BibTeX records: Glenn Hickey

download as .bib file

@article{DBLP:journals/bioinformatics/EizengaNKVCHHCP21,
  author       = {Jordan M. Eizenga and
                  Adam M. Novak and
                  Emily Kobayashi and
                  Flavia Villani and
                  Cecilia Cisar and
                  Simon Heumos and
                  Glenn Hickey and
                  Vincenza Colonna and
                  Benedict Paten and
                  Erik Garrison},
  title        = {Efficient dynamic variation graphs},
  journal      = {Bioinform.},
  volume       = {36},
  number       = {21},
  pages        = {5139--5144},
  year         = {2021},
  url          = {https://doi.org/10.1093/bioinformatics/btaa640},
  doi          = {10.1093/BIOINFORMATICS/BTAA640},
  timestamp    = {Tue, 01 Jun 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/EizengaNKVCHHCP21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeyerNHCTPZ19,
  author       = {Wolfgang Beyer and
                  Adam M. Novak and
                  Glenn Hickey and
                  Jeffrey Chan and
                  Vanessa Tan and
                  Benedict Paten and
                  Daniel R. Zerbino},
  title        = {Sequence tube maps: making graph genomes intuitive to commuters},
  journal      = {Bioinform.},
  volume       = {35},
  number       = {24},
  pages        = {5318--5320},
  year         = {2019},
  url          = {https://doi.org/10.1093/bioinformatics/btz597},
  doi          = {10.1093/BIOINFORMATICS/BTZ597},
  timestamp    = {Fri, 14 May 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BeyerNHCTPZ19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/PatenERNGH18,
  author       = {Benedict Paten and
                  Jordan M. Eizenga and
                  Yohei M. Rosen and
                  Adam M. Novak and
                  Erik Garrison and
                  Glenn Hickey},
  title        = {Superbubbles, Ultrabubbles, and Cacti},
  journal      = {J. Comput. Biol.},
  volume       = {25},
  number       = {7},
  pages        = {649--663},
  year         = {2018},
  url          = {https://doi.org/10.1089/cmb.2017.0251},
  doi          = {10.1089/CMB.2017.0251},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcb/PatenERNGH18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/PatenNGH17,
  author       = {Benedict Paten and
                  Adam M. Novak and
                  Erik Garrison and
                  Glenn Hickey},
  editor       = {S{\"{u}}leyman Cenk Sahinalp},
  title        = {Superbubbles, Ultrabubbles and Cacti},
  booktitle    = {Research in Computational Molecular Biology - 21st Annual International
                  Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {10229},
  pages        = {173--189},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-56970-3\_11},
  doi          = {10.1007/978-3-319-56970-3\_11},
  timestamp    = {Sat, 30 May 2020 20:04:52 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/PatenNGH17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZerbinoBPHH16,
  author       = {Daniel R. Zerbino and
                  Tracy Ballinger and
                  Benedict Paten and
                  Glenn Hickey and
                  David Haussler},
  title        = {Representing and decomposing genomic structural variants as balanced
                  integer flows on sequence graphs},
  journal      = {{BMC} Bioinform.},
  volume       = {17},
  pages        = {400},
  year         = {2016},
  url          = {https://doi.org/10.1186/s12859-016-1258-4},
  doi          = {10.1186/S12859-016-1258-4},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/ZerbinoBPHH16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/NguyenHZREAKHP15,
  author       = {Ngan Nguyen and
                  Glenn Hickey and
                  Daniel R. Zerbino and
                  Brian J. Raney and
                  Dent Earl and
                  Joel Armstrong and
                  W. James Kent and
                  David Haussler and
                  Benedict Paten},
  title        = {Building a Pan-Genome Reference for a Population},
  journal      = {J. Comput. Biol.},
  volume       = {22},
  number       = {5},
  pages        = {387--401},
  year         = {2015},
  url          = {https://doi.org/10.1089/cmb.2014.0146},
  doi          = {10.1089/CMB.2014.0146},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/NguyenHZREAKHP15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RosenbloomABCCDDFGHHHHHHKLLLMNPRSSZHKK15,
  author       = {Kate R. Rosenbloom and
                  Joel Armstrong and
                  Galt P. Barber and
                  Jonathan Casper and
                  Hiram Clawson and
                  Mark Diekhans and
                  Timothy R. Dreszer and
                  Pauline A. Fujita and
                  Luvina Guruvadoo and
                  Maximilian Haeussler and
                  Rachel A. Harte and
                  Steven G. Heitner and
                  Glenn Hickey and
                  Angie S. Hinrichs and
                  Robert Hubley and
                  Donna Karolchik and
                  Katrina Learned and
                  Brian T. Lee and
