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ORCIDBibTeX records: Tony Burdett
@article{DBLP:journals/nar/BurginACDGGGHIIJkKLLMMOPPRRSSVWWYZB23,
author = {Josephine Burgin and
Alisha Ahamed and
Carla A. Cummins and
Rajkumar Devraj and
Khadim Gueye and
Dipayan Gupta and
Vikas Gupta and
Muhammad Haseeb and
Maira Ihsan and
Eugene Ivanov and
Suran Jayathilaka and
Vishnukumar Balavenkataraman Kadhirvelu and
Manish Kumar and
Ankur Lathi and
Rasko Leinonen and
Milena Mansurova and
Jasmine McKinnon and
Colman O'Cathail and
Joana Paup{\'{e}}rio and
Stephane Pesant and
Nadim Rahman and
Gabriele Rinck and
Sandeep Selvakumar and
Swati Suman and
Senthilnathan Vijayaraja and
Zahra Waheed and
Peter Woollard and
David Yuan and
Ahmad Zyoud and
Tony Burdett and
Guy Cochrane},
title = {The European Nucleotide Archive in 2022},
journal = {Nucleic Acids Res.},
volume = {51},
number = {{D1}},
pages = {121--125},
year = {2023},
url = {https://doi.org/10.1093/nar/gkac1051},
doi = {10.1093/NAR/GKAC1051},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BurginACDGGGHIIJkKLLMMOPPRRSSVWWYZB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RichardsonABBBBBCCCCEGKKRRSSWF23,
author = {Lorna J. Richardson and
Ben Allen and
Germana Baldi and
Martin Beracochea and
Maxwell L. Bileschi and
Tony Burdett and
Josephine Burgin and
Juan Caballero and
Guy Cochrane and
Lucy J. Colwell and
Tom Curtis and
Alejandra Escobar{-}Zepeda and
Tatiana A. Gurbich and
Varsha Kale and
Anton I. Korobeynikov and
Shriya Raj and
Alexander B. Rogers and
Ekaterina A. Sakharova and
Santiago Sanchez and
Darren J. Wilkinson and
Robert D. Finn},
title = {MGnify: the microbiome sequence data analysis resource in 2023},
journal = {Nucleic Acids Res.},
volume = {51},
number = {{D1}},
pages = {753--759},
year = {2023},
url = {https://doi.org/10.1093/nar/gkac1080},
doi = {10.1093/NAR/GKAC1080},
timestamp = {Tue, 05 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/RichardsonABBBBBCCCCEGKKRRSSWF23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiyanageBDEFGHJ22,
author = {Isuru Udara Liyanage and
Tony Burdett and
Bert Droesbeke and
Karoly Erdos and
Rolando Fernandez and
Alasdair J. G. Gray and
Muhammad Haseeb and
Simon Jupp and
Flavia Penim and
Cyril Pommier and
Philippe Rocca{-}Serra and
M{\'{e}}lanie Courtot and
Frederik Coppens},
title = {{ELIXIR} biovalidator for semantic validation of life science metadata},
journal = {Bioinform.},
volume = {38},
number = {11},
pages = {3141--3142},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btac195},
doi = {10.1093/BIOINFORMATICS/BTAC195},
timestamp = {Wed, 27 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiyanageBDEFGHJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CumminsAABDEGHH22,
author = {Carla A. Cummins and
Alisha Ahamed and
Raheela Aslam and
Josephine Burgin and
Rajkumar Devraj and
Ossama Edbali and
Dipayan Gupta and
Peter W. Harrison and
Muhammad Haseeb and
Sam Holt and
Talal Ibrahim and
Eugene Ivanov and
Suran Jayathilaka and
Vishnukumar Balavenkataraman Kadhirvelu and
Simon Kay and
Manish Kumar and
Ankur Lathi and
Rasko Leinonen and
F{\'{a}}bio Madeira and
Nandana Madhusoodanan and
Milena Mansurova and
Colman O'Cathail and
Matt Pearce and
Stephane Pesant and
Nadim Rahman and
Jeena Rajan and
Gabriele Rinck and
Sandeep Selvakumar and
Alexey Sokolov and
Swati Suman and
Ross Thorne and
Prabhat Totoo and
Senthilnathan Vijayaraja and
Zahra Waheed and
Ahmad Zyoud and
Rodrigo Lopez and
Tony Burdett and
Guy Cochrane},
title = {The European Nucleotide Archive in 2021},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {106--110},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab1051},
