Stop the war!Остановите войну!
for scientists:
default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDBibTeX records: Paolo Cazzaniga
@article{DBLP:journals/cim/PapettiTFCV23,
author = {Daniele M. Papetti and
Andrea Tangherloni and
Davide Farinati and
Paolo Cazzaniga and
Leonardo Vanneschi},
title = {Simplifying Fitness Landscapes Using Dilation Functions Evolved With
Genetic Programming},
journal = {{IEEE} Comput. Intell. Mag.},
volume = {18},
number = {1},
pages = {22--31},
year = {2023},
url = {https://doi.org/10.1109/MCI.2022.3222096},
doi = {10.1109/MCI.2022.3222096},
timestamp = {Fri, 10 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cim/PapettiTFCV23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/eswa/NobileCSCPAMPGCB23,
author = {Marco S. Nobile and
Giulia Capitoli and
Virgil Sowirono and
Francesca Clerici and
Isabella Piga and
Kirsten van Abeelen and
Fulvio Magni and
Fabio Pagni and
Stefania Galimberti and
Paolo Cazzaniga and
Daniela Besozzi},
title = {Unsupervised neural networks as a support tool for pathology diagnosis
in {MALDI-MSI} experiments: {A} case study on thyroid biopsies},
journal = {Expert Syst. Appl.},
volume = {215},
pages = {119296},
year = {2023},
url = {https://doi.org/10.1016/j.eswa.2022.119296},
doi = {10.1016/J.ESWA.2022.119296},
timestamp = {Sat, 13 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/eswa/NobileCSCPAMPGCB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/PapettiSNTLCBVPCN23,
author = {Daniele M. Papetti and
Simone Spolaor and
Iman Nazari and
Andrea Tirelli and
Tommaso Leonardi and
Chiara Caprioli and
Daniela Besozzi and
Thalia Vlachou and
Pier Giuseppe Pelicci and
Paolo Cazzaniga and
Marco S. Nobile},
title = {Barcode demultiplexing of nanopore sequencing raw signals by unsupervised
machine learning},
journal = {Frontiers Bioinform.},
volume = {3},
year = {2023},
url = {https://doi.org/10.3389/fbinf.2023.1067113},
doi = {10.3389/FBINF.2023.1067113},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fbinf/PapettiSNTLCBVPCN23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/TangherloniRMBC23,
author = {Andrea Tangherloni and
Simone G. Riva and
Brynelle Myers and
Francesca M. Buffa and
Paolo Cazzaniga},
title = {{MAGNETO:} Cell type marker panel generator from single-cell transcriptomic
data},
journal = {J. Biomed. Informatics},
volume = {147},
pages = {104510},
year = {2023},
url = {https://doi.org/10.1016/j.jbi.2023.104510},
doi = {10.1016/J.JBI.2023.104510},
timestamp = {Sun, 10 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/TangherloniRMBC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cec/CoelhoPTCBN23,
author = {Vasco Coelho and
Daniele M. Papetti and
Andrea Tangherloni and
Paolo Cazzaniga and
Daniela Besozzi and
Marco S. Nobile},
title = {The Domination Game: Dilating Bubbles to Fill Up Pareto Fronts},
booktitle = {{IEEE} Congress on Evolutionary Computation, {CEC} 2023, Chicago,
IL, USA, July 1-5, 2023},
pages = {1--8},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/CEC53210.2023.10253982},
doi = {10.1109/CEC53210.2023.10253982},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cec/CoelhoPTCBN23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibcb/RivaMCBT23,
author = {Simone G. Riva and
Brynelle Myers and
Paolo Cazzaniga and
Francesca M. Buffa and
Andrea Tangherloni},
title = {Consensus Clustering Strategy for Cell Type Assignments of scRNA-seq
Data},
booktitle = {{IEEE} Conference on Computational Intelligence in Bioinformatics
and Computational Biology, {CIBCB} 2023, Eindhoven, Netherlands, August
29-31, 2023},
pages = {1--8},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/CIBCB56990.2023.10264908},
doi = {10.1109/CIBCB56990.2023.10264908},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cibcb/RivaMCBT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/symmetry/RivaCNSRBT22,
author = {Simone G. Riva and
Paolo Cazzaniga and
Marco S. Nobile and
Simone Spolaor and
Leonardo Rundo and
Daniela Besozzi and
Andrea Tangherloni},
title = {SMGen: {A} Generator of Synthetic Models of Biochemical Reaction Networks},
journal = {Symmetry},
volume = {14},
number = {1},
pages = {119},
year = {2022},
url = {https://doi.org/10.3390/sym14010119},
doi = {10.3390/SYM14010119},
timestamp = {Tue, 15 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/symmetry/RivaCNSRBT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibcb/PapettiCACSBN22,
author = {Daniele M. Papetti and
Vasco Coelho and
Daniel A. Ashlock and
Paolo Cazzaniga and
Simone Spolaor and
Daniela Besozzi and
Marco S. Nobile},
title = {Local Bubble Dilation Functions: Hypersphere-bounded Landscape Deformations
Simplify Global Optimization},
booktitle = {{IEEE} Conference on Computational Intelligence in Bioinformatics
and Computational Biology, {CIBCB} 2022, Ottawa, ON, Canada, August
15-17, 2022},
pages = {1--8},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/CIBCB55180.2022.9863041},
doi = {10.1109/CIBCB55180.2022.9863041},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cibcb/PapettiCACSBN22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibcb/RivaMCT22,
author = {Simone G. Riva and
Brynelle Myers and
Paolo Cazzaniga and
Andrea Tangherloni},
title = {A Deep Learning Pipeline for the Automatic cell type Assignment of
scRNA-seq Data},
booktitle = {{IEEE} Conference on Computational Intelligence in Bioinformatics
and Computational Biology, {CIBCB} 2022, Ottawa, ON, Canada, August
15-17, 2022},
pages = {1--8},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/CIBCB55180.2022.9863034},
doi = {10.1109/CIBCB55180.2022.9863034},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cibcb/RivaMCT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibcb/TangherloniRMC22,
author = {Andrea Tangherloni and
Simone G. Riva and
Brynelle Myers and
Paolo Cazzaniga},
title = {Multi-objective Optimization for Marker Panel Identification in Single-cell
Data},
booktitle = {{IEEE} Conference on Computational Intelligence in Bioinformatics
and Computational Biology, {CIBCB} 2022, Ottawa, ON, Canada, August
15-17, 2022},
pages = {1--8},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/CIBCB55180.2022.9863042},
doi = {10.1109/CIBCB55180.2022.9863042},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cibcb/TangherloniRMC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cibb/2021,
editor = {Davide Chicco and
Angelo M. Facchiano and
Erica Tavazzi and
Enrico Longato and
Martina Vettoretti and
Anna Bernasconi and
Simone Avesani and
Paolo Cazzaniga},
title = {Computational Intelligence Methods for Bioinformatics and Biostatistics
- 17th International Meeting, {CIBB} 2021, Virtual Event, November
15-17, 2021, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {13483},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-20837-9},
doi = {10.1007/978-3-031-20837-9},
isbn = {978-3-031-20836-2},
timestamp = {Thu, 01 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cibb/2021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CazzanigaRBMSCR21,
author = {Paolo Cazzaniga and
Maria Raposo and
Daniela Besozzi and
Ivan Merelli and
Antonino Staiano and
Angelo Ciaramella and
Riccardo Rizzo and
Luca Manzoni},
title = {Selected papers from the 15th and 16th international conference on
Computational Intelligence Methods for Bioinformatics and Biostatistics},
journal = {{BMC} Bioinform.},
volume = {22-S},
number = {2},
