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ORCIDBibTeX records: Uri Keich
@inproceedings{DBLP:conf/recomb/FreestoneKNK24,
author = {Jack Freestone and
Lukas K{\"{a}}ll and
William Stafford Noble and
Uri Keich},
editor = {Jian Ma},
title = {Semi-supervised Learning While Controlling the {FDR} with an Application
to Tandem Mass Spectrometry Analysis},
booktitle = {Research in Computational Molecular Biology - 28th Annual International
Conference, {RECOMB} 2024, Cambridge, MA, USA, April 29 - May 2, 2024,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14758},
pages = {448--453},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-1-0716-3989-4\_50},
doi = {10.1007/978-1-0716-3989-4\_50},
timestamp = {Tue, 18 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/FreestoneKNK24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/toms/PeresLK21,
author = {Noah Peres and
Andrew Ray Lee and
Uri Keich},
title = {Exactly Computing the Tail of the Poisson-Binomial Distribution},
journal = {{ACM} Trans. Math. Softw.},
volume = {47},
number = {4},
pages = {35:1--35:19},
year = {2021},
url = {https://doi.org/10.1145/3460774},
doi = {10.1145/3460774},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/toms/PeresLK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/EmeryHNK20,
author = {Kristen Emery and
Syamand Hasam and
William Stafford Noble and
Uri Keich},
editor = {Russell Schwartz},
title = {Multiple Competition-Based {FDR} Control and Its Application to Peptide
Detection},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {54--71},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_4},
doi = {10.1007/978-3-030-45257-5\_4},
timestamp = {Mon, 04 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/EmeryHNK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KeichN17,
author = {Uri Keich and
William Stafford Noble},
editor = {S{\"{u}}leyman Cenk Sahinalp},
title = {Progressive Calibration and Averaging for Tandem Mass Spectrometry
Statistical Confidence Estimation: Why Settle for a Single Decoy?},
booktitle = {Research in Computational Molecular Biology - 21st Annual International
Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10229},
pages = {99--116},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-56970-3\_7},
doi = {10.1007/978-3-319-56970-3\_7},
timestamp = {Sat, 30 May 2020 20:04:52 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KeichN17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/csda/WilsonK16,
author = {Huon Wilson and
Uri Keich},
title = {Accurate pairwise convolutions of non-negative vectors via {FFT}},
journal = {Comput. Stat. Data Anal.},
volume = {101},
pages = {300--315},
year = {2016},
url = {https://doi.org/10.1016/j.csda.2016.03.010},
doi = {10.1016/J.CSDA.2016.03.010},
timestamp = {Tue, 18 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/csda/WilsonK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ManescuK16,
author = {David Manescu and
Uri Keich},
title = {A Symmetric Length-Aware Enrichment Test},
journal = {J. Comput. Biol.},
volume = {23},
number = {6},
pages = {508--525},
year = {2016},
url = {https://doi.org/10.1089/cmb.2016.0038},
doi = {10.1089/CMB.2016.0038},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ManescuK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ManescuK15,
author = {David Manescu and
Uri Keich},
editor = {Teresa M. Przytycka},
title = {A Symmetric Length-Aware Enrichment Test},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {224--242},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_23},
doi = {10.1007/978-3-319-16706-0\_23},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ManescuK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TanakaBK14,
author = {Emi Tanaka and
Timothy L. Bailey and
Uri Keich},
title = {Improving {MEME} via a two-tiered significance analysis},
journal = {Bioinform.},
volume = {30},
number = {14},
pages = {1965--1973},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu163},
doi = {10.1093/BIOINFORMATICS/BTU163},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TanakaBK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TanakaBGNK11,
author = {Emi Tanaka and
Timothy L. Bailey and
Charles E. Grant and
William Stafford Noble and
Uri Keich},
title = {Improved similarity scores for comparing motifs},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1603--1609},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr257},
doi = {10.1093/BIOINFORMATICS/BTR257},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TanakaBGNK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/NgK11,
author = {Patrick Ng and
Uri Keich},
title = {Alignment Constrained Sampling},
journal = {J. Comput. Biol.},
volume = {18},
number = {2},
pages = {155--168},
year = {2011},
url = {https://doi.org/10.1089/cmb.2010.0220},
doi = {10.1089/CMB.2010.0220},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/NgK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cstat/NagarajanK09,
author = {Niranjan Nagarajan and
Uri Keich},
title = {Reliability and efficiency of algorithms for computing the significance
of the Mann-Whitney test},
journal = {Comput. Stat.},
volume = {24},
number = {4},
pages = {605},
year = {2009},
url = {https://doi.org/10.1007/s00180-009-0148-x},
doi = {10.1007/S00180-009-0148-X},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cstat/NagarajanK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NagarajanK08,
author = {Niranjan Nagarajan and
Uri Keich},
title = {{FAST:} Fourier transform based algorithms for significance testing
of ungapped multiple alignments},
journal = {Bioinform.},
volume = {24},
number = {4},
pages = {577--578},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btm594},
doi = {10.1093/BIOINFORMATICS/BTM594},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NagarajanK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NgK08,
author = {Patrick Ng and
Uri Keich},
title = {{GIMSAN:} a Gibbs motif finder with significance analysis},
journal = {Bioinform.},
volume = {24},
number = {19},
pages = {2256--2257},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn408},
doi = {10.1093/BIOINFORMATICS/BTN408},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NgK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KeichGGBLDT08,
author = {Uri Keich and
Hong Gao and
Jeffrey S. Garretson and
Anand Bhaskar and
Ivan Liachko and
Justin Donato and
Bik K. Tye},
title = {Computational detection of significant variation in binding affinity
