BibTeX records: Laurent Falquet

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@article{DBLP:journals/bmcbi/AkarsuAF19,
  author       = {Hatice Akarsu and
                  Lisandra Aguilar{-}Bultet and
                  Laurent Falquet},
  title        = {deltaRpkm: an {R} package for a rapid detection of differential gene
                  presence between related bacterial genomes},
  journal      = {{BMC} Bioinform.},
  volume       = {20},
  number       = {1},
  pages        = {621},
  year         = {2019},
  url          = {https://doi.org/10.1186/s12859-019-3234-2},
  doi          = {10.1186/S12859-019-3234-2},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/AkarsuAF19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/AkarsuBMBGF19,
  author       = {Hatice Akarsu and
                  Patricia Bordes and
                  Moise Mansour and
                  Donna{-}Joe Bigot and
                  Pierre Genevaux and
                  Laurent Falquet},
  title        = {TASmania: {A} bacterial Toxin-Antitoxin Systems database},
  journal      = {PLoS Comput. Biol.},
  volume       = {15},
  number       = {4},
  year         = {2019},
  url          = {https://doi.org/10.1371/journal.pcbi.1006946},
  doi          = {10.1371/JOURNAL.PCBI.1006946},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ploscb/AkarsuBMBGF19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Riba-GrognuzKFXW11,
  author       = {Oksana Riba{-}Grognuz and
                  Laurent Keller and
                  Laurent Falquet and
                  Ioannis Xenarios and
                  Yannick Wurm},
  title        = {Visualization and quality assessment of \emph{de novo} genome assemblies},
  journal      = {Bioinform.},
  volume       = {27},
  number       = {24},
  pages        = {3425--3426},
  year         = {2011},
  url          = {https://doi.org/10.1093/bioinformatics/btr569},
  doi          = {10.1093/BIOINFORMATICS/BTR569},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Riba-GrognuzKFXW11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Calderon-CopeteWWSFQF09,
  author       = {Sandra P. Calderon{-}Copete and
                  George Wigger and
                  Christof Wunderlin and
                  Tobias Schmidheini and
                  Joachim Frey and
                  Michael A. Quail and
                  Laurent Falquet},
  title        = {The \emph{Mycoplasma conjunctivae }genome sequencing, annotation and
                  analysis},
  journal      = {{BMC} Bioinform.},
  volume       = {10},
  number       = {{S-6}},
  year         = {2009},
  url          = {https://doi.org/10.1186/1471-2105-10-S6-S7},
  doi          = {10.1186/1471-2105-10-S6-S7},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/Calderon-CopeteWWSFQF09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KouaCFSTHD09,
  author       = {Dominique Koua and
                  Lorenzo Cerutti and
                  Laurent Falquet and
                  Christian J. A. Sigrist and
                  Gr{\'{e}}gory Theiler and
                  Nicolas Hulo and
                  Christophe Dunand},
  title        = {PeroxiBase: a database with new tools for peroxidase family classification},
  journal      = {Nucleic Acids Res.},
  volume       = {37},
  number       = {Database-Issue},
  pages        = {261--266},
  year         = {2009},
  url          = {https://doi.org/10.1093/nar/gkn680},
  doi          = {10.1093/NAR/GKN680},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/KouaCFSTHD09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/StockingerACCCFFFHKLLLPPPPR08,
  author       = {Heinz Stockinger and
                  Teresa K. Attwood and
                  Shahid Nadeem Chohan and
                  Richard G. C{\^{o}}t{\'{e}} and
                  Philippe Cudr{\'{e}}{-}Mauroux and
                  Laurent Falquet and
                  Pedro L. Fernandes and
                  Robert D. Finn and
                  Taavi Hupponen and
                  Eija Korpelainen and
                  Alberto Labarga and
                  Aur{\'{e}}lie Laugraud and
                  Tania Lima and
                  Evangelos Pafilis and
                  Marco Pagni and
                  Steve Pettifer and
                  Isabelle Phan and
                  Nazim Rahman},
  title        = {Experience using web services for biological sequence analysis},
  journal      = {Briefings Bioinform.},
  volume       = {9},
  number       = {6},