pages = {90},
year = {2021},
url = {https://doi.org/10.1186/s12859-021-04027-5},
doi = {10.1186/S12859-021-04027-5},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/CazzanigaRBMSCR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijon/NobileCR21,
author = {Marco S. Nobile and
Paolo Cazzaniga and
Daniele Ramazzotti},
title = {Investigating the performance of multi-objective optimization when
learning Bayesian Networks},
journal = {Neurocomputing},
volume = {461},
pages = {281--291},
year = {2021},
url = {https://doi.org/10.1016/j.neucom.2021.07.049},
doi = {10.1016/J.NEUCOM.2021.07.049},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijon/NobileCR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/TangherloniNCCS21,
author = {Andrea Tangherloni and
Marco S. Nobile and
Paolo Cazzaniga and
Giulia Capitoli and
Simone Spolaor and
Leonardo Rundo and
Giancarlo Mauri and
Daniela Besozzi},
title = {FiCoS: {A} fine-grained and coarse-grained GPU-powered deterministic
simulator for biochemical networks},
journal = {PLoS Comput. Biol.},
volume = {17},
number = {9},
year = {2021},
url = {https://doi.org/10.1371/journal.pcbi.1009410},
doi = {10.1371/JOURNAL.PCBI.1009410},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/TangherloniNCCS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tjs/RundoTCMGWSMN21,
author = {Leonardo Rundo and
Andrea Tangherloni and
Paolo Cazzaniga and
Matteo Mistri and
Simone Galimberti and
Ramona Woitek and
Evis Sala and
Giancarlo Mauri and
Marco S. Nobile},
title = {A CUDA-powered method for the feature extraction and unsupervised
analysis of medical images},
journal = {J. Supercomput.},
volume = {77},
number = {8},
pages = {8514--8531},
year = {2021},
url = {https://doi.org/10.1007/s11227-020-03565-8},
doi = {10.1007/S11227-020-03565-8},
timestamp = {Thu, 29 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tjs/RundoTCMGWSMN21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/RivaCT21,
author = {Simone G. Riva and
Paolo Cazzaniga and
Andrea Tangherloni},
editor = {Yufei Huang and
Lukasz A. Kurgan and
Feng Luo and
Xiaohua Hu and
Yidong Chen and
Edward R. Dougherty and
Andrzej Kloczkowski and
Yaohang Li},
title = {Integration of Multiple scRNA-Seq Datasets on the Autoencoder Latent
Space},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2021, Houston, TX, USA, December 9-12, 2021},
pages = {2155--2162},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/BIBM52615.2021.9669807},
doi = {10.1109/BIBM52615.2021.9669807},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/RivaCT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cec/PapettiACBN21,
author = {Daniele M. Papetti and
Daniel A. Ashlock and
Paolo Cazzaniga and
Daniela Besozzi and
Marco S. Nobile},
title = {If You Can't Beat It, Squash It: Simplify Global Optimization by Evolving
Dilation Functions},
booktitle = {{IEEE} Congress on Evolutionary Computation, {CEC} 2021, Krak{\'{o}}w,
Poland, June 28 - July 1, 2021},
pages = {1414--1422},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/CEC45853.2021.9504708},
doi = {10.1109/CEC45853.2021.9504708},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cec/PapettiACBN21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cec/TangherloniRSBN21,
author = {Andrea Tangherloni and
Simone G. Riva and
Simone Spolaor and
Daniela Besozzi and
Marco S. Nobile and
Paolo Cazzaniga},
title = {The Impact of Representation on the Optimization of Marker Panels
for Single-cell {RNA} Data},
booktitle = {{IEEE} Congress on Evolutionary Computation, {CEC} 2021, Krak{\'{o}}w,
Poland, June 28 - July 1, 2021},
pages = {1423--1430},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/CEC45853.2021.9504808},
doi = {10.1109/CEC45853.2021.9504808},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cec/TangherloniRSBN21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibcb/SpolaorPCBN21,
author = {Simone Spolaor and
Daniele M. Papetti and
Paolo Cazzaniga and
Daniela Besozzi and
Marco S. Nobile},
editor = {Jennifer Hallinan and
Madhu Chetty and
Gonzalo Ruz Heredia and
Adrian Shatte and
Suryani Lim},
title = {A comparison of multi-objective optimization algorithms to identify
drug target combinations},
booktitle = {{IEEE} Conference on Computational Intelligence in Bioinformatics
and Computational Biology, {CIBCB} 2021, Melbourne, Australia, October
13-15, 2021},
pages = {1--8},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/CIBCB49929.2021.9562773},
doi = {10.1109/CIBCB49929.2021.9562773},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cibcb/SpolaorPCBN21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NobileVPSVCRMAC20,
author = {Marco S. Nobile and
Giuseppina Votta and
Roberta Palorini and
Simone Spolaor and
Humberto De Vitto and
Paolo Cazzaniga and
Francesca Ricciardiello and
Giancarlo Mauri and
Lilia Alberghina and
Ferdinando Chiaradonna and
Daniela Besozzi},
title = {Fuzzy modeling and global optimization to predict novel therapeutic
targets in cancer cells},
journal = {Bioinform.},
volume = {36},
number = {7},
pages = {2181--2188},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btz868},
doi = {10.1093/BIOINFORMATICS/BTZ868},
timestamp = {Fri, 14 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NobileVPSVCRMAC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/entropy/ManzoniPCSMBN20,
author = {Luca Manzoni and
Daniele M. Papetti and
Paolo Cazzaniga and
Simone Spolaor and
Giancarlo Mauri and
Daniela Besozzi and
Marco S. Nobile},
title = {Surfing on Fitness Landscapes: {A} Boost on Optimization by Fourier
Surrogate Modeling},
journal = {Entropy},
volume = {22},
number = {3},
pages = {285},
year = {2020},
url = {https://doi.org/10.3390/e22030285},
doi = {10.3390/E22030285},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/entropy/ManzoniPCSMBN20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fuin/BesozziMNSCVCRR20,
author = {Daniela Besozzi and
Luca Manzoni and
Marco S. Nobile and
Simone Spolaor and
Mauro Castelli and
Leonardo Vanneschi and
Paolo Cazzaniga and
Stefano Ruberto and
Leonardo Rundo and
Andrea Tangherloni},
title = {Computational Intelligence for Life Sciences},
journal = {Fundam. Informaticae},
volume = {171},
number = {1-4},
pages = {57--80},
year = {2020},
url = {https://doi.org/10.3233/FI-2020-1872},
doi = {10.3233/FI-2020-1872},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fuin/BesozziMNSCVCRR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijcisys/SpolaorFCKBN20,
author = {Simone Spolaor and
Caro Fuchs and
Paolo Cazzaniga and
Uzay Kaymak and
Daniela Besozzi and
Marco S. Nobile},
title = {Simpful: {A} User-Friendly Python Library for Fuzzy Logic},
journal = {Int. J. Comput. Intell. Syst.},
volume = {13},
number = {1},
pages = {1687--1698},
year = {2020},
url = {https://doi.org/10.2991/ijcis.d.201012.002},
doi = {10.2991/IJCIS.D.201012.002},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijcisys/SpolaorFCKBN20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tfs/SpolaorNMCB20,
author = {Simone Spolaor and
Marco S. Nobile and
Giancarlo Mauri and
Paolo Cazzaniga and
Daniela Besozzi},
title = {Coupling Mechanistic Approaches and Fuzzy Logic to Model and Simulate
Complex Systems},
journal = {{IEEE} Trans. Fuzzy Syst.},
volume = {28},
number = {8},
pages = {1748--1759},
year = {2020},
url = {https://doi.org/10.1109/TFUZZ.2019.2921517},
doi = {10.1109/TFUZZ.2019.2921517},
