BibTeX records: Brett K. Beaulieu-Jones

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@article{DBLP:journals/corr/abs-2403-01628,
  author       = {Hyewon Jeong and
                  Sarah Jabbour and
                  Yuzhe Yang and
                  Rahul Thapa and
                  Hussein Mozannar and
                  William Jongwon Han and
                  Nikita Mehandru and
                  Michael Wornow and
                  Vladislav Lialin and
                  Xin Liu and
                  Alejandro Lozano and
                  Jiacheng Zhu and
                  Rafal Dariusz Kocielnik and
                  Keith Harrigian and
                  Haoran Zhang and
                  Edward Lee and
                  Milos Vukadinovic and
                  Aparna Balagopalan and
                  Vincent Jeanselme and
                  Katherine Matton and
                  Ilker Demirel and
                  Jason A. Fries and
                  Parisa Rashidi and
                  Brett K. Beaulieu{-}Jones and
                  Xuhai Orson Xu and
                  Matthew B. A. McDermott and
                  Tristan Naumann and
                  Monica Agrawal and
                  Marinka Zitnik and
                  Berk Ustun and
                  Edward Choi and
                  Kristen Yeom and
                  Gamze Gursoy and
                  Marzyeh Ghassemi and
                  Emma Pierson and
                  George H. Chen and
                  Sanjat Kanjilal and
                  Michael Oberst and
                  Linying Zhang and
                  Harvineet Singh and
                  Tom Hartvigsen and
                  Helen Zhou and
                  Chinasa T. Okolo},
  title        = {Recent Advances, Applications, and Open Challenges in Machine Learning
                  for Health: Reflections from Research Roundtables at {ML4H} 2023 Symposium},
  journal      = {CoRR},
  volume       = {abs/2403.01628},
  year         = {2024},
  url          = {https://doi.org/10.48550/arXiv.2403.01628},
  doi          = {10.48550/ARXIV.2403.01628},
  eprinttype    = {arXiv},
  eprint       = {2403.01628},
  timestamp    = {Tue, 02 Apr 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2403-01628.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/npjdm/AlsentzerRFCBGBK23,
  author       = {Emily Alsentzer and
                  Matthew J. Rasmussen and
                  Romy Fontoura and
                  Alexis L. Cull and
                  Brett K. Beaulieu{-}Jones and
                  Kathryn J. Gray and
                  David W. Bates and
                  Vesela P. Kovacheva},
  title        = {Zero-shot interpretable phenotyping of postpartum hemorrhage using
                  large language models},
  journal      = {npj Digit. Medicine},
  volume       = {6},
  year         = {2023},
  url          = {https://doi.org/10.1038/s41746-023-00957-x},
  doi          = {10.1038/S41746-023-00957-X},
  timestamp    = {Sun, 31 Dec 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/npjdm/AlsentzerRFCBGBK23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jamia/KlannEWMAHTBCMG21,
  author       = {Jeffrey G. Klann and
                  Hossein Estiri and
                  Griffin M. Weber and
                  Bertrand Moal and
                  Paul Avillach and
                  Chuan Hong and
                  Amelia L. M. Tan and
                  Brett K. Beaulieu{-}Jones and
                  Victor M. Castro and
                  Thomas Maulhardt and
                  Alon Geva and
                  Alberto Malovini and
                  Andrew M. South and
                  Shyam Visweswaran and
                  Michele Morris and
                  Malarkodi J. Samayamuthu and
                  Gilbert S. Omenn and
                  Kee Yuan Ngiam and
                  Kenneth D. Mandl and
                  Martin Boeker and
                  Karen L. Olson and
                  Danielle L. Mowery and
                  Robert W. Follett and
                  David A. Hanauer and
                  Riccardo Bellazzi and
                  Jason H. Moore and
                  Ne{-}Hooi Will Loh and
                  Douglas S. Bell and