  pages        = {493--505},
  year         = {2008},
  url          = {https://doi.org/10.1093/bib/bbn029},
  doi          = {10.1093/BIB/BBN029},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/StockingerACCCFFFHKLLLPPPPR08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PagniICZJHMKF07,
  author       = {Marco Pagni and
                  Vassilios Ioannidis and
                  Lorenzo Cerutti and
                  Monique Zahn{-}Zabal and
                  C. Victor Jongeneel and
                  J{\"{o}}rg Hau and
                  Olivier Martin and
                  Dmitri Kuznetsov and
                  Laurent Falquet},
  title        = {MyHits: improvements to an interactive resource for analyzing protein
                  sequences},
  journal      = {Nucleic Acids Res.},
  volume       = {35},
  number       = {Web-Server-Issue},
  pages        = {433--437},
  year         = {2007},
  url          = {https://doi.org/10.1093/nar/gkm352},
  doi          = {10.1093/NAR/GKM352},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/PagniICZJHMKF07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/MatuteBF06,
  author       = {Daniel R. Matute and
                  Emiliano Barreto{-}Hernandez and
                  Laurent Falquet},
  title        = {Hunting for Insect-Specific Protein Domains},
  journal      = {Silico Biol.},
  volume       = {6},
  number       = {1-2},
  pages        = {35--42},
  year         = {2006},
  url          = {http://content.iospress.com/articles/in-silico-biology/isb00219},
  timestamp    = {Thu, 20 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/isb/MatuteBF06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eScience/StockingerPCF06,
  author       = {Heinz Stockinger and
                  Marco Pagni and
                  Lorenzo Cerutti and
                  Laurent Falquet},
  title        = {Grid Approach to Embarrassingly Parallel CPU-Intensive Bioinformatics
                  Problems},
  booktitle    = {Second International Conference on e-Science and Grid Technologies
                  (e-Science 2006), 4-6 December 2006, Amsterdam, The Netherlands},
  pages        = {58},
  publisher    = {{IEEE} Computer Society},
  year         = {2006},
  url          = {https://doi.org/10.1109/E-SCIENCE.2006.261142},
  doi          = {10.1109/E-SCIENCE.2006.261142},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/eScience/StockingerPCF06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PagniICZJF04,
  author       = {Marco Pagni and
                  Vassilios Ioannidis and
                  Lorenzo Cerutti and
                  Monique Zahn{-}Zabal and
                  C. Victor Jongeneel and
                  Laurent Falquet},
  title        = {MyHits: a new interactive resource for protein annotation and domain
                  identification},
  journal      = {Nucleic Acids Res.},
  volume       = {32},
  number       = {Web-Server-Issue},
  pages        = {332--335},
  year         = {2004},
  url          = {https://doi.org/10.1093/nar/gkh479},
  doi          = {10.1093/NAR/GKH479},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/PagniICZJF04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MulderAABBBBBBBBCCDDFFGHHHKKKLLLSOPPPSSSVZ03,
  author       = {Nicola J. Mulder and
                  Rolf Apweiler and
                  Terri K. Attwood and
                  Amos Bairoch and
                  Daniel Barrell and
                  Alex Bateman and
                  David Binns and
                  Margaret Biswas and
                  Paul Bradley and
                  Peer Bork and
                  Philipp Bucher and
                  Richard R. Copley and
                  Emmanuel Courcelle and
                  Ujjwal Das and
                  Richard Durbin and
                  Laurent Falquet and
                  Wolfgang Fleischmann and
                  Sam Griffiths{-}Jones and
                  Daniel H. Haft and
                  Nicola Harte and
                  Nicolas Hulo and
                  Daniel Kahn and
                  Alexander Kanapin and
                  Maria Krestyaninova and
                  Rodrigo Lopez and
                  Ivica Letunic and
                  David Lonsdale and
                  Ville Silventoinen and
                  Sandra E. Orchard and
                  Marco Pagni and
                  David Peyruc and
                  Chris P. Ponting and
                  Jeremy D. Selengut and