timestamp = {Wed, 26 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tfs/SpolaorNMCB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/NobileNVSCMPB20,
author = {Marco S. Nobile and
Eric Nisoli and
Thalia Vlachou and
Simone Spolaor and
Paolo Cazzaniga and
Giancarlo Mauri and
Pier Giuseppe Pelicci and
Daniela Besozzi},
title = {cuProCell: GPU-Accelerated Analysis of Cell Proliferation With Flow
Cytometry Data},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {24},
number = {11},
pages = {3173--3181},
year = {2020},
url = {https://doi.org/10.1109/JBHI.2020.3005423},
doi = {10.1109/JBHI.2020.3005423},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/titb/NobileNVSCMPB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cec/NobileSCPBAM20,
author = {Marco S. Nobile and
Simone Spolaor and
Paolo Cazzaniga and
Daniele M. Papetti and
Daniela Besozzi and
Daniel A. Ashlock and
Luca Manzoni},
title = {Which random is the best random? {A} study on sampling methods in
Fourier surrogate modeling},
booktitle = {{IEEE} Congress on Evolutionary Computation, {CEC} 2020, Glasgow,
United Kingdom, July 19-24, 2020},
pages = {1--8},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/CEC48606.2020.9185815},
doi = {10.1109/CEC48606.2020.9185815},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cec/NobileSCPBAM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibcb/NobileCSBM20,
author = {Marco S. Nobile and
Paolo Cazzaniga and
Simone Spolaor and
Daniela Besozzi and
Luca Manzoni},
title = {Fourier Surrogate Models of Dilated Fitness Landscapes in Systems
Biology : or how we learned to torture optimization problems until
they confess},
booktitle = {{IEEE} Conference on Computational Intelligence in Bioinformatics
and Computational Biology, {CIBCB} 2020, Vi{\~{n}}a del Mar, Chile,
October 27-29, 2020},
pages = {1--8},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/CIBCB48159.2020.9277715},
doi = {10.1109/CIBCB48159.2020.9277715},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cibcb/NobileCSBM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcnn/PapettiSBCAN20,
author = {Daniele M. Papetti and
Simone Spolaor and
Daniela Besozzi and
Paolo Cazzaniga and
Marco Antoniotti and
Marco S. Nobile},
title = {On the automatic calibration of fully analogical spiking neuromorphic
chips},
booktitle = {2020 International Joint Conference on Neural Networks, {IJCNN} 2020,
Glasgow, United Kingdom, July 19-24, 2020},
pages = {1--8},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/IJCNN48605.2020.9206654},
doi = {10.1109/IJCNN48605.2020.9206654},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ijcnn/PapettiSBCAN20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cibb/2019,
editor = {Paolo Cazzaniga and
Daniela Besozzi and
Ivan Merelli and
Luca Manzoni},
title = {Computational Intelligence Methods for Bioinformatics and Biostatistics
- 16th International Meeting, {CIBB} 2019, Bergamo, Italy, September
4-6, 2019, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {12313},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-63061-4},
doi = {10.1007/978-3-030-63061-4},
isbn = {978-3-030-63060-7},
timestamp = {Fri, 11 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cibb/2019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/asc/TangherloniSCBR19,
author = {Andrea Tangherloni and
Simone Spolaor and
Paolo Cazzaniga and
Daniela Besozzi and
Leonardo Rundo and
Giancarlo Mauri and
Marco S. Nobile},
title = {Biochemical parameter estimation vs. benchmark functions: {A} comparative
study of optimization performance and representation design},
journal = {Appl. Soft Comput.},
volume = {81},
year = {2019},
url = {https://doi.org/10.1016/j.asoc.2019.105494},
doi = {10.1016/J.ASOC.2019.105494},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/asc/TangherloniSCBR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NobileVSBCLMPB19,
author = {Marco S. Nobile and
Thalia Vlachou and
Simone Spolaor and
Daniela Bossi and
Paolo Cazzaniga and
Luisa Lanfrancone and
Giancarlo Mauri and
Pier Giuseppe Pelicci and
Daniela Besozzi},
title = {Modeling cell proliferation in human acute myeloid leukemia xenografts},
journal = {Bioinform.},
volume = {35},
number = {18},
pages = {3378--3386},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz063},
doi = {10.1093/BIOINFORMATICS/BTZ063},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/NobileVSBCLMPB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TangherloniSRNC19,
author = {Andrea Tangherloni and
Simone Spolaor and
Leonardo Rundo and
Marco S. Nobile and
Paolo Cazzaniga and
Giancarlo Mauri and
Pietro Li{\`{o}} and
Ivan Merelli and
Daniela Besozzi},
title = {GenHap: a novel computational method based on genetic algorithms for
haplotype assembly},
journal = {{BMC} Bioinform.},
volume = {20-S},
number = {4},
pages = {172:1--172:14},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-2691-y},
doi = {10.1186/S12859-019-2691-Y},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TangherloniSRNC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmpb/RundoTCNRGVMBM19,
author = {Leonardo Rundo and
Andrea Tangherloni and
Paolo Cazzaniga and
Marco S. Nobile and
Giorgio Russo and
Maria Carla Gilardi and
Salvatore Vitabile and
Giancarlo Mauri and
Daniela Besozzi and
Carmelo Militello},
title = {A novel framework for {MR} image segmentation and quantification by
using MedGA},
journal = {Comput. Methods Programs Biomed.},
volume = {176},
pages = {159--172},
year = {2019},
url = {https://doi.org/10.1016/j.cmpb.2019.04.016},
doi = {10.1016/J.CMPB.2019.04.016},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cmpb/RundoTCNRGVMBM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/eswa/RundoTNMBMC19,
author = {Leonardo Rundo and
Andrea Tangherloni and
Marco S. Nobile and
Carmelo Militello and
Daniela Besozzi and
Giancarlo Mauri and
Paolo Cazzaniga},
title = {MedGA: {A} novel evolutionary method for image enhancement in medical
imaging systems},
journal = {Expert Syst. Appl.},
volume = {119},
pages = {387--399},
year = {2019},
url = {https://doi.org/10.1016/j.eswa.2018.11.013},
doi = {10.1016/J.ESWA.2018.11.013},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/eswa/RundoTNMBMC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijon/RundoHNZHMTNFBG19,
author = {Leonardo Rundo and
Changhee Han and
Yudai Nagano and
Jin Zhang and
Ryuichiro Hataya and
Carmelo Militello and
Andrea Tangherloni and
Marco S. Nobile and
Claudio Ferretti and
Daniela Besozzi and
Maria Carla Gilardi and
Salvatore Vitabile and
Giancarlo Mauri and
Hideki Nakayama and
Paolo Cazzaniga},
title = {USE-Net: Incorporating Squeeze-and-Excitation blocks into U-Net for
prostate zonal segmentation of multi-institutional {MRI} datasets},
journal = {Neurocomputing},
volume = {365},
pages = {31--43},
year = {2019},
url = {https://doi.org/10.1016/j.neucom.2019.07.006},
doi = {10.1016/J.NEUCOM.2019.07.006},
timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijon/RundoHNZHMTNFBG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tjs/NobileCBM19,
author = {Marco S. Nobile and
Paolo Cazzaniga and
Daniela Besozzi and
Giancarlo Mauri},
title = {ginSODA: massive parallel integration of stiff {ODE} systems on GPUs},
journal = {J. Supercomput.},
volume = {75},
number = {12},
pages = {7844--7856},
year = {2019},
url = {https://doi.org/10.1007/s11227-018-2549-5},