doi = {10.1093/NAR/GKAB1051},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CumminsAABDEGHH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MorenoFGMMMFFBB22,
author = {Pablo A. Moreno and
Silvie Fexova and
Nancy George and
Jonathan R. Manning and
Zhichao Miao and
Suhaib Mohammed and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Anja F{\"{u}}llgrabe and
Yalan Bi and
Natassja Bush and
Haider Iqbal and
Upendra Kumbham and
Andrey Solovyev and
Lingyun Zhao and
Ananth Prakash and
David Garc{\'{\i}}a{-}Seisdedos and
Deepti Jaiswal Kundu and
Shengbo Wang and
Mathias Walzer and
Laura Clarke and
David Osumi{-}Sutherland and
Marcela Karey Tello{-}Ruiz and
Sunita Kumari and
Doreen Ware and
Jana Eliasova and
Mark J. Arends and
Martijn C. Nawijn and
Kerstin B. Meyer and
Tony Burdett and
John C. Marioni and
Sarah A. Teichmann and
Juan Antonio Vizca{\'{\i}}no and
Alvis Brazma and
Irene Papatheodorou},
title = {Expression Atlas update: gene and protein expression in multiple species},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {129--140},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab1030},
doi = {10.1093/NAR/GKAB1030},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MorenoFGMMMFFBB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CourtotGLXB22,
author = {M{\'{e}}lanie Courtot and
Dipayan Gupta and
Isuru Udara Liyanage and
Fuqi Xu and
Tony Burdett},
title = {BioSamples database: FAIRer samples metadata to accelerate research
data management},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {1500--1507},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab1046},
doi = {10.1093/NAR/GKAB1046},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CourtotGLXB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GhoussainiMCPSH21,
author = {Maya Ghoussaini and
Edward Mountjoy and
Miguel Carmona and
Gareth Peat and
Ellen M. Schmidt and
Andrew Hercules and
Luca Fumis and
Alfredo Miranda and
Denise Carvalho{-}Silva and
Annalisa Buniello and
Tony Burdett and
James D. Hayhurst and
Jarrod Baker and
Javier Ferrer and
Asier Gonzalez{-}Uriarte and
Simon Jupp and
Mohd Anisul Karim and
Gautier Koscielny and
Sandra Machlitt{-}Northen and
Cinzia Malangone and
Zo{\"{e}} May Pendlington and
Paola Roncaglia and
Daniel Suveges and
Daniel Wright and
Olga Vrousgou and
Eliseo Papa and
Helen E. Parkinson and
Jacqueline A. L. MacArthur and
John A. Todd and
Jeffrey C. Barrett and
Jeremy Schwartzentruber and
David G. Hulcoop and
David Ochoa and
Ellen M. McDonagh and
Ian Dunham},
title = {Open Targets Genetics: systematic identification of trait-associated
genes using large-scale genetics and functional genomics},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D1311--D1320},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa840},
doi = {10.1093/NAR/GKAA840},
timestamp = {Wed, 06 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/GhoussainiMCPSH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HarrisonAAABBCF21,
author = {Peter W. Harrison and
Alisha Ahamed and
Raheela Aslam and
Blaise T. F. Alako and
Josephine Burgin and
Nicola Buso and
M{\'{e}}lanie Courtot and
Jun Fan and
Dipayan Gupta and
Muhammad Haseeb and
Sam Holt and
Talal Ibrahim and
Eugene Ivanov and
Suran Jayathilaka and
Vishnukumar Balavenkataraman Kadhirvelu and
Manish Kumar and
Rodrigo Lopez and
Simon Kay and
Rasko Leinonen and
Xin Liu and
Colman O'Cathail and
Amir Pakseresht and
Young Mi Park and
Stephane Pesant and
Nadim Rahman and
Jeena Rajan and
Alexey Sokolov and
Senthilnathan Vijayaraja and
Zahra Waheed and
Ahmad Zyoud and
Tony Burdett and
Guy Cochrane},