                  Chin H. Li and
                  Karen H. Miga and
                  Ngan Nguyen and
                  Benedict Paten and
                  Brian J. Raney and
                  Arian F. A. Smit and
                  Matthew L. Speir and
                  Ann S. Zweig and
                  David Haussler and
                  Robert M. Kuhn and
                  W. James Kent},
  title        = {The {UCSC} Genome Browser database: 2015 update},
  journal      = {Nucleic Acids Res.},
  volume       = {43},
  number       = {Database-Issue},
  pages        = {670--681},
  year         = {2015},
  url          = {https://doi.org/10.1093/nar/gku1177},
  doi          = {10.1093/NAR/GKU1177},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/RosenbloomABCCDDFGHHHHHHKLLLMNPRSSZHKK15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NguyenHRACZKKHP14,
  author       = {Ngan Nguyen and
                  Glenn Hickey and
                  Brian J. Raney and
                  Joel Armstrong and
                  Hiram Clawson and
                  Ann S. Zweig and
                  Donna Karolchik and
                  William James Kent and
                  David Haussler and
                  Benedict Paten},
  title        = {Comparative assembly hubs: Web-accessible browsers for comparative
                  genomics},
  journal      = {Bioinform.},
  volume       = {30},
  number       = {23},
  pages        = {3293--3301},
  year         = {2014},
  url          = {https://doi.org/10.1093/bioinformatics/btu534},
  doi          = {10.1093/BIOINFORMATICS/BTU534},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/NguyenHRACZKKHP14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PatenZHH14,
  author       = {Benedict Paten and
                  Daniel R. Zerbino and
                  Glenn Hickey and
                  David Haussler},
  title        = {A unifying model of genome evolution under parsimony},
  journal      = {{BMC} Bioinform.},
  volume       = {15},
  pages        = {206},
  year         = {2014},
  url          = {https://doi.org/10.1186/1471-2105-15-206},
  doi          = {10.1186/1471-2105-15-206},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/PatenZHH14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NguyenHZREAHP14,
  author       = {Ngan Nguyen and
                  Glenn Hickey and
                  Daniel R. Zerbino and
                  Brian J. Raney and
                  Dent Earl and
                  Joel Armstrong and
                  David Haussler and
                  Benedict Paten},
  editor       = {Roded Sharan},
  title        = {Building a Pangenome Reference for a Population},
  booktitle    = {Research in Computational Molecular Biology - 18th Annual International
                  Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {8394},
  pages        = {207--221},
  publisher    = {Springer},
  year         = {2014},
  url          = {https://doi.org/10.1007/978-3-319-05269-4\_17},
  doi          = {10.1007/978-3-319-05269-4\_17},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/NguyenHZREAHP14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HickeyPEZH13,
  author       = {Glenn Hickey and
                  Benedict Paten and
                  Dent Earl and
                  Daniel R. Zerbino and
                  David Haussler},
  title        = {{HAL:} a hierarchical format for storing and analyzing multiple genome
                  alignments},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {10},
  pages        = {1341--1342},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt128},
  doi          = {10.1093/BIOINFORMATICS/BTT128},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HickeyPEZH13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HickeyB11,
  author       = {Glenn Hickey and
                  Mathieu Blanchette},
  title        = {A Probabilistic Model for Sequence Alignment with Context-Sensitive
                  Indels},
  journal      = {J. Comput. Biol.},
  volume       = {18},
  number       = {11},
  pages        = {1449--1464},
  year         = {2011},
  url          = {https://doi.org/10.1089/cmb.2011.0157},
  doi          = {10.1089/CMB.2011.0157},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/HickeyB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HickeyBCMZ11,
  author       = {Glenn Hickey and
                  Mathieu Blanchette and
                  Paz Carmi and
                  Anil Maheshwari and
                  Norbert Zeh},
  title        = {An Approximation Algorithm for the Noah's Ark Problem with Random
                  Feature Loss},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {8},
  number       = {2},
  pages        = {551--556},
  year         = {2011},
  url          = {https://doi.org/10.1109/TCBB.2010.37},
  doi          = {10.1109/TCBB.2010.37},
  timestamp    = {Mon, 03 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/HickeyBCMZ11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HickeyB11,
  author       = {Glenn Hickey and
                  Mathieu Blanchette},
  editor       = {Vineet Bafna and
                  S{\"{u}}leyman Cenk Sahinalp},