doi = {10.1007/S11227-018-2549-5},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tjs/NobileCBM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cec/NobileCA19,
author = {Marco S. Nobile and
Paolo Cazzaniga and
Daniel A. Ashlock},
title = {Dilation Functions in Global Optimization},
booktitle = {{IEEE} Congress on Evolutionary Computation, {CEC} 2019, Wellington,
New Zealand, June 10-13, 2019},
pages = {2300--2307},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/CEC.2019.8790247},
doi = {10.1109/CEC.2019.8790247},
timestamp = {Wed, 16 Oct 2019 14:14:52 +0200},
biburl = {https://dblp.org/rec/conf/cec/NobileCA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibcb/NobileVSCMPB19,
author = {Marco S. Nobile and
Thalia Vlachou and
Simone Spolaor and
Paolo Cazzaniga and
Giancarlo Mauri and
Pier Giuseppe Pelicci and
Daniela Besozzi},
editor = {Giacomo Baruzzo and
Sebastian Daberdaku and
Barbara Di Camillo and
Simone Furini and
Emanuele Domenico Giordano and
Giuseppe Nicosia},
title = {ProCell: Investigating cell proliferation with Swarm Intelligence},
booktitle = {{IEEE} Conference on Computational Intelligence in Bioinformatics
and Computational Biology, {CIBCB} 2019, Siena, Italy, July 9-11,
2019},
pages = {1--8},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/CIBCB.2019.8791468},
doi = {10.1109/CIBCB.2019.8791468},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cibcb/NobileVSCMPB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pact/RundoTGCWSNM19,
author = {Leonardo Rundo and
Andrea Tangherloni and
Simone Galimberti and
Paolo Cazzaniga and
Ramona Woitek and
Evis Sala and
Marco S. Nobile and
Giancarlo Mauri},
editor = {Victor Malyshkin},
title = {HaraliCU: GPU-Powered Haralick Feature Extraction on Medical Images
Exploiting the Full Dynamics of Gray-Scale Levels},
booktitle = {Parallel Computing Technologies - 15th International Conference, PaCT
2019, Almaty, Kazakhstan, August 19-23, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11657},
pages = {304--318},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-25636-4\_24},
doi = {10.1007/978-3-030-25636-4\_24},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/pact/RundoTGCWSNM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1904-08254,
author = {Leonardo Rundo and
Changhee Han and
Yudai Nagano and
Jin Zhang and
Ryuichiro Hataya and
Carmelo Militello and
Andrea Tangherloni and
Marco S. Nobile and
Claudio Ferretti and
Daniela Besozzi and
Maria Carla Gilardi and
Salvatore Vitabile and
Giancarlo Mauri and
Hideki Nakayama and
Paolo Cazzaniga},
title = {USE-Net: incorporating Squeeze-and-Excitation blocks into U-Net for
prostate zonal segmentation of multi-institutional {MRI} datasets},
journal = {CoRR},
volume = {abs/1904.08254},
year = {2019},
url = {http://arxiv.org/abs/1904.08254},
eprinttype = {arXiv},
eprint = {1904.08254},
timestamp = {Fri, 26 Apr 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1904-08254.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/swevo/NobileCBCMP18,
author = {Marco S. Nobile and
Paolo Cazzaniga and
Daniela Besozzi and
Riccardo Colombo and
Giancarlo Mauri and
Gabriella Pasi},
title = {Fuzzy Self-Tuning {PSO:} {A} settings-free algorithm for global optimization},
journal = {Swarm Evol. Comput.},
volume = {39},
pages = {70--85},
year = {2018},
url = {https://doi.org/10.1016/j.swevo.2017.09.001},
doi = {10.1016/J.SWEVO.2017.09.001},
timestamp = {Sat, 22 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/swevo/NobileCBCMP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cec/NobileTRSBMC18,
author = {Marco S. Nobile and
Andrea Tangherloni and
Leonardo Rundo and
Simone Spolaor and
Daniela Besozzi and
Giancarlo Mauri and
Paolo Cazzaniga},
title = {Computational Intelligence for Parameter Estimation of Biochemical
Systems},
booktitle = {2018 {IEEE} Congress on Evolutionary Computation, {CEC} 2018, Rio
de Janeiro, Brazil, July 8-13, 2018},
pages = {1--8},
publisher = {{IEEE}},
year = {2018},
url = {https://doi.org/10.1109/CEC.2018.8477873},
doi = {10.1109/CEC.2018.8477873},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cec/NobileTRSBMC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibb/TotisTBCNBP018,
author = {Niccol{\'{o}} Totis and
Andrea Tangherloni and
Marco Beccuti and
Paolo Cazzaniga and
Marco S. Nobile and
Daniela Besozzi and
Marzio Pennisi and
Francesco Pappalardo},
editor = {Maria Raposo and
Paulo A. Ribeiro and
Susana S{\'{e}}rio and
Antonino Staiano and
Angelo Ciaramella},
title = {Efficient and Settings-Free Calibration of Detailed Kinetic Metabolic
Models with Enzyme Isoforms Characterization},
booktitle = {Computational Intelligence Methods for Bioinformatics and Biostatistics
- 15th International Meeting, {CIBB} 2018, Caparica, Portugal, September
6-8, 2018, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {11925},
pages = {187--202},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-34585-3\_17},
doi = {10.1007/978-3-030-34585-3\_17},
timestamp = {Fri, 07 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cibb/TotisTBCNBP018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/europar/BeccutiCPBNPRT018,
author = {Marco Beccuti and
Paolo Cazzaniga and
Marzio Pennisi and
Daniela Besozzi and
Marco S. Nobile and
Simone Pernice and
Giulia Russo and
Andrea Tangherloni and
Francesco Pappalardo},
editor = {Gabriele Mencagli and
Dora B. Heras and
Valeria Cardellini and
Emiliano Casalicchio and
Emmanuel Jeannot and
Felix Wolf and
Antonio Salis and
Claudio Schifanella and
Ravi Reddy Manumachu and
Laura Ricci and
Marco Beccuti and
Laura Antonelli and
Jos{\'{e}} Daniel Garc{\'{\i}}a S{\'{a}}nchez and
Stephen L. Scott},
title = {{GPU} Accelerated Analysis of Treg-Teff Cross Regulation in Relapsing-Remitting
Multiple Sclerosis},
booktitle = {Euro-Par 2018: Parallel Processing Workshops - Euro-Par 2018 International
Workshops, Turin, Italy, August 27-28, 2018, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {11339},
pages = {626--637},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-10549-5\_49},
doi = {10.1007/978-3-030-10549-5\_49},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/europar/BeccutiCPBNPRT018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/europar/TangherloniRSNM18,
author = {Andrea Tangherloni and
Leonardo Rundo and
Simone Spolaor and
Marco S. Nobile and
Ivan Merelli and
Daniela Besozzi and
Giancarlo Mauri and
Paolo Cazzaniga and
Pietro Li{\`{o}}},
editor = {Gabriele Mencagli and
Dora B. Heras and
Valeria Cardellini and
Emiliano Casalicchio and
Emmanuel Jeannot and
Felix Wolf and
Antonio Salis and
Claudio Schifanella and
Ravi Reddy Manumachu and
Laura Ricci and
Marco Beccuti and
Laura Antonelli and
Jos{\'{e}} Daniel Garc{\'{\i}}a S{\'{a}}nchez and
Stephen L. Scott},
title = {High Performance Computing for Haplotyping: Models and Platforms},
booktitle = {Euro-Par 2018: Parallel Processing Workshops - Euro-Par 2018 International
Workshops, Turin, Italy, August 27-28, 2018, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {11339},
pages = {650--661},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-10549-5\_51},
doi = {10.1007/978-3-030-10549-5\_51},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/europar/TangherloniRSNM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pdp/TangherloniRSCN18,
author = {Andrea Tangherloni and
Leonardo Rundo and
Simone Spolaor and
Paolo Cazzaniga and
Marco S. Nobile},