title = {The European Nucleotide Archive in 2020},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D82--D85},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa1028},
doi = {10.1093/NAR/GKAA1028},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/HarrisonAAABBCF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AmidAKBBFHHHIJK20,
author = {Clara Amid and
Blaise T. F. Alako and
Vishnukumar Balavenkataraman Kadhirvelu and
Tony Burdett and
Josephine Burgin and
Jun Fan and
Peter W. Harrison and
Sam Holt and
Abdulrahman Hussein and
Eugene Ivanov and
Suran Jayathilaka and
Simon Kay and
Thomas M. Keane and
Rasko Leinonen and
Xin Liu and
Josu{\'{e}} Mart{\'{\i}}nez{-}Villacorta and
Annalisa Milano and
Amir Pakseresht and
Nadim Rahman and
Jeena Rajan and
Kethi Reddy and
Edward Richards and
Dmitriy Smirnov and
Alexey Sokolov and
Senthilnathan Vijayaraja and
Guy Cochrane},
title = {The European Nucleotide Archive in 2019},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D70--D76},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz1063},
doi = {10.1093/NAR/GKZ1063},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/AmidAKBBFHHHIJK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BunielloMCHHMMM19,
author = {Annalisa Buniello and
Jacqueline A. L. MacArthur and
Maria Cerezo and
Laura W. Harris and
James D. Hayhurst and
Cinzia Malangone and
Aoife McMahon and
Joannella Morales and
Edward Mountjoy and
Elliot Sollis and
Daniel Suveges and
Olga Vrousgou and
Patricia L. Whetzel and
M. Ridwan Amode and
Jose A. Guillen and
Harpreet Singh Riat and
Stephen J. Trevanion and
Peggy Hall and
Heather Junkins and
Paul Flicek and
Tony Burdett and
Lucia A. Hindorff and
Fiona Cunningham and
Helen E. Parkinson},
title = {The {NHGRI-EBI} {GWAS} Catalog of published genome-wide association
studies, targeted arrays and summary statistics 2019},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Database-Issue},
pages = {D1005--D1012},
year = {2019},
url = {https://doi.org/10.1093/nar/gky1120},
doi = {10.1093/NAR/GKY1120},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BunielloMCHHMMM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CourtotCFVGRHWP19,
author = {M{\'{e}}lanie Courtot and
Luca Cherubin and
Adam Faulconbridge and
Daniel Vaughan and
Matthew Green and
David Richardson and
Peter W. Harrison and
Patricia L. Whetzel and
Helen E. Parkinson and
Tony Burdett},
title = {BioSamples database: an updated sample metadata hub},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Database-Issue},
pages = {D1172--D1178},
year = {2019},
url = {https://doi.org/10.1093/nar/gky1061},
doi = {10.1093/NAR/GKY1061},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CourtotCFVGRHWP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MacArthurBCGHHJ17,
author = {Jacqueline A. L. MacArthur and
Emily Bowler and
Maria Cerezo and
Laurent Gil and
Peggy Hall and
Emma Hastings and
Heather Junkins and
Aoife McMahon and
Annalisa Milano and
Joannella Morales and
Zo{\"{e}} May Pendlington and
Danielle Welter and
Tony Burdett and
Lucia Hindorff and
Paul Flicek and
Fiona Cunningham and
Helen E. Parkinson},
title = {The new {NHGRI-EBI} Catalog of published genome-wide association studies
{(GWAS} Catalog)},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D896--D901},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1133},
doi = {10.1093/NAR/GKW1133},
timestamp = {Mon, 26 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MacArthurBCGHHJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KoscielnyACCFGH17,
author = {Gautier Koscielny and
Peter An and
Denise Carvalho{-}Silva and
Jennifer A. Cham and
Luca Fumis and
Rippa Gasparyan and
