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ORCIDBibTeX records: Thomas Fox
@article{DBLP:journals/jcheminf/OchoaBF23,
author = {Rodrigo Ochoa and
J. B. Brown and
Thomas Fox},
title = {pyPept: a python library to generate atomistic 2D and 3D representations
of peptides},
journal = {J. Cheminformatics},
volume = {15},
number = {1},
pages = {79},
year = {2023},
url = {https://doi.org/10.1186/s13321-023-00748-2},
doi = {10.1186/S13321-023-00748-2},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcheminf/OchoaBF23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/OchoaCF22,
author = {Rodrigo Ochoa and
Pilar Cossio and
Thomas Fox},
title = {Protocol for iterative optimization of modified peptides bound to
protein targets},
journal = {J. Comput. Aided Mol. Des.},
volume = {36},
number = {11},
pages = {825--835},
year = {2022},
url = {https://doi.org/10.1007/s10822-022-00482-1},
doi = {10.1007/S10822-022-00482-1},
timestamp = {Fri, 11 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcamd/OchoaCF22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/FoxBHOPW22,
author = {Thomas Fox and
Michael Bieler and
Peter Haebel and
Rodrigo Ochoa and
Stefan Peters and
Alexander Weber},
title = {{BILN:} {A} Human-Readable Line Notation for Complex Peptides},
journal = {J. Chem. Inf. Model.},
volume = {62},
number = {17},
pages = {3942--3947},
year = {2022},
url = {https://doi.org/10.1021/acs.jcim.2c00703},
doi = {10.1021/ACS.JCIM.2C00703},
timestamp = {Wed, 22 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/FoxBHOPW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/DamoreHDHACFGLL22,
author = {Lorenzo D'amore and
David F. Hahn and
David L. Dotson and
Joshua T. Horton and
Jamshed Anwar and
Ian Craig and
Thomas Fox and
Alberto Gobbi and
Sirish Kaushik Lakkaraju and
Xavier Lucas and
Katharina Meier and
David L. Mobley and
Arjun Narayanan and
Christina E. M. Schindler and
William C. Swope and
Pieter J. in 't Veld and
Jeffrey Wagner and
Bai Xue and
Gary Tresadern},
title = {Collaborative Assessment of Molecular Geometries and Energies from
the Open Force Field},
journal = {J. Chem. Inf. Model.},
volume = {62},
number = {23},
pages = {6094--6104},
year = {2022},
url = {https://doi.org/10.1021/acs.jcim.2c01185},
doi = {10.1021/ACS.JCIM.2C01185},
timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/DamoreHDHACFGLL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jssc/ChakrabortyFTRY22,
author = {Sudipto Chakraborty and
David J. Frank and
Kevin Tien and
Pat Rosno and
Mark Yeck and
Joseph A. Glick and
Raphael Robertazzi and
Ray Richetta and
John F. Bulzacchelli and
Devin Underwood and
Daniel Ramirez and
Dereje Yilma and
Andrew Davies and
Rajiv V. Joshi and
Shawn D. Chambers and
Scott Lekuch and
Ken Inoue and
Dorothy Wisnieff and
Christian W. Baks and
Donald S. Bethune and
John Timmerwilke and
Thomas Fox and
Peilin Song and
Blake R. Johnson and
Brian P. Gaucher and
Daniel J. Friedman},
title = {A Cryo-CMOS Low-Power Semi-Autonomous Transmon Qubit State Controller
in 14-nm FinFET Technology},
journal = {{IEEE} J. Solid State Circuits},
volume = {57},
number = {11},
pages = {3258--3273},
year = {2022},
url = {https://doi.org/10.1109/JSSC.2022.3201775},
doi = {10.1109/JSSC.2022.3201775},
timestamp = {Sun, 13 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jssc/ChakrabortyFTRY22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/date/TienILFCRFYGRRB22,
author = {Kevin Tien and
Ken Inoue and
Scott Lekuch and
David J. Frank and
Sudipto Chakraborty and
Pat Rosno and
Thomas Fox and
Mark Yeck and
Joseph A. Glick and
Raphael Robertazzi and
Ray Richetta and
John F. Bulzacchelli and
Daniel Ramirez and
Dereje Yilma and
Andrew Davies and
Rajiv V. Joshi and
Devin Underwood and
Dorothy Wisnieff and
Christian W. Baks and
Donald Bethune and
John Timmerwilke and
Blake R. Johnson and
Brian P. Gaucher and
Daniel J. Friedman},
editor = {Cristiana Bolchini and