editor = {Ivan Merelli and
Pietro Li{\`{o}} and
Igor V. Kotenko},
title = {GPU-Powered Multi-Swarm Parameter Estimation of Biological Systems:
{A} Master-Slave Approach},
booktitle = {26th Euromicro International Conference on Parallel, Distributed and
Network-based Processing, {PDP} 2018, Cambridge, United Kingdom, March
21-23, 2018},
pages = {698--705},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.org/10.1109/PDP2018.2018.00115},
doi = {10.1109/PDP2018.2018.00115},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/pdp/TangherloniRSCN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1808-01345,
author = {Paolo Cazzaniga and
Marco S. Nobile and
Daniele Ramazzotti},
title = {Multi-objective optimization to explicitly account for model complexity
when learning Bayesian Networks},
journal = {CoRR},
volume = {abs/1808.01345},
year = {2018},
url = {http://arxiv.org/abs/1808.01345},
eprinttype = {arXiv},
eprint = {1808.01345},
timestamp = {Sat, 23 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1808-01345.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/NobileCTB17,
author = {Marco S. Nobile and
Paolo Cazzaniga and
Andrea Tangherloni and
Daniela Besozzi},
title = {Graphics processing units in bioinformatics, computational biology
and systems biology},
journal = {Briefings Bioinform.},
volume = {18},
number = {5},
pages = {870--885},
year = {2017},
url = {https://doi.org/10.1093/bib/bbw058},
doi = {10.1093/BIB/BBW058},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/NobileCTB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HarrisNPLBMCL17,
author = {Leonard A. Harris and
Marco S. Nobile and
James C. Pino and
Alexander L. R. Lubbock and
Daniela Besozzi and
Giancarlo Mauri and
Paolo Cazzaniga and
Carlos F. Lopez},
title = {GPU-powered model analysis with PySB/cupSODA},
journal = {Bioinform.},
volume = {33},
number = {21},
pages = {3492--3494},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx420},
doi = {10.1093/BIOINFORMATICS/BTX420},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HarrisNPLBMCL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TangherloniNBMC17,
author = {Andrea Tangherloni and
Marco S. Nobile and
Daniela Besozzi and
Giancarlo Mauri and
Paolo Cazzaniga},
title = {{LASSIE:} simulating large-scale models of biochemical systems on
GPUs},
journal = {{BMC} Bioinform.},
volume = {18},
number = {1},
pages = {246},
year = {2017},
url = {https://doi.org/10.1186/s12859-017-1666-0},
doi = {10.1186/S12859-017-1666-0},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TangherloniNBMC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fuin/NobilePSMCMB17,
author = {Marco S. Nobile and
Antonio E. Porreca and
Simone Spolaor and
Luca Manzoni and
Paolo Cazzaniga and
Giancarlo Mauri and
Daniela Besozzi},
title = {Efficient Simulation of Reaction Systems on Graphics Processing Units},
journal = {Fundam. Informaticae},
volume = {154},
number = {1-4},
pages = {307--321},
year = {2017},
url = {https://doi.org/10.3233/FI-2017-1568},
doi = {10.3233/FI-2017-1568},
timestamp = {Fri, 18 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fuin/NobilePSMCMB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tjs/TangherloniNCBM17,
author = {Andrea Tangherloni and
Marco S. Nobile and
Paolo Cazzaniga and
Daniela Besozzi and
Giancarlo Mauri},
title = {Gillespie's Stochastic Simulation Algorithm on {MIC} coprocessors},
journal = {J. Supercomput.},
volume = {73},
number = {2},
pages = {676--686},
year = {2017},
url = {https://doi.org/10.1007/s11227-016-1778-8},
doi = {10.1007/S11227-016-1778-8},
timestamp = {Fri, 22 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tjs/TangherloniNCBM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibb/SpolaorTRCN17,
author = {Simone Spolaor and
Andrea Tangherloni and
Leonardo Rundo and
Paolo Cazzaniga and
Marco S. Nobile},
editor = {Massimo Bartoletti and
Annalisa Barla and
Andrea Bracciali and
Gunnar W. Klau and
Leif E. Peterson and
Alberto Policriti and
Roberto Tagliaferri},
title = {Estimation of Kinetic Reaction Constants: Exploiting Reboot Strategies
to Improve PSO's Performance},
booktitle = {Computational Intelligence Methods for Bioinformatics and Biostatistics
- 14th International Meeting, {CIBB} 2017, Cagliari, Italy, September
7-9, 2017, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {10834},
pages = {92--102},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-030-14160-8\_10},
doi = {10.1007/978-3-030-14160-8\_10},
timestamp = {Tue, 14 May 2019 10:00:54 +0200},
biburl = {https://dblp.org/rec/conf/cibb/SpolaorTRCN17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibcb/SpolaorTRNC17,
author = {Simone Spolaor and
Andrea Tangherloni and
Leonardo Rundo and
Marco S. Nobile and
Paolo Cazzaniga},
title = {Reboot strategies in particle swarm optimization and their impact
on parameter estimation of biochemical systems},
booktitle = {{IEEE} Conference on Computational Intelligence in Bioinformatics
and Computational Biology, {CIBCB} 2017, Manchester, United Kingdom,
August 23-25, 2017},
pages = {1--8},
publisher = {{IEEE}},
year = {2017},
url = {https://doi.org/10.1109/CIBCB.2017.8058550},
doi = {10.1109/CIBCB.2017.8058550},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cibcb/SpolaorTRNC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/RamazzottiNCMA17,
author = {Daniele Ramazzotti and
Marco S. Nobile and
Paolo Cazzaniga and
Giancarlo Mauri and
Marco Antoniotti},
title = {Parallel Implementation of Efficient Search Schemes for the Inference
of Cancer Progression Models},
journal = {CoRR},
volume = {abs/1703.03038},
year = {2017},
url = {http://arxiv.org/abs/1703.03038},
eprinttype = {arXiv},
eprint = {1703.03038},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/RamazzottiNCMA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerjpre/TangherloniSRNM17,
author = {Andrea Tangherloni and
Simone Spolaor and
Leonardo Rundo and
Marco S. Nobile and
Ivan Merelli and
Paolo Cazzaniga and
Daniela Besozzi and
Giancarlo Mauri and
Pietro Li{\`{o}}},
title = {GenHap: {A} novel computational method based on genetic algorithms
for haplotype assembly},
journal = {PeerJ Prepr.},
volume = {5},
pages = {e3246},
year = {2017},
url = {https://doi.org/10.7287/peerj.preprints.3246v1},
doi = {10.7287/PEERJ.PREPRINTS.3246V1},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/peerjpre/TangherloniSRNM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cec/NobileTBC16,
author = {Marco S. Nobile and
Andrea Tangherloni and
Daniela Besozzi and
Paolo Cazzaniga},
title = {GPU-powered and settings-free parameter estimation of biochemical
systems},
booktitle = {{IEEE} Congress on Evolutionary Computation, {CEC} 2016, Vancouver,
BC, Canada, July 24-29, 2016},
pages = {32--39},
publisher = {{IEEE}},
year = {2016},
url = {https://doi.org/10.1109/CEC.2016.7743775},
doi = {10.1109/CEC.2016.7743775},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cec/NobileTBC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibb/CumboNDCMC16,
author = {Fabio Cumbo and
Marco S. Nobile and
Chiara Damiani and
Riccardo Colombo and
Giancarlo Mauri and
Paolo Cazzaniga},
editor = {Andrea Bracciali and
Giulio Caravagna and
David Gilbert and
Roberto Tagliaferri},
title = {{COSYS:} {A} Computational Infrastructure for Systems Biology},
booktitle = {Computational Intelligence Methods for Bioinformatics and Biostatistics