                  Kavishwar B. Wagholikar and
                  Luca Chiovato and
                  Valentina Tibollo and
                  Siegbert Rieg and
                  Anthony L. L. J. Li and
                  Vianney Jouhet and
                  Emily Schriver and
                  Zongqi Xia and
                  Meghan Hutch and
                  Yuan Luo and
                  Isaac S. Kohane and
                  Gabriel A. Brat and
                  Shawn N. Murphy},
  title        = {Validation of an internationally derived patient severity phenotype
                  to support {COVID-19} analytics from electronic health record data},
  journal      = {J. Am. Medical Informatics Assoc.},
  volume       = {28},
  number       = {7},
  pages        = {1411--1420},
  year         = {2021},
  url          = {https://doi.org/10.1093/jamia/ocab018},
  doi          = {10.1093/JAMIA/OCAB018},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jamia/KlannEWMAHTBCMG21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/npjdm/Beaulieu-JonesY21,
  author       = {Brett K. Beaulieu{-}Jones and
                  William Yuan and
                  Gabriel A. Brat and
                  Andrew L. Beam and
                  Griffin M. Weber and
                  Marshall Ruffin and
                  Isaac S. Kohane},
  title        = {Machine learning for patient risk stratification: standing on, or
                  looking over, the shoulders of clinicians?},
  journal      = {npj Digit. Medicine},
  volume       = {4},
  year         = {2021},
  url          = {https://doi.org/10.1038/s41746-021-00426-3},
  doi          = {10.1038/S41746-021-00426-3},
  timestamp    = {Mon, 01 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/npjdm/Beaulieu-JonesY21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/psb/Beaulieu-JonesD21,
  author       = {Brett K. Beaulieu{-}Jones and
                  Christian Darabos and
                  Dokyoon Kim and
                  Anurag Verma and
                  Shilpa Nadimpalli Kobren},
  title        = {Innovative methodological approaches for data integration to derive
                  patterns across diverse, large-scale biomedical datasets},
  booktitle    = {Biocomputing 2021: Proceedings of the Pacific Symposium, Kohala Coast,
                  Hawaii, USA, January 3-7, 2021},
  publisher    = {WorldScientific},
  year         = {2021},
  url          = {https://doi.org/10.1142/9789811232701\_0024},
  doi          = {10.1142/9789811232701\_0024},
  timestamp    = {Fri, 13 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/psb/Beaulieu-JonesD21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/npjdm/BratWGAPCCWOMMB20,
  author       = {Gabriel A. Brat and
                  Griffin M. Weber and
                  Nils Gehlenborg and
                  Paul Avillach and
                  Nathan P. Palmer and
                  Luca Chiovato and
                  James J. Cimino and
                  Lemuel R. Waitman and
                  Gilbert S. Omenn and
                  Alberto Malovini and
                  Jason H. Moore and
                  Brett K. Beaulieu{-}Jones and
                  Valentina Tibollo and
                  Shawn N. Murphy and
                  Sehi L'Yi and
                  Mark S. Keller and
                  Riccardo Bellazzi and
                  David A. Hanauer and
                  Arnaud Serret{-}Larmande and
                  Alba Guti{\'{e}}rrez{-}Sacrist{\'{a}}n and
                  John J. Holmes and
                  Douglas S. Bell and
                  Kenneth D. Mandl and
                  Robert W. Follett and
                  Jeffrey G. Klann and
                  Douglas A. Murad and
                  Luigia Scudeller and
                  Mauro Bucalo and
                  Katie G. Kirchoff and
                  Jean B. Craig and
                  Jihad S. Obeid and
                  Vianney Jouhet and
                  Romain Griffier and
                  S{\'{e}}bastien Cossin and
                  Bertrand Moal and
                  Lav P. Patel and
                  Antonio Bellasi and
                  Hans{-}Ulrich Prokosch and
                  Detlef Kraska and
                  Piotr Sliz and
