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ORCIDBibTeX records: Dima Kozakov
@article{DBLP:journals/jcisd/Bekar-Cesaretli24,
author = {Ayse A. Bekar{-}Cesaretli and
Omeir Khan and
Thu Nguyen and
Dima Kozakov and
Diane Joseph{-}McCarthy and
Sandor Vajda},
title = {Conservation of Hot Spots and Ligand Binding Sites in Protein Models
by AlphaFold2},
journal = {J. Chem. Inf. Model.},
volume = {64},
number = {3},
pages = {960--973},
year = {2024},
url = {https://doi.org/10.1021/acs.jcim.3c01761},
doi = {10.1021/ACS.JCIM.3C01761},
timestamp = {Tue, 16 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/Bekar-Cesaretli24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/CaoIJPCK23,
author = {Xin Cao and
Mikhail Ignatov and
George Jones and
Sara N. Pollock and
Evangelos A. Coutsias and
Dima Kozakov},
editor = {May D. Wang and
Byung{-}Jun Yoon},
title = {Numerically stable algorithm for Inverse Kinematics of 6R problem
and its applications to macrocycles},
booktitle = {Proceedings of the 14th {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2023, Houston,
TX, USA, September 3-6, 2023},
pages = {84:1},
publisher = {{ACM}},
year = {2023},
url = {https://doi.org/10.1145/3584371.3613040},
doi = {10.1145/3584371.3613040},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/CaoIJPCK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/WakefieldBKKV22,
author = {Amanda E. Wakefield and
D{\'{a}}vid Bajusz and
Dima Kozakov and
Gy{\"{o}}rgy M. Keser{\"{u}} and
Sandor Vajda},
title = {Conservation of Allosteric Ligand Binding Sites in G-Protein Coupled
Receptors},
journal = {J. Chem. Inf. Model.},
volume = {62},
number = {20},
pages = {4937--4954},
year = {2022},
url = {https://doi.org/10.1021/acs.jcim.2c00209},
doi = {10.1021/ACS.JCIM.2C00209},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/WakefieldBKKV22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/KotelnikovALIPB20,
author = {Sergei Kotelnikov and
Andrey Alekseenko and
Cong Liu and
Mikhail Ignatov and
Dzmitry Padhorny and
Emiliano Brini and
Mark Lukin and
Evangelos A. Coutsias and
Ken A. Dill and
Dima Kozakov},
title = {Sampling and refinement protocols for template-based macrocycle docking:
2018 {D3R} Grand Challenge 4},
journal = {J. Comput. Aided Mol. Des.},
volume = {34},
number = {2},
pages = {179--189},
year = {2020},
url = {https://doi.org/10.1007/s10822-019-00257-1},
doi = {10.1007/S10822-019-00257-1},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcamd/KotelnikovALIPB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/WakefieldYBCKKW20,
author = {Amanda E. Wakefield and
Christine Yueh and
Dmitri Beglov and
Marcelo Santos Castilho and
Dima Kozakov and
Gy{\"{o}}rgy M. Keser{\"{u}} and
Adrian Whitty and
Sandor Vajda},
title = {Benchmark Sets for Binding Hot Spot Identification in Fragment-Based
Ligand Discovery},
journal = {J. Chem. Inf. Model.},
volume = {60},
number = {12},
pages = {6612--6623},
year = {2020},
url = {https://doi.org/10.1021/acs.jcim.0c00877},
doi = {10.1021/ACS.JCIM.0C00877},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/WakefieldYBCKKW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/IgnatovLASPKKGK19,
author = {Mikhail Ignatov and
Cong Liu and
Andrey Alekseenko and
Zhuyezi Sun and
Dzmitry Padhorny and
Sergei Kotelnikov and
Andrey M. Kazennov and
Ivan Grebenkin and
Yaroslav Kholodov and
Istvan Kolosvari and
Alberto P{\'{e}}rez and
Ken A. Dill and
Dima Kozakov},
title = {Monte Carlo on the manifold and {MD} refinement for binding pose prediction
of protein-ligand complexes: 2017 {D3R} Grand Challenge},
journal = {J. Comput. Aided Mol. Des.},
volume = {33},
number = {1},
pages = {119--127},
year = {2019},