- 13th International Meeting, {CIBB} 2016, Stirling, UK, September
1-3, 2016, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {10477},
pages = {82--92},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-67834-4\_7},
doi = {10.1007/978-3-319-67834-4\_7},
timestamp = {Tue, 14 May 2019 10:00:54 +0200},
biburl = {https://dblp.org/rec/conf/cibb/CumboNDCMC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibcb/RamazzottiNCMA16,
author = {Daniele Ramazzotti and
Marco S. Nobile and
Paolo Cazzaniga and
Giancarlo Mauri and
Marco Antoniotti},
title = {Parallel implementation of efficient search schemes for the inference
of cancer progression models},
booktitle = {2016 {IEEE} Conference on Computational Intelligence in Bioinformatics
and Computational Biology, {CIBCB} 2016, Chiang Mai, Thailand, October
5-7, 2016},
pages = {1--6},
publisher = {{IEEE}},
year = {2016},
url = {https://doi.org/10.1109/CIBCB.2016.7758109},
doi = {10.1109/CIBCB.2016.7758109},
timestamp = {Wed, 16 Oct 2019 14:14:48 +0200},
biburl = {https://dblp.org/rec/conf/cibcb/RamazzottiNCMA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibcb/TangherloniNC16,
author = {Andrea Tangherloni and
Marco S. Nobile and
Paolo Cazzaniga},
title = {GPU-powered Bat Algorithm for the parameter estimation of biochemical
kinetic values},
booktitle = {2016 {IEEE} Conference on Computational Intelligence in Bioinformatics
and Computational Biology, {CIBCB} 2016, Chiang Mai, Thailand, October
5-7, 2016},
pages = {1--6},
publisher = {{IEEE}},
year = {2016},
url = {https://doi.org/10.1109/CIBCB.2016.7758103},
doi = {10.1109/CIBCB.2016.7758103},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cibcb/TangherloniNC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibcb/CazzanigaNB15,
author = {Paolo Cazzaniga and
Marco S. Nobile and
Daniela Besozzi},
title = {The impact of particles initialization in {PSO:} Parameter estimation
as a case in point},
booktitle = {{IEEE} Conference on Computational Intelligence in Bioinformatics
and Computational Biology, {CIBCB} 2015, Niagara Falls, ON, Canada,
August 12-15, 2015},
pages = {1--8},
publisher = {{IEEE}},
year = {2015},
url = {https://doi.org/10.1109/CIBCB.2015.7300288},
doi = {10.1109/CIBCB.2015.7300288},
timestamp = {Wed, 16 Oct 2019 14:14:48 +0200},
biburl = {https://dblp.org/rec/conf/cibcb/CazzanigaNB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fuzzIEEE/NobilePCBCM15,
author = {Marco S. Nobile and
Gabriella Pasi and
Paolo Cazzaniga and
Daniela Besozzi and
Riccardo Colombo and
Giancarlo Mauri},
editor = {Adnan Yazici and
Nikhil R. Pal and
Uzay Kaymak and
Trevor Martin and
Hisao Ishibuchi and
Chin{-}Teng Lin and
Jo{\~{a}}o M. C. Sousa and
B{\"{u}}lent T{\"{u}}tmez},
title = {Proactive Particles in Swarm Optimization: {A} self-tuning algorithm
based on Fuzzy Logic},
booktitle = {2015 {IEEE} International Conference on Fuzzy Systems, {FUZZ-IEEE}
2015, Istanbul, Turkey, August 2-5, 2015},
pages = {1--8},
publisher = {{IEEE}},
year = {2015},
url = {https://doi.org/10.1109/FUZZ-IEEE.2015.7337957},
doi = {10.1109/FUZZ-IEEE.2015.7337957},
timestamp = {Wed, 16 Oct 2019 14:14:52 +0200},
biburl = {https://dblp.org/rec/conf/fuzzIEEE/NobilePCBCM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pact/CazzanigaFNBM15,
author = {Paolo Cazzaniga and
F. Ferrara and
Marco S. Nobile and
Daniela Besozzi and
Giancarlo Mauri},
editor = {Victor Malyshkin},
title = {Parallelizing Biochemical Stochastic Simulations: {A} Comparison of
GPUs and Intel Xeon Phi Processors},
booktitle = {Parallel Computing Technologies - 13th International Conference, PaCT
2015, Petrozavodsk, Russia, August 31 - September 4, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9251},
pages = {363--374},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-21909-7\_36},
doi = {10.1007/978-3-319-21909-7\_36},
timestamp = {Tue, 14 May 2019 10:00:36 +0200},
biburl = {https://dblp.org/rec/conf/pact/CazzanigaFNBM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tjs/NobileCBM14,
author = {Marco S. Nobile and
Paolo Cazzaniga and
Daniela Besozzi and
Giancarlo Mauri},
title = {GPU-accelerated simulations of mass-action kinetics models with cupSODA},
journal = {J. Supercomput.},
volume = {69},
number = {1},
pages = {17--24},
year = {2014},
url = {https://doi.org/10.1007/s11227-014-1208-8},
doi = {10.1007/S11227-014-1208-8},
timestamp = {Fri, 22 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tjs/NobileCBM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cec/NobileCCBM14,
author = {Marco S. Nobile and
Andrea G. Citrolo and
Paolo Cazzaniga and
Daniela Besozzi and
Giancarlo Mauri},
title = {A memetic hybrid method for the Molecular Distance Geometry Problem
with incomplete information},
booktitle = {Proceedings of the {IEEE} Congress on Evolutionary Computation, {CEC}
2014, Beijing, China, July 6-11, 2014},
pages = {1014--1021},
publisher = {{IEEE}},
year = {2014},
url = {https://doi.org/10.1109/CEC.2014.6900386},
doi = {10.1109/CEC.2014.6900386},
timestamp = {Thu, 16 Dec 2021 14:03:16 +0100},
biburl = {https://dblp.org/rec/conf/cec/NobileCCBM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pdp/BelliniBCMN14,
author = {Matteo Bellini and
Daniela Besozzi and
Paolo Cazzaniga and
Giancarlo Mauri and
Marco S. Nobile},
title = {Simulation and Analysis of the Blood Coagulation Cascade Accelerated
on {GPU}},
booktitle = {22nd Euromicro International Conference on Parallel, Distributed,
and Network-Based Processing, {PDP} 2014, Torino, Italy, February
12-14, 2014},
pages = {590--593},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/PDP.2014.52},
doi = {10.1109/PDP.2014.52},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/pdp/BelliniBCMN14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AmaraCCPCFBP13,
author = {Flavio Amara and
Riccardo Colombo and
Paolo Cazzaniga and
Dario Pescini and
Attila Csik{\'{a}}sz{-}Nagy and
Marco Falconi and
Daniela Besozzi and
Paolo Plevani},
title = {In vivo and in silico analysis of {PCNA} ubiquitylation in the activation
of the Post Replication Repair pathway in S. cerevisiae},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {24},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-24},
doi = {10.1186/1752-0509-7-24},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AmaraCCPCFBP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apn/NobileBCM13,
author = {Marco S. Nobile and
Daniela Besozzi and
Paolo Cazzaniga and
Giancarlo Mauri},
editor = {Gianfranco Balbo and
Monika Heiner},
title = {The foundation of Evolutionary Petri Nets},
booktitle = {Proceedings of the International Workshop on Biological Processes
{\&} Petri Nets, Milano, Italy, June 24, 2013},
series = {{CEUR} Workshop Proceedings},
volume = {988},
pages = {60--74},
publisher = {CEUR-WS.org},
year = {2013},
url = {https://ceur-ws.org/Vol-988/paper6.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:38 +0100},
biburl = {https://dblp.org/rec/conf/apn/NobileBCM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cec/NobileBCPM13,
author = {Marco S. Nobile and
Daniela Besozzi and
Paolo Cazzaniga and
Dario Pescini and
Giancarlo Mauri},
title = {Reverse engineering of kinetic reaction networks by means of Cartesian
Genetic Programming and Particle Swarm Optimization},
booktitle = {Proceedings of the {IEEE} Congress on Evolutionary Computation, {CEC}
2013, Cancun, Mexico, June 20-23, 2013},
pages = {1594--1601},