Samiul Hasan and
Nikiforos Karamanis and
Michael Maguire and
Eliseo Papa and
Andrea Pierleoni and
Miguel Pignatelli and
Theo Platt and
Francis Rowland and
Priyanka Wankar and
A. Patr{\'{\i}}cia Bento and
Tony Burdett and
Antonio Fabregat and
Simon A. Forbes and
Anna Gaulton and
Cristina Yenyxe Gonz{\'{a}}lez and
Henning Hermjakob and
Anne Hersey and
Steven Jupe and
Senay Kafkas and
Maria Keays and
Catherine Leroy and
Francisco{-}Javier Lopez and
Mar{\'{\i}}a P. Magari{\~{n}}os and
James Malone and
Johanna R. McEntyre and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Claire O'Donovan and
Irene Papatheodorou and
Helen E. Parkinson and
Barbara Palka and
Justin E. Paschall and
Robert Petryszak and
Naruemon Pratanwanich and
Sirarat Sarntivijai and
Gary Saunders and
Konstantinos Sidiropoulos and
Thomas Smith and
Zbyslaw Sondka and
Oliver Stegle and
Y. Amy Tang and
Edward Turner and
Brendan W. Vaughan and
Olga Vrousgou and
Xavier Watkins and
Maria Jesus Martin and
Philippe Sanseau and
Jessica Vamathevan and
Ewan Birney and
Jeffrey Barrett and
Ian Dunham},
title = {Open Targets: a platform for therapeutic target identification and
validation},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D985--D994},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1055},
doi = {10.1093/NAR/GKW1055},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KoscielnyACCFGH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/JuppLSVBP17,
author = {Simon Jupp and
Thomas Liener and
Sirarat Sarntivijai and
Olga Vrousgou and
Tony Burdett and
Helen E. Parkinson},
editor = {Matthew Horridge and
Phillip Lord and
Jennifer D. Warrender},
title = {OxO - {A} Gravy of Ontology Mapping Extracts},
booktitle = {Proceedings of the 8th International Conference on Biomedical Ontology
{(ICBO} 2017), Newcastle-upon-Tyne, United Kingdom, September 13th
- 15th, 2017},
series = {{CEUR} Workshop Proceedings},
volume = {2137},
publisher = {CEUR-WS.org},
year = {2017},
url = {https://ceur-ws.org/Vol-2137/paper\_27.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:24 +0100},
biburl = {https://dblp.org/rec/conf/icbo/JuppLSVBP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/JuppBWSPM16,
author = {Simon Jupp and
Tony Burdett and
Danielle Welter and
Sirarat Sarntivijai and
Helen E. Parkinson and
James Malone},
title = {Webulous and the Webulous Google Add-On - a web service and application
for ontology building from templates},
journal = {J. Biomed. Semant.},
volume = {7},
pages = {17},
year = {2016},
url = {https://doi.org/10.1186/s13326-016-0055-3},
doi = {10.1186/S13326-016-0055-3},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/JuppBWSPM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/JuppMBHWEPR16,
author = {Simon Jupp and
James Malone and
Tony Burdett and
Jean{-}Karim H{\'{e}}rich{\'{e}} and
Eleanor Williams and
Jan Ellenberg and
Helen E. Parkinson and
Gabriella Rustici},
title = {The cellular microscopy phenotype ontology},
journal = {J. Biomed. Semant.},
volume = {7},
pages = {28},
year = {2016},
url = {https://doi.org/10.1186/s13326-016-0074-0},
doi = {10.1186/S13326-016-0074-0},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/JuppMBHWEPR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/AdebayoMTOBBBP16,
author = {Solomon Adebayo and
Kenneth McLeod and
Ilinca Tudose and
David Osumi{-}Sutherland and
Tony Burdett and
Richard A. Baldock and
Albert Burger and
Helen E. Parkinson},
title = {PhenoImageShare: an image annotation and query infrastructure},
journal = {J. Biomed. Semant.},
volume = {7},
pages = {35},
year = {2016},
url = {https://doi.org/10.1186/s13326-016-0072-2},