                  Amelia L. M. Tan and
                  Kee Yuan Ngiam and
                  Alberto Zambelli and
                  Danielle L. Mowery and
                  Emily Schriver and
                  Batsal Devkota and
                  Robert L. Bradford and
                  Mohamad Daniar and
                  Christel Daniel and
                  Vincent Benoit and
                  Romain Bey and
                  Nicolas Paris and
                  Patricia Serre and
                  Nina Orlova and
                  Julien Dubiel and
                  Martin Hilka and
                  Anne{-}Sophie Jannot and
                  St{\'{e}}phane Br{\'{e}}ant and
                  Judith Leblanc and
                  Nicolas Griffon and
                  Anita Burgun and
                  M{\'{e}}lodie Bernaux and
                  Arnaud Sandrin and
                  Elisa Salamanca and
                  Sylvie Cormont and
                  Thomas Ganslandt and
                  Tobias Gradinger and
                  Julien Champ and
                  Martin Boeker and
                  Patricia Martel and
                  Loic Esteve and
                  Alexandre Gramfort and
                  Olivier Grisel and
                  Damien Leprovost and
                  Thomas Moreau and
                  Ga{\"{e}}l Varoquaux and
                  Jill{-}J{\^{e}}nn Vie and
                  Demian Wassermann and
                  Arthur Mensch and
                  Charlotte Caucheteux and
                  Christian Haverkamp and
                  Guillaume Lemaitre and
                  Silvano Bosari and
                  Ian D. Krantz and
                  Andrew M. South and
                  Tianxi Cai and
                  Isaac S. Kohane},
  title        = {International electronic health record-derived {COVID-19} clinical
                  course profiles: the 4CE consortium},
  journal      = {npj Digit. Medicine},
  volume       = {3},
  year         = {2020},
  url          = {https://doi.org/10.1038/s41746-020-00308-0},
  doi          = {10.1038/S41746-020-00308-0},
  timestamp    = {Mon, 04 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/npjdm/BratWGAPCCWOMMB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/compsac/SaqibZWB20,
  author       = {Mohammed Saqib and
                  Yuanda Zhu and
                  May D. Wang and
                  Brett K. Beaulieu{-}Jones},
  title        = {Regularization of Deep Neural Networks for {EEG} Seizure Detection
                  to Mitigate Overfitting},
  booktitle    = {44th {IEEE} Annual Computers, Software, and Applications Conference,
                  {COMPSAC} 2020, Madrid, Spain, July 13-17, 2020},
  pages        = {664--673},
  publisher    = {{IEEE}},
  year         = {2020},
  url          = {https://doi.org/10.1109/COMPSAC48688.2020.0-182},
  doi          = {10.1109/COMPSAC48688.2020.0-182},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/compsac/SaqibZWB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/psb/KobrenBDKV20,
  author       = {Shilpa Nadimpalli Kobren and
                  Brett K. Beaulieu{-}Jones and
                  Christian Darabos and
                  Dokyoon Kim and
                  Anurag Verma},
  title        = {Session Introduction},
  booktitle    = {Pacific Symposium on Biocomputing 2020, Fairmont Orchid, Hawaii, USA,
                  January 3-7, 2020},
  pages        = {286--294},
  year         = {2020},
  url          = {https://psb.stanford.edu/psb-online/proceedings/psb20/Intro\_Biomed\%20Data.pdf},
  timestamp    = {Tue, 28 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/psb/KobrenBDKV20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/psb/BushWBD20,
  author       = {William S. Bush and
                  Nicholas Wheeler and
                  Brett K. Beaulieu{-}Jones and
                  Christian Darabos},
  title        = {Packaging Biocomputing Software to Maximize Distribution and Reuse},
  booktitle    = {Pacific Symposium on Biocomputing 2020, Fairmont Orchid, Hawaii, USA,
                  January 3-7, 2020},
  pages        = {739--742},
  year         = {2020},
  url          = {https://psb.stanford.edu/psb-online/proceedings/psb20/Bush.pdf},