publisher = {{IEEE}},
year = {2013},
url = {https://doi.org/10.1109/CEC.2013.6557752},
doi = {10.1109/CEC.2013.6557752},
timestamp = {Wed, 16 Oct 2019 14:14:52 +0200},
biburl = {https://dblp.org/rec/conf/cec/NobileBCPM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pact/NobileBCMP13,
author = {Marco S. Nobile and
Daniela Besozzi and
Paolo Cazzaniga and
Giancarlo Mauri and
Dario Pescini},
editor = {Victor Malyshkin},
title = {cupSODA: {A} CUDA-Powered Simulator of Mass-Action Kinetics},
booktitle = {Parallel Computing Technologies - 12th International Conference, PaCT
2013, St. Petersburg, Russia, September 30 - October 4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7979},
pages = {344--357},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-39958-9\_32},
doi = {10.1007/978-3-642-39958-9\_32},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/pact/NobileBCMP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/corr/BesozziCCNPR13,
author = {Daniela Besozzi and
Giulio Caravagna and
Paolo Cazzaniga and
Marco S. Nobile and
Dario Pescini and
Alessandro Re},
editor = {Alex Graudenzi and
Giulio Caravagna and
Giancarlo Mauri and
Marco Antoniotti},
title = {GPU-powered Simulation Methodologies for Biological Systems},
booktitle = {Proceedings Wivace 2013 - Italian Workshop on Artificial Life and
Evolutionary Computation, Milan, Italy, July 1-2, 2013},
series = {{EPTCS}},
volume = {130},
pages = {87--91},
year = {2013},
url = {https://doi.org/10.4204/EPTCS.130.14},
doi = {10.4204/EPTCS.130.14},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/BesozziCCNPR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ejbsb/BesozziCPMCM12,
author = {Daniela Besozzi and
Paolo Cazzaniga and
Dario Pescini and
Giancarlo Mauri and
Sonia Colombo and
Enzo Martegani},
title = {The role of feedback control mechanisms on the establishment of oscillatory
regimes in the Ras/cAMP/PKA pathway in S. cerevisiae},
journal = {{EURASIP} J. Bioinform. Syst. Biol.},
volume = {2012},
pages = {10},
year = {2012},
url = {https://doi.org/10.1186/1687-4153-2012-10},
doi = {10.1186/1687-4153-2012-10},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ejbsb/BesozziCPMCM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/evoW/NobileBCMP12,
author = {Marco S. Nobile and
Daniela Besozzi and
Paolo Cazzaniga and
Giancarlo Mauri and
Dario Pescini},
editor = {Mario Giacobini and
Leonardo Vanneschi and
William S. Bush},
title = {A GPU-Based Multi-swarm {PSO} Method for Parameter Estimation in Stochastic
Biological Systems Exploiting Discrete-Time Target Series},
booktitle = {Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics
- 10th European Conference, EvoBIO 2012, M{\'{a}}laga, Spain,
April 11-13, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7246},
pages = {74--85},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29066-4\_7},
doi = {10.1007/978-3-642-29066-4\_7},
timestamp = {Tue, 14 May 2019 10:00:37 +0200},
biburl = {https://dblp.org/rec/conf/evoW/NobileBCMP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gecco/NobileBCMP12,
author = {Marco S. Nobile and
Daniela Besozzi and
Paolo Cazzaniga and
Giancarlo Mauri and
Dario Pescini},
editor = {Terence Soule and
Jason H. Moore},
title = {Estimating reaction constants in stochastic biological systems with
a multi-swarm {PSO} running on GPUs},
booktitle = {Genetic and Evolutionary Computation Conference, {GECCO} '12, Philadelphia,
PA, USA, July 7-11, 2012, Companion Material Proceedings},
pages = {1421--1422},
publisher = {{ACM}},
year = {2012},
url = {https://doi.org/10.1145/2330784.2330964},
doi = {10.1145/2330784.2330964},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/gecco/NobileBCMP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijfcs/BesozziCCMP11,
author = {Daniela Besozzi and
Paolo Cazzaniga and
Stefania Cocolo and
Giancarlo Mauri and
Dario Pescini},
title = {Modeling Diffusion in a Signal Transduction Pathway: the Use of Virtual
Volumes in {P} Systems},
journal = {Int. J. Found. Comput. Sci.},
volume = {22},
number = {1},
pages = {89--96},
year = {2011},
url = {https://doi.org/10.1142/S012905411100785X},
doi = {10.1142/S012905411100785X},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijfcs/BesozziCCMP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pact/MerelliPMCMMM11,
author = {Ivan Merelli and
Dario Pescini and
Ettore Mosca and
Paolo Cazzaniga and
Carlo Maj and
Giancarlo Mauri and
Luciano Milanesi},
editor = {Victor Malyshkin},
title = {Grid Computing for Sensitivity Analysis of Stochastic Biological Models},
booktitle = {Parallel Computing Technologies - 11th International Conference, PaCT
2011, Kazan, Russia, September 19-23, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6873},
pages = {62--73},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-23178-0\_6},
doi = {10.1007/978-3-642-23178-0\_6},
timestamp = {Tue, 14 May 2019 10:00:36 +0200},
biburl = {https://dblp.org/rec/conf/pact/MerelliPMCMMM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nc/LeporatiBCPF10,
author = {Alberto Leporati and
Daniela Besozzi and
Paolo Cazzaniga and
Dario Pescini and
Claudio Ferretti},
title = {Computing with energy and chemical reactions},
journal = {Nat. Comput.},
volume = {9},
number = {2},
pages = {493--512},
year = {2010},
url = {https://doi.org/10.1007/s11047-009-9160-x},
doi = {10.1007/S11047-009-9160-X},
timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nc/LeporatiBCPF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/membrane/BesozziCMP10,
author = {Daniela Besozzi and
Paolo Cazzaniga and
Giancarlo Mauri and
Dario Pescini},
editor = {Marian Gheorghe and
Thomas Hinze and
Gheorghe Paun and
Grzegorz Rozenberg and
Arto Salomaa},
title = {BioSimWare: {A} Software for the Modeling, Simulation and Analysis
of Biological Systems},
booktitle = {Membrane Computing - 11th International Conference, {CMC} 2010, Jena,
Germany, August 24-27, 2010. Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {6501},
pages = {119--143},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-18123-8\_12},
doi = {10.1007/978-3-642-18123-8\_12},
timestamp = {Mon, 03 Jan 2022 22:42:19 +0100},
biburl = {https://dblp.org/rec/conf/membrane/BesozziCMP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/membrane/MoscaCPMM10,
author = {Ettore Mosca and
Paolo Cazzaniga and
Dario Pescini and
Giancarlo Mauri and
Luciano Milanesi},
editor = {Marian Gheorghe and
Thomas Hinze and
Gheorghe Paun and
Grzegorz Rozenberg and
Arto Salomaa},
title = {Modelling Spatial Heterogeneity and Macromolecular Crowding with Membrane
Systems},
booktitle = {Membrane Computing - 11th International Conference, {CMC} 2010, Jena,
Germany, August 24-27, 2010. Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {6501},
pages = {285--304},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-18123-8\_23},
doi = {10.1007/978-3-642-18123-8\_23},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/membrane/MoscaCPMM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/corr/abs-1008-3304,
author = {Daniela Besozzi and
Paolo Cazzaniga and
Dario Pescini and
Giancarlo Mauri},
editor = {Paolo Milazzo and
Mario de J. P{\'{e}}rez{-}Jim{\'{e}}nez},
title = {An Analysis on the Influence of Network Topologies on Local and Global
Dynamics of Metapopulation Systems},
booktitle = {Proceedings First Workshop on Applications of Membrane computing,