doi = {10.1186/S13326-016-0072-2},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/AdebayoMTOBBBP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PetryszakKTFBBF16,
author = {Robert Petryszak and
Maria Keays and
Y. Amy Tang and
Nuno A. Fonseca and
Elisabet Barrera and
Tony Burdett and
Anja F{\"{u}}llgrabe and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Simon Jupp and
Satu Koskinen and
Oliver Mannion and
Laura Huerta and
Karine Megy and
Catherine Snow and
Eleanor Williams and
Mitra Barzine and
Emma Hastings and
Hendrik Weisser and
James C. Wright and
Pankaj Jaiswal and
Wolfgang Huber and
Jyoti Choudhary and
Helen E. Parkinson and
Alvis Brazma},
title = {Expression Atlas update - an integrated database of gene and protein
expression in humans, animals and plants},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {746--752},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1045},
doi = {10.1093/NAR/GKV1045},
timestamp = {Tue, 26 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PetryszakKTFBBF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/edbt/VrousgouBPJ16,
author = {Olga Vrousgou and
Tony Burdett and
Helen E. Parkinson and
Simon Jupp},
editor = {Themis Palpanas and
Kostas Stefanidis},
title = {Biomedical Ontology Evolution in the {EMBL-EBI} Ontology Lookup Service},
booktitle = {Proceedings of the Workshops of the {EDBT/ICDT} 2016 Joint Conference,
{EDBT/ICDT} Workshops 2016, Bordeaux, France, March 15, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1558},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1558/paper12.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:44 +0100},
biburl = {https://dblp.org/rec/conf/edbt/VrousgouBPJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/LienerBJ16,
author = {Thomas Liener and
Tony Burdett and
Simon Jupp},
editor = {Adrian Paschke and
Albert Burger and
Andrea Splendiani and
M. Scott Marshall and
Paolo Romano},
title = {Updates from the {EMBL-EBI} {RDF} platform},
booktitle = {Proceedings of the 9th International Conference Semantic Web Applications
and Tools for Life Sciences, Amsterdam, The Netherlands, December
5-8, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1795},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1795/paper39.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:02 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/LienerBJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KolesnikovHKMTWDKBBMPRTPPSB15,
author = {Nikolay Kolesnikov and
Emma Hastings and
Maria Keays and
Olga Melnichuk and
Y. Amy Tang and
Eleanor Williams and
Miroslaw Dylag and
Natalja Kurbatova and
Marco Brandizi and
Tony Burdett and
Karyn Megy and
Ekaterina Pilicheva and
Gabriella Rustici and
Andrew Tikhonov and
Helen E. Parkinson and
Robert Petryszak and
Ugis Sarkans and
Alvis Brazma},
title = {ArrayExpress update - simplifying data submissions},
journal = {Nucleic Acids Res.},
volume = {43},
number = {Database-Issue},
pages = {1113--1116},
year = {2015},
url = {https://doi.org/10.1093/nar/gku1057},
doi = {10.1093/NAR/GKU1057},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KolesnikovHKMTWDKBBMPRTPPSB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/JuppBLP15,
author = {Simon Jupp and
Tony Burdett and
Catherine Leroy and
Helen E. Parkinson},
editor = {James Malone and
Robert Stevens and
Kerstin Forsberg and
Andrea Splendiani},
title = {A new Ontology Lookup Service at {EMBL-EBI}},
booktitle = {Proceedings of the 8th Semantic Web Applications and Tools for Life
Sciences International Conference, Cambridge UK, December 7-10, 2015},
series = {{CEUR} Workshop Proceedings},
volume = {1546},