url = {https://doi.org/10.1007/s10822-018-0176-0},
doi = {10.1007/S10822-018-0176-0},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcamd/IgnatovLASPKKGK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/PadhornyHMMMABK18,
author = {Dzmitry Padhorny and
David R. Hall and
Hanieh Mirzaei and
Artem B. Mamonov and
Mohammad Moghadasi and
Andrey Alekseenko and
Dmitri Beglov and
Dima Kozakov},
title = {Protein-ligand docking using {FFT} based sampling: {D3R} case study},
journal = {J. Comput. Aided Mol. Des.},
volume = {32},
number = {1},
pages = {225--230},
year = {2018},
url = {https://doi.org/10.1007/s10822-017-0069-7},
doi = {10.1007/S10822-017-0069-7},
timestamp = {Thu, 16 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcamd/PadhornyHMMMABK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PorterXBBASK17,
author = {Kathryn A. Porter and
Bing Xia and
Dmitri Beglov and
Tanggis Bohnuud and
Nawsad Alam and
Ora Schueler{-}Furman and
Dima Kozakov},
title = {ClusPro PeptiDock: efficient global docking of peptide recognition
motifs using {FFT}},
journal = {Bioinform.},
volume = {33},
number = {20},
pages = {3299--3301},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx216},
doi = {10.1093/BIOINFORMATICS/BTX216},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PorterXBBASK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/AlamGXPKS17,
author = {Nawsad Alam and
Oriel Goldstein and
Bing Xia and
Kathryn A. Porter and
Dima Kozakov and
Ora Schueler{-}Furman},
title = {High-resolution global peptide-protein docking using fragments-based
PIPER-FlexPepDock},
journal = {PLoS Comput. Biol.},
volume = {13},
number = {12},
year = {2017},
url = {https://doi.org/10.1371/journal.pcbi.1005905},
doi = {10.1371/JOURNAL.PCBI.1005905},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/AlamGXPKS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XiaVK16,
author = {Bing Xia and
Sandor Vajda and
Dima Kozakov},
title = {Accounting for pairwise distance restraints in FFT-based protein-protein
docking},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3342--3344},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw306},
doi = {10.1093/BIOINFORMATICS/BTW306},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XiaVK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/MamonovMMZGBVPV16,
author = {Artem B. Mamonov and
Mohammad Moghadasi and
Hanieh Mirzaei and
Shahrooz Zarbafian and
Laurie E. Grove and
Tanggis Bohnuud and
Pirooz Vakili and
Ioannis Ch. Paschalidis and
Sandor Vajda and
Dima Kozakov},
title = {Focused grid-based resampling for protein docking and mapping},
journal = {J. Comput. Chem.},
volume = {37},
number = {11},
pages = {961--970},
year = {2016},
url = {https://doi.org/10.1002/jcc.24273},
doi = {10.1002/JCC.24273},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcc/MamonovMMZGBVPV16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/XiaMLASPVK15,
author = {Bing Xia and
Artem B. Mamonov and
Seppe Leysen and
Karen N. Allen and
Sergei V. Strelkov and
Ioannis Ch. Paschalidis and
Sandor Vajda and
Dima Kozakov},
title = {Accounting for observed small angle X-ray scattering profile in the
protein-protein docking server cluspro},
journal = {J. Comput. Chem.},
volume = {36},
number = {20},
pages = {1568--1572},
year = {2015},
url = {https://doi.org/10.1002/jcc.23952},
doi = {10.1002/JCC.23952},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcc/XiaMLASPVK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/MoghadasiMMVVPK15,
author = {Mohammad Moghadasi and
Hanieh Mirzaei and
Artem B. Mamonov and
Pirooz Vakili and
Sandor Vajda and
Ioannis Ch. Paschalidis and
Dima Kozakov},