Ingrid Verbauwhede and
Ioana Vatajelu},
title = {A Cryo-CMOS Transmon Qubit Controller and Verification with {FPGA}
Emulation},
booktitle = {2022 Design, Automation {\&} Test in Europe Conference {\&}
Exhibition, {DATE} 2022, Antwerp, Belgium, March 14-23, 2022},
pages = {13--16},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.23919/DATE54114.2022.9774702},
doi = {10.23919/DATE54114.2022.9774702},
timestamp = {Wed, 25 May 2022 22:56:19 +0200},
biburl = {https://dblp.org/rec/conf/date/TienILFCRFYGRRB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isscc/FrankCTRFYGRRBR22,
author = {David J. Frank and
Sudipto Chakraborty and
Kevin Tien and
Pat Rosno and
Thomas Fox and
Mark Yeck and
Joseph A. Glick and
Raphael Robertazzi and
Ray Richetta and
John F. Bulzacchelli and
Daniel Ramirez and
Dereje Yilma and
Andrew Davies and
Rajiv V. Joshi and
Shawn D. Chambers and
Scott Lekuch and
Ken Inoue and
Devin Underwood and
Dorothy Wisnieff and
Christian W. Baks and
Donald Bethune and
John Timmerwilke and
Blake R. Johnson and
Brian P. Gaucher and
Daniel J. Friedman},
title = {A Cryo-CMOS Low-Power Semi-Autonomous Qubit State Controller in 14nm
FinFET Technology},
booktitle = {{IEEE} International Solid-State Circuits Conference, {ISSCC} 2022,
San Francisco, CA, USA, February 20-26, 2022},
pages = {360--362},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/ISSCC42614.2022.9731538},
doi = {10.1109/ISSCC42614.2022.9731538},
timestamp = {Mon, 21 Mar 2022 13:32:47 +0100},
biburl = {https://dblp.org/rec/conf/isscc/FrankCTRFYGRRBR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/IsikBFRCM20,
author = {Mehtap Isik and
Teresa Danielle Bergazin and
Thomas Fox and
Andrea Rizzi and
John D. Chodera and
David L. Mobley},
title = {Assessing the accuracy of octanol-water partition coefficient predictions
in the {SAMPL6} Part {II} log {P} Challenge},
journal = {J. Comput. Aided Mol. Des.},
volume = {34},
number = {4},
pages = {335--370},
year = {2020},
url = {https://doi.org/10.1007/s10822-020-00295-0},
doi = {10.1007/S10822-020-00295-0},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcamd/IsikBFRCM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/KamenikLFFL18,
author = {Anna S. Kamenik and
Uta F. Lessel and
Julian E. Fuchs and
Thomas Fox and
Klaus R. Liedl},
title = {Peptidic Macrocycles - Conformational Sampling and Thermodynamic Characterization},
journal = {J. Chem. Inf. Model.},
volume = {58},
number = {5},
pages = {982--992},
year = {2018},
url = {https://doi.org/10.1021/acs.jcim.8b00097},
doi = {10.1021/ACS.JCIM.8B00097},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/KamenikLFFL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/ChristF14,
author = {Clara D. Christ and
Thomas Fox},
title = {Accuracy Assessment and Automation of Free Energy Calculations for
Drug Design},
journal = {J. Chem. Inf. Model.},
volume = {54},
number = {1},
pages = {108--120},
year = {2014},
url = {https://doi.org/10.1021/ci4004199},
doi = {10.1021/CI4004199},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/ChristF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/HuberMFGTLF14,
author = {Roland G. Huber and
Michael A. Margreiter and
Julian E. Fuchs and
Susanne von Grafenstein and
Christofer S. Tautermann and
Klaus R. Liedl and
Thomas Fox},
title = {Heteroaromatic {\(\pi\)}-Stacking Energy Landscapes},
journal = {J. Chem. Inf. Model.},
volume = {54},
number = {5},
pages = {1371--1379},
year = {2014},
url = {https://doi.org/10.1021/ci500183u},
doi = {10.1021/CI500183U},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/HuberMFGTLF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/informatiktage/MollBFW14,
author = {Nikolaus Moll and
Christian Baranowski and
Thomas Fox and
J{\"{u}}rgen W{\"{a}}sch},
title = {Modellierung und Generierung von Testdaten f{\"{u}}r Datenbank-basierte
Anwendungen},
booktitle = {Informatiktage 2014: Big (Data) is beautiful - Fachwissenschaftlicher