Concurrency and Agent-based modelling in POPulation biology, {AMCA-POP}
2010, Jena, Germany, 25th August 2010},
series = {{EPTCS}},
volume = {33},
pages = {1--17},
year = {2010},
url = {https://doi.org/10.4204/EPTCS.33.1},
doi = {10.4204/EPTCS.33.1},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1008-3304.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mscs/BesozziBCFLMPZ09,
author = {Daniela Besozzi and
Nadia Busi and
Paolo Cazzaniga and
Claudio Ferretti and
Alberto Leporati and
Giancarlo Mauri and
Dario Pescini and
Claudio Zandron},
title = {(Tissue) {P} systems with cell polarity},
journal = {Math. Struct. Comput. Sci.},
volume = {19},
number = {6},
pages = {1141--1160},
year = {2009},
url = {https://doi.org/10.1017/S0960129509990156},
doi = {10.1017/S0960129509990156},
timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/mscs/BesozziBCFLMPZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/birthday/BesozziCPM09,
author = {Daniela Besozzi and
Paolo Cazzaniga and
Dario Pescini and
Giancarlo Mauri},
editor = {Anne Condon and
David Harel and
Joost N. Kok and
Arto Salomaa and
Erik Winfree},
title = {A Multi-volume Approach to Stochastic Modeling with Membrane Systems},
booktitle = {Algorithmic Bioprocesses},
series = {Natural Computing Series},
pages = {519--542},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-540-88869-7\_26},
doi = {10.1007/978-3-540-88869-7\_26},
timestamp = {Sun, 25 Jul 2021 11:52:09 +0200},
biburl = {https://dblp.org/rec/conf/birthday/BesozziCPM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/evoW/BesozziCMPV09,
author = {Daniela Besozzi and
Paolo Cazzaniga and
Giancarlo Mauri and
Dario Pescini and
Leonardo Vanneschi},
editor = {Clara Pizzuti and
Marylyn D. Ritchie and
Mario Giacobini},
title = {A Comparison of Genetic Algorithms and Particle Swarm Optimization
for Parameter Estimation in Stochastic Biochemical Systems},
booktitle = {Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics,
7th European Conference, EvoBIO 2009, T{\"{u}}bingen, Germany,
April 15-17, 2009, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5483},
pages = {116--127},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-01184-9\_11},
doi = {10.1007/978-3-642-01184-9\_11},
timestamp = {Tue, 14 May 2019 10:00:37 +0200},
biburl = {https://dblp.org/rec/conf/evoW/BesozziCMPV09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/membrane/CazzanigaMMMP09,
author = {Paolo Cazzaniga and
Giancarlo Mauri and
Luciano Milanesi and
Ettore Mosca and
Dario Pescini},
editor = {Gheorghe Paun and
Mario J. P{\'{e}}rez{-}Jim{\'{e}}nez and
Agustin Riscos{-}N{\'{u}}{\~{n}}ez and
Grzegorz Rozenberg and
Arto Salomaa},
title = {A Novel Variant of {P} Systems for the Modelling and Simulation of
Biochemical Systems},
booktitle = {Membrane Computing, 10th International Workshop, {WMC} 2009, Curtea
de Arges, Romania, August 24-27, 2009. Revised Selected and Invited
Papers},
series = {Lecture Notes in Computer Science},
volume = {5957},
pages = {210--226},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-11467-0\_16},
doi = {10.1007/978-3-642-11467-0\_16},
timestamp = {Tue, 14 May 2019 10:00:48 +0200},
biburl = {https://dblp.org/rec/conf/membrane/CazzanigaMMMP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/corr/abs-0910-1415,
author = {Daniela Besozzi and
Paolo Cazzaniga and
Matteo Dugo and
Dario Pescini and
Giancarlo Mauri},
editor = {Ralph{-}Johan Back and
Ion Petre and
Erik P. de Vink},
title = {A study on the combined interplay between stochastic fluctuations
and the number of flagella in bacterial chemotaxis},
booktitle = {Proceedings Second International Workshop on Computational Models
for Cell Processes, {COMPMOD} 2009, Eindhoven, the Netherlands, November
3, 2009},
series = {{EPTCS}},
volume = {6},
pages = {47--62},
year = {2009},
url = {https://doi.org/10.4204/EPTCS.6.4},
doi = {10.4204/EPTCS.6.4},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-0910-1415.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biosystems/BesozziCPM08,
author = {Daniela Besozzi and
Paolo Cazzaniga and
Dario Pescini and
Giancarlo Mauri},
title = {Modelling metapopulations with stochastic membrane systems},
journal = {Biosyst.},
volume = {91},
number = {3},
pages = {499--514},
year = {2008},
url = {https://doi.org/10.1016/j.biosystems.2006.12.011},
doi = {10.1016/J.BIOSYSTEMS.2006.12.011},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biosystems/BesozziCPM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/membrane/PesciniCFM08,
author = {Dario Pescini and
Paolo Cazzaniga and
Claudio Ferretti and
Giancarlo Mauri},
editor = {David W. Corne and
Pierluigi Frisco and
Gheorghe Paun and
Grzegorz Rozenberg and
Arto Salomaa},
title = {First Steps Towards a Wet Implementation for t-DPP},
booktitle = {Membrane Computing - 9th International Workshop, {WMC} 2008, Edinburgh,
UK, July 28-31, 2008, Revised Selected and Invited Papers},
series = {Lecture Notes in Computer Science},
volume = {5391},
pages = {355--373},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-95885-7\_25},
doi = {10.1007/978-3-540-95885-7\_25},
timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/membrane/PesciniCFM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/MuskulusBBCHPR07,
author = {Michael Muskulus and
Daniela Besozzi and
Robert Brijder and
Paolo Cazzaniga and
Sanne Houweling and
Dario Pescini and
Grzegorz Rozenberg},
title = {Cycles and communicating classes in membrane systems and molecular
dynamics},
journal = {Theor. Comput. Sci.},
volume = {372},
number = {2-3},
pages = {242--266},
year = {2007},
url = {https://doi.org/10.1016/j.tcs.2006.11.027},
doi = {10.1016/J.TCS.2006.11.027},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/MuskulusBBCHPR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/membrane/CazzanigaPBM06,
author = {Paolo Cazzaniga and
Dario Pescini and
Daniela Besozzi and
Giancarlo Mauri},
editor = {Hendrik Jan Hoogeboom and
Gheorghe Paun and
Grzegorz Rozenberg and
Arto Salomaa},
title = {Tau Leaping Stochastic Simulation Method in {P} Systems},
booktitle = {Membrane Computing, 7th International Workshop, {WMC} 2006, Leiden,
The Netherlands, July 17-21, 2006, Revised, Selected, and Invited
Papers},
series = {Lecture Notes in Computer Science},
volume = {4361},
pages = {298--313},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11963516\_19},
doi = {10.1007/11963516\_19},
timestamp = {Tue, 14 May 2019 10:00:48 +0200},
biburl = {https://dblp.org/rec/conf/membrane/CazzanigaPBM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/membrane/CazzanigaLMZ05,
author = {Paolo Cazzaniga and
Alberto Leporati and
Giancarlo Mauri and
Claudio Zandron},
editor = {Rudolf Freund and
Gheorghe Paun and
Grzegorz Rozenberg and
Arto Salomaa},
title = {P Systems with Memory},
booktitle = {Membrane Computing, 6th International Workshop, {WMC} 2005, Vienna,
Austria, July 18-21, 2005, Revised Selected and Invited Papers},
series = {Lecture Notes in Computer Science},
volume = {3850},
pages = {165--180},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11603047\_12},
doi = {10.1007/11603047\_12},
timestamp = {Tue, 14 May 2019 10:00:47 +0200},
biburl = {https://dblp.org/rec/conf/membrane/CazzanigaLMZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
a service of 
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
last updated on 2024-04-21 18:05 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