pages = {118--119},
publisher = {CEUR-WS.org},
year = {2015},
url = {https://ceur-ws.org/Vol-1546/paper\_29.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:03 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/JuppBLP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/JuppWBPM15,
author = {Simon Jupp and
Danielle Welter and
Tony Burdett and
Helen E. Parkinson and
James Malone},
editor = {James Malone and
Robert Stevens and
Kerstin Forsberg and
Andrea Splendiani},
title = {Collaborative Ontology Development Using the Webulous Architecture
and Google App},
booktitle = {Proceedings of the 8th Semantic Web Applications and Tools for Life
Sciences International Conference, Cambridge UK, December 7-10, 2015},
series = {{CEUR} Workshop Proceedings},
volume = {1546},
pages = {120--121},
publisher = {CEUR-WS.org},
year = {2015},
url = {https://ceur-ws.org/Vol-1546/paper\_32.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/JuppWBPM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FaulconbridgeBBGPVSBP14,
author = {Adam Faulconbridge and
Tony Burdett and
Marco Brandizi and
Mikhail Gostev and
Rui Pedro Pereira and
Drashtti Vasant and
Ugis Sarkans and
Alvis Brazma and
Helen E. Parkinson},
title = {Updates to BioSamples database at European Bioinformatics Institute},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {50--52},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1081},
doi = {10.1093/NAR/GKT1081},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FaulconbridgeBBGPVSBP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PetryszakBFFGHHJKKMMMMRTTWMPB14,
author = {Robert Petryszak and
Tony Burdett and
Benedetto Fiorelli and
Nuno A. Fonseca and
Mar Gonzalez{-}Porta and
Emma Hastings and
Wolfgang Huber and
Simon Jupp and
Maria Keays and
Nataliya Kryvych and
Julie A. McMurry and
John C. Marioni and
James Malone and
Karine Megy and
Gabriella Rustici and
Y. Amy Tang and
Jan Taubert and
Eleanor Williams and
Oliver Mannion and
Helen E. Parkinson and
Alvis Brazma},
title = {Expression Atlas update - a database of gene and transcript expression
from microarray- and sequencing-based functional genomics experiments},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {926--932},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1270},
doi = {10.1093/NAR/GKT1270},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PetryszakBFFGHHJKKMMMMRTTWMPB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WelterMMBHJKFMHP14,
author = {Danielle Welter and
Jacqueline A. L. MacArthur and
Joannella Morales and
Tony Burdett and
Peggy Hall and
Heather Junkins and
Alan Klemm and
Paul Flicek and
Teri Manolio and
Lucia Hindorff and
Helen E. Parkinson},
title = {The {NHGRI} {GWAS} Catalog, a curated resource of SNP-trait associations},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {1001--1006},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1229},
doi = {10.1093/NAR/GKT1229},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WelterMMBHJKFMHP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RusticiKBBDEFHIKKMMMPPRSTTTWWBPS13,
author = {Gabriella Rustici and
Nikolay Kolesnikov and
Marco Brandizi and
Tony Burdett and
Miroslaw Dylag and
Ibrahim Emam and
Anna Farne and
Emma Hastings and
Jon C. Ison and
Maria Keays and
Natalja Kurbatova and
James Malone and
Roby Mani and
Annalisa Mupo and
Rui Pedro Pereira and
Ekaterina Pilicheva and
Johan Rung and
Anjan Sharma and
Y. Amy Tang and
Tobias Ternent and
Andrew Tikhonov and
Danielle Welter and
Eleanor Williams and
Alvis Brazma and
Helen E. Parkinson and
Ugis Sarkans},
title = {ArrayExpress update - trends in database growth and links to data