title = {The Impact of Side-Chain Packing on Protein Docking Refinement},
journal = {J. Chem. Inf. Model.},
volume = {55},
number = {4},
pages = {872--881},
year = {2015},
url = {https://doi.org/10.1021/ci500380a},
doi = {10.1021/CI500380A},
timestamp = {Wed, 18 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/MoghadasiMMVVPK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/MottarellaBBNKV14,
author = {Scott E. Mottarella and
Dmitri Beglov and
Natalia Beglova and
Matthew A. Nugent and
Dima Kozakov and
Sandor Vajda},
title = {Docking Server for the Identification of Heparin Binding Sites on
Proteins},
journal = {J. Chem. Inf. Model.},
volume = {54},
number = {7},
pages = {2068--2078},
year = {2014},
url = {https://doi.org/10.1021/ci500115j},
doi = {10.1021/CI500115J},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/MottarellaBBNKV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BohnuudKV14,
author = {Tanggis Bohnuud and
Dima Kozakov and
Sandor Vajda},
title = {Evidence of Conformational Selection Driving the Formation of Ligand
Binding Sites in Protein-Protein Interfaces},
journal = {PLoS Comput. Biol.},
volume = {10},
number = {10},
year = {2014},
url = {https://doi.org/10.1371/journal.pcbi.1003872},
doi = {10.1371/JOURNAL.PCBI.1003872},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/BohnuudKV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cdc/NanMVVKP14,
author = {Feng Nan and
Mohammad Moghadasi and
Pirooz Vakili and
Sandor Vajda and
Dima Kozakov and
Ioannis Ch. Paschalidis},
title = {A Subspace Semi-Definite programming-based Underestimation {(SSDU)}
method for stochastic global optimization in protein docking},
booktitle = {53rd {IEEE} Conference on Decision and Control, {CDC} 2014, Los Angeles,
CA, USA, December 15-17, 2014},
pages = {4623--4628},
publisher = {{IEEE}},
year = {2014},
url = {https://doi.org/10.1109/CDC.2014.7040111},
doi = {10.1109/CDC.2014.7040111},
timestamp = {Fri, 04 Mar 2022 13:29:15 +0100},
biburl = {https://dblp.org/rec/conf/cdc/NanMVVKP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cdc/VakiliMZPKV14,
author = {Pirooz Vakili and
Hanieh Mirzaei and
Shahrooz Zarbafian and
Ioannis Ch. Paschalidis and
Dima Kozakov and
Sandor Vajda},
title = {Optimization on the space of rigid and flexible motions: An alternative
manifold optimization approach},
booktitle = {53rd {IEEE} Conference on Decision and Control, {CDC} 2014, Los Angeles,
CA, USA, December 15-17, 2014},
pages = {5825--5830},
publisher = {{IEEE}},
year = {2014},
url = {https://doi.org/10.1109/CDC.2014.7040301},
doi = {10.1109/CDC.2014.7040301},
timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cdc/VakiliMZPKV14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GroveHBVK13,
author = {Laurie E. Grove and
David R. Hall and
Dmitri Beglov and
Sandor Vajda and
Dima Kozakov},
title = {FTFlex: accounting for binding site flexibility to improve fragment-based
identification of druggable hot spots},
journal = {Bioinform.},
volume = {29},
number = {9},
pages = {1218--1219},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt102},
doi = {10.1093/BIOINFORMATICS/BTT102},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GroveHBVK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cdc/MoghadasiKVVP13,
author = {Mohammad Moghadasi and
Dima Kozakov and
Pirooz Vakili and
Sandor Vajda and
Ioannis Ch. Paschalidis},
title = {A new distributed algorithm for side-chain positioning in the process
of protein docking},
booktitle = {Proceedings of the 52nd {IEEE} Conference on Decision and Control,
{CDC} 2013, Florence, Italy, December 10-13, 2013},
pages = {739--744},
publisher = {{IEEE}},
year = {2013},
url = {https://doi.org/10.1109/CDC.2013.6759970},
