BibTeX records: Liliana Florea

Name: dblp XML data dump
Creator: Schloss Dagstuhl - Leibniz Center for Informatics
Published: 1993
License: https://creativecommons.org/publicdomain/zero/1.0/
Keywords: dblp, XML, computer science, scholarly publications, metadata

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@article{DBLP:journals/bioinformatics/YangCHF21,
  author       = {Guangyu Yang and
                  Leslie Cope and
                  Zitong He and
                  Liliana Florea},
  title        = {Jutils: a visualization toolkit for differential alternative splicing
                  events},
  journal      = {Bioinform.},
  volume       = {37},
  number       = {22},
  pages        = {4272--4274},
  year         = {2021},
  url          = {https://doi.org/10.1093/bioinformatics/btab401},
  doi          = {10.1093/BIOINFORMATICS/BTAB401},
  timestamp    = {Tue, 12 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YangCHF21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/AfsariGCFKSKFZH18,
  author       = {Bahman Afsari and
                  Theresa Guo and
                  Michael Considine and
                  Liliana Florea and
                  Luciane T. Kagohara and
                  Genevieve L. Stein{-}O'Brien and
                  Dylan Kelley and
                  Emily Flam and
                  Kristina D. Zambo and
                  Patrick K. Ha and
                  Donald Geman and
                  Michael F. Ochs and
                  Joseph A. Califano and
                  Daria A. Gaykalova and
                  Alexander V. Favorov and
                  Elana J. Fertig},
  title        = {Splice Expression Variation Analysis {(SEVA)} for inter-tumor heterogeneity
                  of gene isoform usage in cancer},
  journal      = {Bioinform.},
  volume       = {34},
  number       = {11},
  pages        = {1859--1867},
  year         = {2018},
  url          = {https://doi.org/10.1093/bioinformatics/bty004},
  doi          = {10.1093/BIOINFORMATICS/BTY004},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AfsariGCFKSKFZH18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/iccabs/YangF16,
  author       = {Guangyu Yang and
                  Liliana Florea},
  title        = {JULiP: An efficient model for accurate intron selection from multiple
                  RNA-seq samples},
  booktitle    = {6th {IEEE} International Conference on Computational Advances in Bio
                  and Medical Sciences, {ICCABS} 2016, Atlanta, GA, USA, October 13-15,
                  2016},
  pages        = {1--6},
  publisher    = {{IEEE} Computer Society},
  year         = {2016},
  url          = {https://doi.org/10.1109/ICCABS.2016.7802769},
  doi          = {10.1109/ICCABS.2016.7802769},
  timestamp    = {Thu, 23 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/iccabs/YangF16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/iccabs/YangF16a,
  author       = {Guangyu Yang and
                  Liliana Florea},
  title        = {JULiP: An efficient model for accurate intron selection from multiple
                  RNA-seq samples},
  booktitle    = {6th {IEEE} International Conference on Computational Advances in Bio
                  and Medical Sciences, {ICCABS} 2016, Atlanta, GA, USA, October 13-15,
                  2016},
  pages        = {1},
  publisher    = {{IEEE} Computer Society},
  year         = {2016},
  url          = {https://doi.org/10.1109/ICCABS.2016.7802790},
  doi          = {10.1109/ICCABS.2016.7802790},
  timestamp    = {Thu, 23 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/iccabs/YangF16a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/SongF13,
  author       = {Li Song and
                  Liliana Florea},
  title        = {{CLASS:} constrained transcript assembly of RNA-seq reads},
  journal      = {{BMC} Bioinform.},
  volume       = {14},
  number       = {{S-5}},
  pages        = {S14},
  year         = {2013},
  url          = {https://doi.org/10.1186/1471-2105-14-S5-S14},
  doi          = {10.1186/1471-2105-14-S5-S14},
  timestamp    = {Sun, 04 Aug 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/SongF13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/tcbb/FloreaS13,
  author       = {Liliana Florea and
                  Steven L. Salzberg},
  title        = {Genome-Guided Transcriptome Assembly in the Age of Next-Generation
                  Sequencing},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {10},
  number       = {5},
  pages        = {1234--1240},
  year         = {2013},
  url          = {https://doi.org/10.1109/TCBB.2013.140},
  doi          = {10.1109/TCBB.2013.140},
  timestamp    = {Mon, 03 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/FloreaS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/f1000research/FloreaSS13,
  author       = {Liliana Florea and
                  Li Song and
                  Steven L. Salzberg},
  title        = {Thousands of exon skipping events differentiate among splicing patterns
                  in sixteen human tissues},
  journal      = {F1000Research},
  volume       = {2},
  pages        = {188},
  year         = {2013},
  url          = {https://doi.org/10.12688/f1000research.2-188.v1},
  doi          = {10.12688/F1000RESEARCH.2-188.V1},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/f1000research/FloreaSS13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/WalenzF11,
  author       = {Brian Walenz and
                  Liliana Florea},
  title        = {Sim4db and Leaff: utilities for fast batch spliced alignment and sequence
                  indexing},
  journal      = {Bioinform.},
  volume       = {27},
  number       = {13},
  pages        = {1869--1870},
  year         = {2011},
  url          = {https://doi.org/10.1093/bioinformatics/btr285},