analysis tools},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {987--990},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1174},
doi = {10.1093/NAR/GKS1174},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RusticiKBBDEFHIKKMMMPPRSTTTWWBPS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/owled/MaloneBIJVWP13,
author = {James Malone and
Tony Burdett and
Jon C. Ison and
Simon Jupp and
Drashtti Vasant and
Danielle Welter and
Helen E. Parkinson},
editor = {Mariano Rodriguez{-}Muro and
Simon Jupp and
Kavitha Srinivas},
title = {Putting {OWL} into Production at the European Bioinformatics Institute},
booktitle = {Proceedings of the 10th International Workshop on {OWL:} Experiences
and Directions {(OWLED} 2013) co-located with 10th Extended Semantic
Web Conference {(ESWC} 2013), Montpellier, France, May 26-27, 2013},
series = {{CEUR} Workshop Proceedings},
volume = {1080},
publisher = {CEUR-WS.org},
year = {2013},
url = {https://ceur-ws.org/Vol-1080/owled2013\_5.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:02 +0100},
biburl = {https://dblp.org/rec/conf/owled/MaloneBIJVWP13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/XueBLTBP12,
author = {Vincent Xue and
Tony Burdett and
Margus Lukk and
Julie Taylor and
Alvis Brazma and
Helen E. Parkinson},
title = {MageComet - web application for harmonizing existing large-scale experiment
descriptions},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1402--1403},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts148},
doi = {10.1093/BIOINFORMATICS/BTS148},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/XueBLTBP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KapusheskyABCFFHKKKKMMPPRTTWZPB12,
author = {Misha Kapushesky and
Tomasz Adamusiak and
Tony Burdett and
Aed{\'{\i}}n C. Culhane and
Anna Farne and
Alexey Filippov and
Ele Holloway and
Andrey Klebanov and
Nataliya Kryvych and
Natalja Kurbatova and
Pavel Kurnosov and
James Malone and
Olga Melnichuk and
Robert Petryszak and
Nikolay Pultsin and
Gabriella Rustici and
Andrew Tikhonov and
Ravensara S. Travillian and
Eleanor Williams and
Andrey Zorin and
Helen E. Parkinson and
Alvis Brazma},
title = {Gene Expression Atlas update - a value-added database of microarray
and sequencing-based functional genomics experiments},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {1077--1081},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr913},
doi = {10.1093/NAR/GKR913},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KapusheskyABCFFHKKKKMMPPRTTWZPB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/WelterBHJMP12,
author = {Danielle Welter and
Tony Burdett and
Lucia Hindorff and
Heather Junkins and
Jackie MacArthur and
Helen E. Parkinson},
editor = {Ronald Cornet and
Robert Stevens},
title = {{GOCI:} An Ontology-Driven Search and Curation Infrastructure for
the {NHGRI} {GWAS} Catalog},
booktitle = {Proceedings of the 3rd International Conference on Biomedical Ontology
{(ICBO} 2012), {KR-MED} Series, Graz, Austria, July 21-25, 2012},
series = {{CEUR} Workshop Proceedings},
volume = {897},
publisher = {CEUR-WS.org},
year = {2012},
url = {https://ceur-ws.org/Vol-897/poster\_9.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:23 +0100},
biburl = {https://dblp.org/rec/conf/icbo/WelterBHJMP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/TravillianABGHMMSP11,
author = {Ravensara S. Travillian and
Tomasz Adamusiak and
Tony Burdett and
Michael Gruenberger and
John M. Hancock and
Ann{-}Marie Mallon and
James Malone and
Paul N. Schofield and
Helen E. Parkinson},
title = {Anatomy ontologies and potential users: bridging the gap},
journal = {J. Biomed. Semant.},