across two sets of sequences with application to the analysis of replication
origins in yeast},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-372},
doi = {10.1186/1471-2105-9-372},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KeichGGBLDT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZhiKPHT07,
author = {Degui Zhi and
Uri Keich and
Pavel A. Pevzner and
Steffen Heber and
Haixu Tang},
title = {Correcting Base-Assignment Errors in Repeat Regions of Shotgun Assembly},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {4},
number = {1},
pages = {54--64},
year = {2007},
url = {https://doi.org/10.1109/TCBB.2007.1005},
doi = {10.1109/TCBB.2007.1005},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZhiKPHT07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/NgNJK06,
author = {Patrick Ng and
Niranjan Nagarajan and
Neil Jones and
Uri Keich},
title = {Apples to apples: improving the performance of motif finders and their
significance analysis in the Twilight Zone},
booktitle = {Proceedings 14th International Conference on Intelligent Systems for
Molecular Biology 2006, Fortaleza, Brazil, August 6-10, 2006},
pages = {393--401},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl245},
doi = {10.1093/BIOINFORMATICS/BTL245},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/NgNJK06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Keich05,
author = {Uri Keich},
title = {sFFT: {A} Faster Accurate Computation of the p-Value of the Entropy
Score},
journal = {J. Comput. Biol.},
volume = {12},
number = {4},
pages = {416--430},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.416},
doi = {10.1089/CMB.2005.12.416},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Keich05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcss/BuhlerKS05,
author = {Jeremy Buhler and
Uri Keich and
Yanni Sun},
title = {Designing seeds for similarity search in genomic {DNA}},
journal = {J. Comput. Syst. Sci.},
volume = {70},
number = {3},
pages = {342--363},
year = {2005},
url = {https://doi.org/10.1016/j.jcss.2004.12.003},
doi = {10.1016/J.JCSS.2004.12.003},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcss/BuhlerKS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/NagarajanJK05,
author = {Niranjan Nagarajan and
Neil Jones and
Uri Keich},
title = {Computing the P-value of the information content from an alignment
of multiple sequences},
booktitle = {Proceedings Thirteenth International Conference on Intelligent Systems
for Molecular Biology 2005, Detroit, MI, USA, 25-29 June 2005},
pages = {311--318},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti1044},
doi = {10.1093/BIOINFORMATICS/BTI1044},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/NagarajanJK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dam/KeichLMT04,
author = {Uri Keich and
Ming Li and
Bin Ma and
John Tromp},
title = {On spaced seeds for similarity search},
journal = {Discret. Appl. Math.},
volume = {138},
number = {3},
pages = {253--263},
year = {2004},
url = {https://doi.org/10.1016/S0166-218X(03)00382-2},
doi = {10.1016/S0166-218X(03)00382-2},
timestamp = {Mon, 13 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dam/KeichLMT04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/KeichN04,
author = {Uri Keich and
Niranjan Nagarajan},
editor = {Inge Jonassen and
Junhyong Kim},
title = {A Faster Reliable Algorithm to Estimate the p-Value of the Multinomial
llr Statistic},
booktitle = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
Bergen, Norway, September 17-21, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3240},
pages = {111--122},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30219-3\_10},
doi = {10.1007/978-3-540-30219-3\_10},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/KeichN04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/EskinKGP03,
author = {Eleazar Eskin and
Uri Keich and
Mikhail S. Gelfand and
Pavel A. Pevzner},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Genome-Wide Analysis of Bacterial Promoter Regions},
booktitle = {Proceedings of the 8th Pacific Symposium on Biocomputing, {PSB} 2003,
Lihue, Hawaii, USA, January 3-7, 2003},
pages = {29--40},
year = {2003},
url = {http://psb.stanford.edu/psb-online/proceedings/psb03/eskin.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/EskinKGP03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BuhlerKS03,
author = {Jeremy Buhler and
Uri Keich and
Yanni Sun},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Designing seeds for similarity search in genomic {DNA}},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {67--75},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640083},
doi = {10.1145/640075.640083},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/BuhlerKS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KeichP02,
author = {Uri Keich and
Pavel A. Pevzner},
title = {Finding motifs in the twilight zone},
journal = {Bioinform.},
volume = {18},
number = {10},
pages = {1374--1381},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.10.1374},
doi = {10.1093/BIOINFORMATICS/18.10.1374},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KeichP02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KeichP02a,
author = {Uri Keich and
Pavel A. Pevzner},
title = {U Subtle motifs: defining the limits of motif finding algorithms},
journal = {Bioinform.},
volume = {18},
number = {10},
pages = {1382--1390},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.10.1382},
doi = {10.1093/BIOINFORMATICS/18.10.1382},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KeichP02a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KeichP02,
author = {Uri Keich and
Pavel A. Pevzner},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Finding motifs in the twilight zone},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {195--204},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565222},
doi = {10.1145/565196.565222},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KeichP02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dm/AharoniK96,
author = {Ron Aharoni and
Uri Keich},
title = {A generalization of the Ahlswede-Daykin inequality},
journal = {Discret. Math.},
volume = {152},
number = {1-3},
pages = {1--12},
year = {1996},
url = {https://doi.org/10.1016/0012-365X(94)00294-S},
doi = {10.1016/0012-365X(94)00294-S},
timestamp = {Fri, 12 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dm/AharoniK96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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