Informatik-Kongress, 27. und 28. M{\"{a}}rz 2014, Hasso-Plattner-Institut
der Universit{\"{a}}t Potsdam},
series = {{LNI}},
volume = {{S-13}},
pages = {151--154},
publisher = {{GI}},
year = {2014},
timestamp = {Fri, 17 Dec 2021 12:38:08 +0100},
biburl = {https://dblp.org/rec/conf/informatiktage/MollBFW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/KerdawyTCF13,
author = {Ahmed M. El Kerdawy and
Christofer S. Tautermann and
Timothy Clark and
Thomas Fox},
title = {Economical and Accurate Protocol for Calculating Hydrogen-Bond-Acceptor
Strengths},
journal = {J. Chem. Inf. Model.},
volume = {53},
number = {12},
pages = {3262--3272},
year = {2013},
url = {https://doi.org/10.1021/ci4006222},
doi = {10.1021/CI4006222},
timestamp = {Tue, 04 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/KerdawyTCF13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/WallnoeferLF11,
author = {Hannes G. Wallnoefer and
Klaus R. Liedl and
Thomas Fox},
title = {A challenging system: Free energy prediction for factor Xa},
journal = {J. Comput. Chem.},
volume = {32},
number = {8},
pages = {1743--1752},
year = {2011},
url = {https://doi.org/10.1002/jcc.21758},
doi = {10.1002/JCC.21758},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcc/WallnoeferLF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/WallnoeferLF11,
author = {Hannes G. Wallnoefer and
Klaus R. Liedl and
Thomas Fox},
title = {A GRID-Derived Water Network Stabilizes Molecular Dynamics Computer
Simulations of a Protease},
journal = {J. Chem. Inf. Model.},
volume = {51},
number = {11},
pages = {2860--2867},
year = {2011},
url = {https://doi.org/10.1021/ci200138u},
doi = {10.1021/CI200138U},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/WallnoeferLF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/HansenRSRFKM09,
author = {Katja Hansen and
Fabian Rathke and
Timon Schroeter and
Georg Rast and
Thomas Fox and
Jan M. Kriegl and
Sebastian Mika},
title = {Bias-Correction of Regression Models: {A} Case Study on hERG Inhibition},
journal = {J. Chem. Inf. Model.},
volume = {49},
number = {6},
pages = {1486--1496},
year = {2009},
url = {https://doi.org/10.1021/ci9000794},
doi = {10.1021/CI9000794},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/HansenRSRFKM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/KrieglABF05,
author = {Jan M. Kriegl and
Thomas Arnhold and
Bernd Beck and
Thomas Fox},
title = {A support vector machine approach to classify human cytochrome {P450}
3A4 inhibitors},
journal = {J. Comput. Aided Mol. Des.},
volume = {19},
number = {3},
pages = {189--201},
year = {2005},
url = {https://doi.org/10.1007/s10822-005-3785-3},
doi = {10.1007/S10822-005-3785-3},
timestamp = {Thu, 16 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcamd/KrieglABF05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/FoxH00,
author = {Thomas Fox and
Eric E. J. Haaksma},
title = {Computer based screening of compound databases: 1. Preselection of
benzamidine-based thrombin inhibitors},
journal = {J. Comput. Aided Mol. Des.},
volume = {14},
number = {5},
pages = {411--425},
year = {2000},
url = {https://doi.org/10.1023/A:1008167012101},
doi = {10.1023/A:1008167012101},
timestamp = {Thu, 16 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcamd/FoxH00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/FoxRZ93,
author = {Thomas Fox and
Notker R{\"{o}}sch and
Randy J. Zauhar},
title = {Electrostatic solvent effects on the electronic structure of ground
and excited states of molecules: Applications of a cavity model based
upon a finite element method},
journal = {J. Comput. Chem.},
volume = {14},
number = {3},
pages = {253--262},
year = {1993},
url = {https://doi.org/10.1002/jcc.540140302},
doi = {10.1002/JCC.540140302},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcc/FoxRZ93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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