volume = {2},
number = {{S-4}},
pages = {S3},
year = {2011},
url = {http://www.jbiomedsem.com/content/2/S4/S3},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/TravillianABGHMMSP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AdamusiakBKVAAKPS11,
author = {Tomasz Adamusiak and
Tony Burdett and
Natalja Kurbatova and
K. Joeri van der Velde and
Niran Abeygunawardena and
Despoina Antonakaki and
Misha Kapushesky and
Helen E. Parkinson and
Morris A. Swertz},
title = {OntoCAT - simple ontology search and integration in Java, {R} and
REST/JavaScript},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {218},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-218},
doi = {10.1186/1471-2105-12-218},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AdamusiakBKVAAKPS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ParkinsonSKABDEFHHKLMMPRSWABSB11,
author = {Helen E. Parkinson and
Ugis Sarkans and
Nikolay Kolesnikov and
Niran Abeygunawardena and
Tony Burdett and
Miroslaw Dylag and
Ibrahim Emam and
Anna Farne and
Emma Hastings and
Ele Holloway and
Natalja Kurbatova and
Margus Lukk and
James Malone and
Roby Mani and
Ekaterina Pilicheva and
Gabriella Rustici and
Anjan Sharma and
Eleanor Williams and
Tomasz Adamusiak and
Marco Brandizi and
Nataliya Sklyar and
Alvis Brazma},
title = {ArrayExpress update - an archive of microarray and high-throughput
sequencing-based functional genomics experiments},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {1002--1004},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1040},
doi = {10.1093/NAR/GKQ1040},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ParkinsonSKABDEFHHKLMMPRSWABSB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShankarPBHLMSWBSSB10,
author = {Ravi Shankar and
Helen E. Parkinson and
Tony Burdett and
Emma Hastings and
Junmin Liu and
Michael Miller and
Rashmi Srinivasa and
Joseph White and
Alvis Brazma and
Gavin Sherlock and
Christian J. Stoeckert Jr. and
Catherine A. Ball},
title = {Annotare - a tool for annotating high-throughput biomedical investigations
and resulting data},
journal = {Bioinform.},
volume = {26},
number = {19},
pages = {2470--2471},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq462},
doi = {10.1093/BIOINFORMATICS/BTQ462},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShankarPBHLMSWBSSB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ParkinsonKKRSABDEFHLMMPRRSWBABBCKKMNRSSZSB09,
author = {Helen E. Parkinson and
Misha Kapushesky and
Nikolay Kolesnikov and
Gabriella Rustici and
Mohammadreza Shojatalab and
Niran Abeygunawardena and
Hugo B{\'{e}}rub{\'{e}} and
Miroslaw Dylag and
Ibrahim Emam and
Anna Farne and
Ele Holloway and
Margus Lukk and
James Malone and
Roby Mani and
Ekaterina Pilicheva and
Tim F. Rayner and
Faisal Ibne Rezwan and
Anjan Sharma and
Eleanor Williams and
Xiangqun Zheng Bradley and
Tomasz Adamusiak and
Marco Brandizi and
Tony Burdett and
Richard Coulson and
Maria Krestyaninova and
Pavel Kurnosov and
Eamonn Maguire and
Sudeshna Guha Neogi and
Philippe Rocca{-}Serra and
Susanna{-}Assunta Sansone and
Nataliya Sklyar and
Mengyao Zhao and
Ugis Sarkans and
Alvis Brazma},
title = {ArrayExpress update - from an archive of functional genomics experiments
to the atlas of gene expression},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Database-Issue},
pages = {868--872},
year = {2009},
url = {https://doi.org/10.1093/nar/gkn889},
doi = {10.1093/NAR/GKN889},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ParkinsonKKRSABDEFHLMMPRRSWBABBCKKMNRSSZSB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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