doi = {10.1109/CDC.2013.6759970},
timestamp = {Fri, 04 Mar 2022 13:29:02 +0100},
biburl = {https://dblp.org/rec/conf/cdc/MoghadasiKVVP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cdc/MirzaeiVMBPVKV13,
author = {Hanieh Mirzaei and
Elizabeth A. Villar and
Scott E. Mottarella and
Dmitri Beglov and
Ioannis Ch. Paschalidis and
Sandor Vajda and
Dima Kozakov and
Pirooz Vakili},
title = {Flexible refinement of protein-ligand docking on manifolds},
booktitle = {Proceedings of the 52nd {IEEE} Conference on Decision and Control,
{CDC} 2013, Florence, Italy, December 10-13, 2013},
pages = {1392--1397},
publisher = {{IEEE}},
year = {2013},
url = {https://doi.org/10.1109/CDC.2013.6760077},
doi = {10.1109/CDC.2013.6760077},
timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cdc/MirzaeiVMBPVKV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NganHZGKV12,
author = {Chi{-}Ho Ngan and
David R. Hall and
Brandon S. Zerbe and
Laurie E. Grove and
Dima Kozakov and
Sandor Vajda},
title = {FTSite: high accuracy detection of ligand binding sites on unbound
protein structures},
journal = {Bioinform.},
volume = {28},
number = {2},
pages = {286--287},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr651},
doi = {10.1093/BIOINFORMATICS/BTR651},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NganHZGKV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrenkeHCCBBSVK12,
author = {Ryan Brenke and
David R. Hall and
Gwo{-}Yu Chuang and
Stephen R. Comeau and
Tanggis Bohnuud and
Dmitri Beglov and
Ora Schueler{-}Furman and
Sandor Vajda and
Dima Kozakov},
title = {Application of asymmetric statistical potentials to antibody-protein
docking},
journal = {Bioinform.},
volume = {28},
number = {20},
pages = {2608--2614},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts493},
doi = {10.1093/BIOINFORMATICS/BTS493},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrenkeHCCBBSVK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/HallNZKV12,
author = {David R. Hall and
Chi{-}Ho Ngan and
Brandon S. Zerbe and
Dima Kozakov and
Sandor Vajda},
title = {Hot Spot Analysis for Driving the Development of Hits into Leads in
Fragment-Based Drug Discovery},
journal = {J. Chem. Inf. Model.},
volume = {52},
number = {1},
pages = {199--209},
year = {2012},
url = {https://doi.org/10.1021/ci200468p},
doi = {10.1021/CI200468P},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/HallNZKV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/ZerbeHVWK12,
author = {Brandon S. Zerbe and
David R. Hall and
Sandor Vajda and
Adrian Whitty and
Dima Kozakov},
title = {Relationship between Hot Spot Residues and Ligand Binding Hot Spots
in Protein-Protein Interfaces},
journal = {J. Chem. Inf. Model.},
volume = {52},
number = {8},
pages = {2236--2244},
year = {2012},
url = {https://doi.org/10.1021/ci300175u},
doi = {10.1021/CI300175U},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/ZerbeHVWK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NganBMBVHKV12,
author = {Chi{-}Ho Ngan and
Tanggis Bohnuud and
Scott E. Mottarella and
Dmitri Beglov and
Elizabeth A. Villar and
David R. Hall and
Dima Kozakov and
Sandor Vajda},
title = {{FTMAP:} extended protein mapping with user-selected probe molecules},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Web-Server-Issue},
pages = {271--275},
year = {2012},
url = {https://doi.org/10.1093/nar/gks441},
doi = {10.1093/NAR/GKS441},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NganBMBVHKV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cdc/MoghadasiKMVVP12,
author = {Mohammad Moghadasi and
Dima Kozakov and
Artem B. Mamonov and
Pirooz Vakili and
Sandor Vajda and
Ioannis Ch. Paschalidis},