                  Florence Servant and
                  Christian J. A. Sigrist and
                  Robert Vaughan and
                  Evgeni M. Zdobnov},
  title        = {The InterPro Database, 2003 brings increased coverage and new features},
  journal      = {Nucleic Acids Res.},
  volume       = {31},
  number       = {1},
  pages        = {315--318},
  year         = {2003},
  url          = {https://doi.org/10.1093/nar/gkg046},
  doi          = {10.1093/NAR/GKG046},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/MulderAABBBBBBBBCCDDFFGHHHKKKLLLSOPPPSSSVZ03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FalquetBIPJ03,
  author       = {Laurent Falquet and
                  Lorenza Bordoli and
                  Vassilios Ioannidis and
                  Marco Pagni and
                  C. Victor Jongeneel},
  title        = {Swiss EMBnet node web server},
  journal      = {Nucleic Acids Res.},
  volume       = {31},
  number       = {13},
  pages        = {3782--3783},
  year         = {2003},
  url          = {https://doi.org/10.1093/nar/gkg547},
  doi          = {10.1093/NAR/GKG547},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/FalquetBIPJ03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MulderAABBBBBBBCCDFFGGHHHKKKLLOPPPSS02,
  author       = {Nicola J. Mulder and
                  Rolf Apweiler and
                  Terri K. Attwood and
                  Amos Bairoch and
                  Alex Bateman and
                  David Binns and
                  Margaret Biswas and
                  Paul Bradley and
                  Peer Bork and
                  Philipp Bucher and
                  Richard R. Copley and
                  Emmanuel Courcelle and
                  Richard Durbin and
                  Laurent Falquet and
                  Wolfgang Fleischmann and
                  J{\'{e}}r{\^{o}}me Gouzy and
                  Sam Griffiths{-}Jones and
                  Daniel H. Haft and
                  Henning Hermjakob and
                  Nicolas Hulo and
                  Daniel Kahn and
                  Alexander Kanapin and
                  Maria Krestyaninova and
                  Rodrigo Lopez and
                  Ivica Letunic and
                  Sue Orchard and
                  Marco Pagni and
                  David Peyruc and
                  Chris P. Ponting and
                  Florence Servant and
                  Christian J. A. Sigrist},
  title        = {InterPro: An Integrated Documentation Resource for Protein Families,
                  Domains and Functional Sites},
  journal      = {Briefings Bioinform.},
  volume       = {3},
  number       = {3},
  pages        = {225--235},
  year         = {2002},
  url          = {https://doi.org/10.1093/bib/3.3.225},
  doi          = {10.1093/BIB/3.3.225},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/MulderAABBBBBBBCCDFFGGHHHKKKLLOPPPSS02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SigristCHGFPBB02,
  author       = {Christian J. A. Sigrist and
                  Lorenzo Cerutti and
                  Nicolas Hulo and
                  Alexandre Gattiker and
                  Laurent Falquet and
                  Marco Pagni and
                  Amos Bairoch and
                  Philipp Bucher},
  title        = {{PROSITE:} {A} Documented Database Using Patterns and Profiles as
                  Motif Descriptors},
  journal      = {Briefings Bioinform.},
  volume       = {3},
  number       = {3},
  pages        = {265--274},
  year         = {2002},
  url          = {https://doi.org/10.1093/bib/3.3.265},
  doi          = {10.1093/BIB/3.3.265},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bib/SigristCHGFPBB02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FalquetPBHSHB03,
  author       = {Laurent Falquet and
                  Marco Pagni and
                  Philipp Bucher and
                  Nicolas Hulo and
                  Christian J. A. Sigrist and
                  Kay Hofmann and
                  Amos Bairoch},
  title        = {The {PROSITE} database, its status in 2002},
  journal      = {Nucleic Acids Res.},
  volume       = {30},
  number       = {1},
  pages        = {235--238},
  year         = {2002},
  url          = {https://doi.org/10.1093/nar/30.1.235},
  doi          = {10.1093/NAR/30.1.235},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/FalquetPBHSHB03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ApweilerABBBBBCCCDFFGHHJKKKLMMOPSSZ01,
  author       = {Rolf Apweiler and
