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BibTeX records: Glenn Hickey
@article{DBLP:journals/bioinformatics/EizengaNKVCHHCP21, author = {Jordan M. Eizenga and Adam M. Novak and Emily Kobayashi and Flavia Villani and Cecilia Cisar and Simon Heumos and Glenn Hickey and Vincenza Colonna and Benedict Paten and Erik Garrison}, title = {Efficient dynamic variation graphs}, journal = {Bioinform.}, volume = {36}, number = {21}, pages = {5139--5144}, year = {2021}, url = {https://doi.org/10.1093/bioinformatics/btaa640}, doi = {10.1093/BIOINFORMATICS/BTAA640}, timestamp = {Tue, 01 Jun 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/EizengaNKVCHHCP21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BeyerNHCTPZ19, author = {Wolfgang Beyer and Adam M. Novak and Glenn Hickey and Jeffrey Chan and Vanessa Tan and Benedict Paten and Daniel R. Zerbino}, title = {Sequence tube maps: making graph genomes intuitive to commuters}, journal = {Bioinform.}, volume = {35}, number = {24}, pages = {5318--5320}, year = {2019}, url = {https://doi.org/10.1093/bioinformatics/btz597}, doi = {10.1093/BIOINFORMATICS/BTZ597}, timestamp = {Fri, 14 May 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/BeyerNHCTPZ19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/PatenERNGH18, author = {Benedict Paten and Jordan M. Eizenga and Yohei M. Rosen and Adam M. Novak and Erik Garrison and Glenn Hickey}, title = {Superbubbles, Ultrabubbles, and Cacti}, journal = {J. Comput. Biol.}, volume = {25}, number = {7}, pages = {649--663}, year = {2018}, url = {https://doi.org/10.1089/cmb.2017.0251}, doi = {10.1089/CMB.2017.0251}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/PatenERNGH18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/PatenNGH17, author = {Benedict Paten and Adam M. Novak and Erik Garrison and Glenn Hickey}, editor = {S{\"{u}}leyman Cenk Sahinalp}, title = {Superbubbles, Ultrabubbles and Cacti}, booktitle = {Research in Computational Molecular Biology - 21st Annual International Conference, {RECOMB} 2017, Hong Kong, China, May 3-7, 2017, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {10229}, pages = {173--189}, year = {2017}, url = {https://doi.org/10.1007/978-3-319-56970-3\_11}, doi = {10.1007/978-3-319-56970-3\_11}, timestamp = {Sat, 30 May 2020 20:04:52 +0200}, biburl = {https://dblp.org/rec/conf/recomb/PatenNGH17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ZerbinoBPHH16, author = {Daniel R. Zerbino and Tracy Ballinger and Benedict Paten and Glenn Hickey and David Haussler}, title = {Representing and decomposing genomic structural variants as balanced integer flows on sequence graphs}, journal = {{BMC} Bioinform.}, volume = {17}, pages = {400}, year = {2016}, url = {https://doi.org/10.1186/s12859-016-1258-4}, doi = {10.1186/S12859-016-1258-4}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ZerbinoBPHH16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/NguyenHZREAKHP15, author = {Ngan Nguyen and Glenn Hickey and Daniel R. Zerbino and Brian J. Raney and Dent Earl and Joel Armstrong and W. James Kent and David Haussler and Benedict Paten}, title = {Building a Pan-Genome Reference for a Population}, journal = {J. Comput. Biol.}, volume = {22}, number = {5}, pages = {387--401}, year = {2015}, url = {https://doi.org/10.1089/cmb.2014.0146}, doi = {10.1089/CMB.2014.0146}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/NguyenHZREAKHP15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/RosenbloomABCCDDFGHHHHHHKLLLMNPRSSZHKK15, author = {Kate R. Rosenbloom and Joel Armstrong and Galt P. Barber and Jonathan Casper and Hiram Clawson and Mark Diekhans and Timothy R. Dreszer and Pauline A. Fujita and Luvina Guruvadoo and Maximilian Haeussler and Rachel A. Harte and Steven G. Heitner and Glenn Hickey and Angie S. Hinrichs and Robert Hubley and Donna Karolchik and Katrina Learned and Brian T. Lee and Chin H. Li and Karen H. Miga and Ngan Nguyen and Benedict Paten and Brian J. Raney and Arian F. A. Smit and Matthew L. Speir and Ann S. Zweig and David Haussler and Robert M. Kuhn and W. James Kent}, title = {The {UCSC} Genome Browser database: 2015 update}, journal = {Nucleic Acids Res.