title = {A message passing approach to Side Chain Positioning with applications
in protein docking refinement},
booktitle = {Proceedings of the 51th {IEEE} Conference on Decision and Control,
{CDC} 2012, December 10-13, 2012, Maui, HI, {USA}},
pages = {2310--2315},
publisher = {{IEEE}},
year = {2012},
url = {https://doi.org/10.1109/CDC.2012.6426600},
doi = {10.1109/CDC.2012.6426600},
timestamp = {Fri, 04 Mar 2022 13:28:47 +0100},
biburl = {https://dblp.org/rec/conf/cdc/MoghadasiKMVVP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cdc/MirzaeiKBPVV12,
author = {Hanieh Mirzaei and
Dima Kozakov and
Dmitri Beglov and
Ioannis Ch. Paschalidis and
Sandor Vajda and
Pirooz Vakili},
title = {A new approach to rigid body minimization with application to molecular
docking},
booktitle = {Proceedings of the 51th {IEEE} Conference on Decision and Control,
{CDC} 2012, December 10-13, 2012, Maui, HI, {USA}},
pages = {2983--2988},
publisher = {{IEEE}},
year = {2012},
url = {https://doi.org/10.1109/CDC.2012.6426267},
doi = {10.1109/CDC.2012.6426267},
timestamp = {Fri, 30 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cdc/MirzaeiKBPVV12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrenkeKCBHLMV09,
author = {Ryan Brenke and
Dima Kozakov and
Gwo{-}Yu Chuang and
Dmitri Beglov and
David R. Hall and
Melissa R. Landon and
Carla Mattos and
Sandor Vajda},
title = {Fragment-based identification of druggable 'hot spots' of proteins
using Fourier domain correlation techniques},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {621--627},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp036},
doi = {10.1093/BIOINFORMATICS/BTP036},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrenkeKCBHLMV09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/LandonLHJCOKBCBVPR09,
author = {Melissa R. Landon and
Raquel L. Lieberman and
Quyen Q. Hoang and
Shulin Ju and
Jose M. M. Caaveiro and
Susan D. Orwig and
Dima Kozakov and
Ryan Brenke and
Gwo{-}Yu Chuang and
Dmitri Beglov and
Sandor Vajda and
Gregory A. Petsko and
Dagmar Ringe},
title = {Detection of ligand binding hot spots on protein surfaces via fragment-based
methods: application to {DJ-1} and glucocerebrosidase},
journal = {J. Comput. Aided Mol. Des.},
volume = {23},
number = {8},
pages = {491--500},
year = {2009},
url = {https://doi.org/10.1007/s10822-009-9283-2},
doi = {10.1007/S10822-009-9283-2},
timestamp = {Thu, 16 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcamd/LandonLHJCOKBCBVPR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RitchieKV08,
author = {David W. Ritchie and
Dima Kozakov and
Sandor Vajda},
title = {Accelerating and focusing protein-protein docking correlations using
multi-dimensional rotational {FFT} generating functions},
journal = {Bioinform.},
volume = {24},
number = {17},
pages = {1865--1873},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn334},
doi = {10.1093/BIOINFORMATICS/BTN334},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RitchieKV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/KayaKV08,
author = {Taner Kaya and
Dima Kozakov and
Sandor Vajda},
editor = {Hamid R. Arabnia and
Mary Qu Yang and
Jack Y. Yang},
title = {Clustering versus Scoring for the Identification of Near-Native Poses
in Protein-Ligand Docking},
booktitle = {International Conference on Bioinformatics {\&} Computational
Biology, {BIOCOMP} 2008, July 14-17, 2008, Las Vegas Nevada, USA,
2 Volumes},
pages = {1028--1032},
publisher = {{CSREA} Press},
year = {2008},
timestamp = {Fri, 06 Feb 2009 11:52:50 +0100},
biburl = {https://dblp.org/rec/conf/biocomp/KayaKV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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