                  Terri K. Attwood and
                  Amos Bairoch and
                  Alex Bateman and
                  Ewan Birney and
                  Margaret Biswas and
                  Philipp Bucher and
                  Lorenzo Cerutti and
                  Florence Corpet and
                  Michael D. R. Croning and
                  Richard Durbin and
                  Laurent Falquet and
                  Wolfgang Fleischmann and
                  J{\'{e}}r{\^{o}}me Gouzy and
                  Henning Hermjakob and
                  Nicolas Hulo and
                  Inge Jonassen and
                  Daniel Kahn and
                  Alexander Kanapin and
                  Youla Karavidopoulou and
                  Rodrigo Lopez and
                  Beate Marx and
                  Nicola J. Mulder and
                  Thomas M. Oinn and
                  Marco Pagni and
                  Florence Servant and
                  Christian J. A. Sigrist and
                  Evgeni M. Zdobnov},
  title        = {The InterPro database, an integrated documentation resource for protein
                  families, domains and functional sites},
  journal      = {Nucleic Acids Res.},
  volume       = {29},
  number       = {1},
  pages        = {37--40},
  year         = {2001},
  url          = {https://doi.org/10.1093/nar/29.1.37},
  doi          = {10.1093/NAR/29.1.37},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/ApweilerABBBBBCCCDFFGHHJKKKLMMOPSSZ01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PagniIJFJB01,
  author       = {Marco Pagni and
                  Christian Iseli and
                  Thomas Junier and
                  Laurent Falquet and
                  C. Victor Jongeneel and
                  Philipp Bucher},
  title        = {trEST, trGEN and Hits: access to databases of predicted protein sequences},
  journal      = {Nucleic Acids Res.},
  volume       = {29},
  number       = {1},
  pages        = {148--151},
  year         = {2001},
  url          = {https://doi.org/10.1093/nar/29.1.148},
  doi          = {10.1093/NAR/29.1.148},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PagniIJFJB01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ApweilerABBBBBCCCDFFGHHJKKKLMMOPSSZ00,
  author       = {Rolf Apweiler and
                  Terri K. Attwood and
                  Amos Bairoch and
                  Alex Bateman and
                  Ewan Birney and
                  Margaret Biswas and
                  Philipp Bucher and
                  Lorenzo Cerutti and
                  Florence Corpet and
                  Michael D. R. Croning and
                  Richard Durbin and
                  Laurent Falquet and
                  Wolfgang Fleischmann and
                  J{\'{e}}r{\^{o}}me Gouzy and
                  Henning Hermjakob and
                  Nicolas Hulo and
                  Inge Jonassen and
                  Daniel Kahn and
                  Alexander Kanapin and
                  Youla Karavidopoulou and
                  Rodrigo Lopez and
                  Beate Marx and
                  Nicola J. Mulder and
                  Thomas M. Oinn and
                  Marco Pagni and
                  Florence Servant and
                  Christian J. A. Sigrist and
                  Evgeni M. Zdobnov},
  title        = {InterPro-an integrated documentation resource for protein families,
                  domains and functional sites},
  journal      = {Bioinform.},
  volume       = {16},
  number       = {12},
  pages        = {1145--1150},
  year         = {2000},
  url          = {https://doi.org/10.1093/bioinformatics/16.12.1145},
  doi          = {10.1093/BIOINFORMATICS/16.12.1145},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ApweilerABBBBBCCCDFFGHHJKKKLMMOPSSZ00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HofmannBFB99,
  author       = {Kay Hofmann and
                  Philipp Bucher and
                  Laurent Falquet and
                  Amos Bairoch},
  title        = {The {PROSITE} database, its status in 1999},
  journal      = {Nucleic Acids Res.},
  volume       = {27},
  number       = {1},
  pages        = {215--219},
  year         = {1999},
  url          = {https://doi.org/10.1093/nar/27.1.215},
  doi          = {10.1093/NAR/27.1.215},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/HofmannBFB99.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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