}, volume = {43}, number = {Database-Issue}, pages = {670--681}, year = {2015}, url = {https://doi.org/10.1093/nar/gku1177}, doi = {10.1093/NAR/GKU1177}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/RosenbloomABCCDDFGHHHHHHKLLLMNPRSSZHKK15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/NguyenHRACZKKHP14, author = {Ngan Nguyen and Glenn Hickey and Brian J. Raney and Joel Armstrong and Hiram Clawson and Ann S. Zweig and Donna Karolchik and William James Kent and David Haussler and Benedict Paten}, title = {Comparative assembly hubs: Web-accessible browsers for comparative genomics}, journal = {Bioinform.}, volume = {30}, number = {23}, pages = {3293--3301}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btu534}, doi = {10.1093/BIOINFORMATICS/BTU534}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/NguyenHRACZKKHP14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/PatenZHH14, author = {Benedict Paten and Daniel R. Zerbino and Glenn Hickey and David Haussler}, title = {A unifying model of genome evolution under parsimony}, journal = {{BMC} Bioinform.}, volume = {15}, pages = {206}, year = {2014}, url = {https://doi.org/10.1186/1471-2105-15-206}, doi = {10.1186/1471-2105-15-206}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/PatenZHH14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/NguyenHZREAHP14, author = {Ngan Nguyen and Glenn Hickey and Daniel R. Zerbino and Brian J. Raney and Dent Earl and Joel Armstrong and David Haussler and Benedict Paten}, editor = {Roded Sharan}, title = {Building a Pangenome Reference for a Population}, booktitle = {Research in Computational Molecular Biology - 18th Annual International Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings}, series = {Lecture Notes in Computer Science}, volume = {8394}, pages = {207--221}, publisher = {Springer}, year = {2014}, url = {https://doi.org/10.1007/978-3-319-05269-4\_17}, doi = {10.1007/978-3-319-05269-4\_17}, timestamp = {Mon, 13 May 2019 09:30:09 +0200}, biburl = {https://dblp.org/rec/conf/recomb/NguyenHZREAHP14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HickeyPEZH13, author = {Glenn Hickey and Benedict Paten and Dent Earl and Daniel R. Zerbino and David Haussler}, title = {{HAL:} a hierarchical format for storing and analyzing multiple genome alignments}, journal = {Bioinform.}, volume = {29}, number = {10}, pages = {1341--1342}, year = {2013}, url = {https://doi.org/10.1093/bioinformatics/btt128}, doi = {10.1093/BIOINFORMATICS/BTT128}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/HickeyPEZH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/HickeyB11, author = {Glenn Hickey and Mathieu Blanchette}, title = {A Probabilistic Model for Sequence Alignment with Context-Sensitive Indels}, journal = {J. Comput. Biol.}, volume = {18}, number = {11}, pages = {1449--1464}, year = {2011}, url = {https://doi.org/10.1089/cmb.2011.0157}, doi = {10.1089/CMB.2011.0157}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcb/HickeyB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/tcbb/HickeyBCMZ11, author = {Glenn Hickey and Mathieu Blanchette and Paz Carmi and Anil Maheshwari and Norbert Zeh}, title = {An Approximation Algorithm for the Noah's Ark Problem with Random Feature Loss}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {8}, number = {2}, pages = {551--556}, year = {2011}, url = {https://doi.org/10.1109/TCBB.2010.37}, doi = {10.1109/TCBB.2010.37}, timestamp = {Mon, 03 Apr 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/tcbb/HickeyBCMZ11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/HickeyB11, author = {Glenn Hickey and Mathieu Blanchette}, editor = {Vineet Bafna and S{\"{u}}leyman Cenk Sahinalp}, title = {A Probabilistic Model for Sequence Alignment with Context-Sensitive Indels}, booktitle = {Research in Computational Molecular Biology - 15th Annual International Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {6577}, pages = {85--103}, publisher = {Springer}, year = {2011}, url = {https://doi.org/10.1007/978-3-642-20036-6\_10}, doi = {10.1007/978-3-642-20036-6\_10}, timestamp = {Mon, 13 May 2019 09:30:09 +0200}, biburl = {https://dblp.org/rec/conf/recomb/HickeyB11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/paapp/DehneHRB10, author = {Frank K. H. A. Dehne and Glenn Hickey and Andrew Rau{-}Chaplin and Mark Byrne}, title = {Parallel catastrophe modelling on a Cell/BE}, journal = {Int. J. Parallel Emergent Distributed Syst.}, volume = {25}, number = {5}, pages = {401--410}, year = {2010}, url = {https://doi.org/10.1080/17445760903492086}, doi = {10.1080/17445760903492086}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/paapp/DehneHRB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/HickeyB10, author = {Glenn Hickey and Mathieu Blanchette}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {A Practical Algorithm for Estimation of the Maximum Likelihood Ancestral Reconstruction Error}, booktitle = {Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010}, pages = {31--42}, publisher = {World Scientific Publishing}, year = {2010}, url = {http://psb.stanford.edu/psb-online/proceedings/psb10/hickey.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/HickeyB10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cascon/DehneHRB09, author = {Frank K. H. A. Dehne and Glenn Hickey and Andrew Rau{-}Chaplin and Mark Byrne}, editor = {Patrick Martin and Anatol W. Kark and Darlene A. Stewart}, title = {Parallel catastrophe modelling on a cell processor}, booktitle = {Proceedings of the 2009 conference of the Centre for Advanced Studies on Collaborative Research, November 2-5, 2009, Toronto, Ontario, Canada}, pages = {24--31}, publisher = {{ACM}}, year = {2009}, url = {https://doi.org/10.1145/1723028.1723033}, doi = {10.1145/1723028.1723033}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cascon/DehneHRB09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/wabi/HickeyCMZ08, author = {Glenn Hickey and Paz Carmi and Anil Maheshwari and Norbert Zeh}, editor = {Keith A. Crandall and Jens Lagergren}, title = {{NAPX:} {A} Polynomial Time Approximation Scheme for the Noah's Ark Problem}, booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5251}, pages = {76--86}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-87361-7\_7}, doi = {10.1007/978-3-540-87361-7\_7}, timestamp = {Tue, 14 May 2019 10:00:40 +0200}, biburl = {https://dblp.org/rec/conf/wabi/HickeyCMZ08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-0805-1661, author = {Glenn Hickey and Paz Carmi and Anil Maheshwari and Norbert Zeh}, title = {{NAPX:} {A} Polynomial Time Approximation Scheme for the Noah's Ark Problem}, journal = {CoRR}, volume = {abs/0805.1661}, year = {2008}, url = {http://arxiv.org/abs/0805.1661}, eprinttype = {arXiv}, eprint = {0805.1661}, timestamp = {Mon, 13 Aug 2018 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-0805-1661.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ISCApdcs/BlouinBHR05, author = {Christian Blouin and Davin Butt and Glenn Hickey and Andrew Rau{-}Chaplin}, editor = {Michael J. Oudshoorn and Sanguthevar Rajasekaran}, title = {Fast Parallel Maximum Likelihood-Based Protein Phylogeny}, booktitle = {Proceedings of the {ISCA} 18th International Conference on Parallel and Distributed Computing Systems, September 12-14, 2005 Imperial Palace Hotel, Las Vegas, Nevada, {USA}}, pages = {281--287}, publisher = {{ISCA}}, year = {2005}, timestamp = {Mon, 09 Aug 2021 16:35:39 +0200}, biburl = {https://dblp.org/rec/conf/ISCApdcs/BlouinBHR05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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