  doi          = {10.1093/BIOINFORMATICS/BTR285},
  timestamp    = {Tue, 08 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WalenzF11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/cominfsys/FloreaMZ10,
  author       = {Liliana Florea and
                  Ingrid Mihai and
                  Leming Zhou},
  title        = {Spaced Seeds for Cross-species CDNA-to-genome Sequence Alignment},
  journal      = {Commun. Inf. Syst.},
  volume       = {10},
  number       = {2},
  pages        = {115--136},
  year         = {2010},
  url          = {https://doi.org/10.4310/cis.2010.v10.n2.a4},
  doi          = {10.4310/CIS.2010.V10.N2.A4},
  timestamp    = {Wed, 16 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cominfsys/FloreaMZ10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/ZhouMF08,
  author       = {Leming Zhou and
                  Ingrid Mihai and
                  Liliana Florea},
  title        = {Effective cluster-based seed design for cross-species sequence comparisons},
  journal      = {Bioinform.},
  volume       = {24},
  number       = {24},
  pages        = {2926--2927},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn547},
  doi          = {10.1093/BIOINFORMATICS/BTN547},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ZhouMF08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/ZhouSF08,
  author       = {Leming Zhou and
                  Jonathan Stanton and
                  Liliana Florea},
  title        = {Universal seeds for cDNA-to-genome comparison},
  journal      = {{BMC} Bioinform.},
  volume       = {9},
  year         = {2008},
  url          = {https://doi.org/10.1186/1471-2105-9-36},
  doi          = {10.1186/1471-2105-9-36},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/ZhouSF08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcb/ZhouF07,
  author       = {Leming Zhou and
                  Liliana Florea},
  title        = {Designing Sensitive and Specific Spaced Seeds for Cross-Species mRNA-to-Genome
                  Alignment},
  journal      = {J. Comput. Biol.},
  volume       = {14},
  number       = {2},
  pages        = {113--130},
  year         = {2007},
  url          = {https://doi.org/10.1089/cmb.2006.0130},
  doi          = {10.1089/CMB.2006.0130},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcb/ZhouF07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bib/Florea06,
  author       = {Liliana Florea},
  title        = {Bioinformatics of alternative splicing and its regulation},
  journal      = {Briefings Bioinform.},
  volume       = {7},
  number       = {1},
  pages        = {55--69},
  year         = {2006},
  url          = {https://doi.org/10.1093/bib/bbk005},
  doi          = {10.1093/BIB/BBK005},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/Florea06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcb/LippertZFMI05,
  author       = {Ross A. Lippert and
                  Xiaoyue Zhao and
                  Liliana Florea and
                  Clark M. Mobarry and
                  Sorin Istrail},
  title        = {Finding Anchors for Genomic Sequence Comparison},
  journal      = {J. Comput. Biol.},
  volume       = {12},
  number       = {6},
  pages        = {762--776},
  year         = {2005},
  url          = {https://doi.org/10.1089/cmb.2005.12.762},
  doi          = {10.1089/CMB.2005.12.762},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/LippertZFMI05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/recomb/LippertZFMI04,
  author       = {Ross Lippert and
                  Xiaoyue Zhao and
                  Liliana Florea and
                  Clark M. Mobarry and
                  Sorin Istrail},
  editor       = {Philip E. Bourne and
                  Dan Gusfield},
  title        = {Finding anchors for genomic sequence comparison},
  booktitle    = {Proceedings of the Eighth Annual International Conference on Computational
                  Molecular Biology, 2004, San Diego, California, USA, March 27-31,
                  2004},
  pages        = {233--241},
  publisher    = {{ACM}},
  year         = {2004},
  url          = {https://doi.org/10.1145/974614.974645},
  doi          = {10.1145/974614.974645},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/LippertZFMI04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/FloreaMRSM03,
  author       = {Liliana Florea and
                  Michael McClelland and
                  Cathy Riemer and
                  Scott Schwartz and
                  Webb Miller},
  title        = {EnteriX 2003: visualization tools for genome alignments of Enterobacteriaceae},
  journal      = {Nucleic Acids Res.},
  volume       = {31},
  number       = {13},
  pages        = {3527--3532},
  year         = {2003},
  url          = {https://doi.org/10.1093/nar/gkg551},
  doi          = {10.1093/NAR/GKG551},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/FloreaMRSM03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/csb/FloreaHKSHI03,
  author       = {Liliana Florea and
                  Bjarni V. Halld{\'{o}}rsson and
                  Oliver Kohlbacher and
                  Russell Schwartz and
                  Stephen Hoffman and
                  Sorin Istrail},
  title        = {Epitope Prediction Algorithms for Peptide based Vaccine Design},
  booktitle    = {2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003,
                  Stanford, CA, USA, August 11-14, 2003},
  pages        = {17--26},
  publisher    = {{IEEE} Computer Society},
  year         = {2003},
  url          = {https://doi.org/10.1109/CSB.2003.1227293},
  doi          = {10.1109/CSB.2003.1227293},
  timestamp    = {Thu, 23 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/csb/FloreaHKSHI03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

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