{\'{e}}n and
Benjamin Audit and
Ildefonso Cases and
Nikos Darzentas and
Anton J. Enright and
N{\'{u}}ria L{\'{o}}pez{-}Bigas and
Jos{\'{e}} M. Peregr{\'{\i}}n{-}Alvarez and
Mike Smith and
Sophia Tsoka and
Victor Kunin and
Christos A. Ouzounis},
title = {CoGenT++: an extensive and extensible data environment for computational
genomics},
journal = {Bioinform.},
volume = {21},
number = {19},
pages = {3806--3810},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti579},
doi = {10.1093/BIOINFORMATICS/BTI579},
timestamp = {Mon, 11 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GoldovskyJAACDELPSTKO05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/jbi/Lopez-BigasO04,
author = {N{\'{u}}ria L{\'{o}}pez{-}Bigas and
Christos A. Ouzounis},
editor = {Xavier Messeguer and
Gabriel Valiente},
title = {Properties of Genes involved in Human Genetic Disease},
booktitle = {Proceedings of the 5th Annual Spanish Bioinformatics Conference, Barcelona,
Catalonia, Spain, November 29-30, 2004},
pages = {45--46},
publisher = {Technical University of Catalonia, Barcelona},
year = {2004},
timestamp = {Mon, 15 Nov 2004 12:43:54 +0100},
biburl = {https://dblp.org/rec/conf/jbi/Lopez-BigasO04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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