  title        = {A Probabilistic Model for Sequence Alignment with Context-Sensitive
                  Indels},
  booktitle    = {Research in Computational Molecular Biology - 15th Annual International
                  Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
                  Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {6577},
  pages        = {85--103},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-20036-6\_10},
  doi          = {10.1007/978-3-642-20036-6\_10},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/HickeyB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/paapp/DehneHRB10,
  author       = {Frank K. H. A. Dehne and
                  Glenn Hickey and
                  Andrew Rau{-}Chaplin and
                  Mark Byrne},
  title        = {Parallel catastrophe modelling on a Cell/BE},
  journal      = {Int. J. Parallel Emergent Distributed Syst.},
  volume       = {25},
  number       = {5},
  pages        = {401--410},
  year         = {2010},
  url          = {https://doi.org/10.1080/17445760903492086},
  doi          = {10.1080/17445760903492086},
  timestamp    = {Sun, 25 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/paapp/DehneHRB10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/HickeyB10,
  author       = {Glenn Hickey and
                  Mathieu Blanchette},
  editor       = {Russ B. Altman and
                  A. Keith Dunker and
                  Lawrence Hunter and
                  Tiffany Murray and
                  Teri E. Klein},
  title        = {A Practical Algorithm for Estimation of the Maximum Likelihood Ancestral
                  Reconstruction Error},
  booktitle    = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela,
                  Hawaii, USA, 4-8 January 2010},
  pages        = {31--42},
  publisher    = {World Scientific Publishing},
  year         = {2010},
  url          = {http://psb.stanford.edu/psb-online/proceedings/psb10/hickey.pdf},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/psb/HickeyB10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cascon/DehneHRB09,
  author       = {Frank K. H. A. Dehne and
                  Glenn Hickey and
                  Andrew Rau{-}Chaplin and
                  Mark Byrne},
  editor       = {Patrick Martin and
                  Anatol W. Kark and
                  Darlene A. Stewart},
  title        = {Parallel catastrophe modelling on a cell processor},
  booktitle    = {Proceedings of the 2009 conference of the Centre for Advanced Studies
                  on Collaborative Research, November 2-5, 2009, Toronto, Ontario, Canada},
  pages        = {24--31},
  publisher    = {{ACM}},
  year         = {2009},
  url          = {https://doi.org/10.1145/1723028.1723033},
  doi          = {10.1145/1723028.1723033},
  timestamp    = {Sun, 25 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cascon/DehneHRB09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/HickeyCMZ08,
  author       = {Glenn Hickey and
                  Paz Carmi and
                  Anil Maheshwari and
                  Norbert Zeh},
  editor       = {Keith A. Crandall and
                  Jens Lagergren},
  title        = {{NAPX:} {A} Polynomial Time Approximation Scheme for the Noah's Ark
                  Problem},
  booktitle    = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
                  Karlsruhe, Germany, September 15-19, 2008. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5251},
  pages        = {76--86},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-87361-7\_7},
  doi          = {10.1007/978-3-540-87361-7\_7},
  timestamp    = {Tue, 14 May 2019 10:00:40 +0200},
  biburl       = {https://dblp.org/rec/conf/wabi/HickeyCMZ08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-0805-1661,
  author       = {Glenn Hickey and
                  Paz Carmi and
                  Anil Maheshwari and
                  Norbert Zeh},
  title        = {{NAPX:} {A} Polynomial Time Approximation Scheme for the Noah's Ark
                  Problem},
  journal      = {CoRR},
  volume       = {abs/0805.1661},
  year         = {2008},
  url          = {http://arxiv.org/abs/0805.1661},
  eprinttype    = {arXiv},
  eprint       = {0805.1661},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-0805-1661.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ISCApdcs/BlouinBHR05,
  author       = {Christian Blouin and
                  Davin Butt and
                  Glenn Hickey and
                  Andrew Rau{-}Chaplin},
  editor       = {Michael J. Oudshoorn and
                  Sanguthevar Rajasekaran},
  title        = {Fast Parallel Maximum Likelihood-Based Protein Phylogeny},
  booktitle    = {Proceedings of the {ISCA} 18th International Conference on Parallel
                  and Distributed Computing Systems, September 12-14, 2005 Imperial
                  Palace Hotel, Las Vegas, Nevada, {USA}},
  pages        = {281--287},
  publisher    = {{ISCA}},
  year         = {2005},
  timestamp    = {Mon, 09 Aug 2021 16:35:39 +0200},
  biburl       = {https://dblp.org/rec/conf/ISCApdcs/BlouinBHR05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
a service of  Schloss Dagstuhl - Leibniz Center for Informatics