  timestamp    = {Fri, 13 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/psb/BushWBD20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/corr/abs-2002-01584,
  author       = {Matthew B. A. McDermott and
                  Emily Alsentzer and
                  Samuel G. Finlayson and
                  Michael Oberst and
                  Fabian Falck and
                  Tristan Naumann and
                  Brett K. Beaulieu{-}Jones and
                  Adrian V. Dalca},
  title        = {{ML4H} Abstract Track 2019},
  journal      = {CoRR},
  volume       = {abs/2002.01584},
  year         = {2020},
  url          = {https://arxiv.org/abs/2002.01584},
  eprinttype    = {arXiv},
  eprint       = {2002.01584},
  timestamp    = {Mon, 10 Feb 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2002-01584.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/nips/DalcaMAFOFCBNB19,
  author       = {Adrian V. Dalca and
                  Matthew B. A. McDermott and
                  Emily Alsentzer and
                  Samuel G. Finlayson and
                  Michael Oberst and
                  Fabian Falck and
                  Corey Chivers and
                  Andrew Beam and
                  Tristan Naumann and
                  Brett K. Beaulieu{-}Jones},
  editor       = {Adrian V. Dalca and
                  Matthew B. A. McDermott and
                  Emily Alsentzer and
                  Samuel G. Finlayson and
                  Michael Oberst and
                  Fabian Falck and
                  Brett K. Beaulieu{-}Jones},
  title        = {Machine Learning for Health {(} {ML4H} {)} 2019 : What Makes Machine
                  Learning in Medicine Different?},
  booktitle    = {Machine Learning for Health Workshop, ML4H@NeurIPS 2019, Vancouver,
                  BC, Canada, 13 December 2019},
  series       = {Proceedings of Machine Learning Research},
  volume       = {116},
  pages        = {1--9},
  publisher    = {{PMLR}},
  year         = {2019},
  url          = {http://proceedings.mlr.press/v116/dalca20a.html},
  timestamp    = {Fri, 19 Jun 2020 23:27:30 +0200},
  biburl       = {https://dblp.org/rec/conf/nips/DalcaMAFOFCBNB19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/psb/Beaulieu-JonesK19,
  author       = {Brett K. Beaulieu{-}Jones and
                  Isaac S. Kohane and
                  Andrew L. Beam},
  editor       = {Russ B. Altman and
                  A. Keith Dunker and
                  Lawrence Hunter and
                  Marylyn D. Ritchie and
                  Teri E. Klein},
  title        = {Learning Contextual Hierarchical Structure of Medical Concepts with
                  Poincair{\'{e}} Embeddings to Clarify Phenotypes},
  booktitle    = {Biocomputing 2019: Proceedings of the Pacific Symposium, The Big Island
                  of Hawaii, Hawaii, USA, January 3-7, 2019},
  pages        = {8--17},
  year         = {2019},
  url          = {http://psb.stanford.edu/psb-online/proceedings/psb19/beaulieu-jones.pdf},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/psb/Beaulieu-JonesK19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@proceedings{DBLP:conf/nips/2019ml4h,
  editor       = {Adrian V. Dalca and
                  Matthew B. A. McDermott and
                  Emily Alsentzer and
                  Samuel G. Finlayson and
                  Michael Oberst and
                  Fabian Falck and
                  Brett K. Beaulieu{-}Jones},
  title        = {Machine Learning for Health Workshop, ML4H@NeurIPS 2019, Vancouver,
                  BC, Canada, 13 December 2019},
  series       = {Proceedings of Machine Learning Research},
  volume       = {116},
  publisher    = {{PMLR}},
  year         = {2019},
  url          = {http://proceedings.mlr.press/v116/},
  timestamp    = {Fri, 19 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/nips/2019ml4h.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/psb/Beaulieu-JonesO18,
  author       = {Brett K. Beaulieu{-}Jones and
                  Patryk Orzechowski and
                  Jason H. Moore},
  editor       = {Russ B. Altman and
                  A. Keith Dunker and
                  Lawrence Hunter and
                  Marylyn D. Ritchie and
                  Teri E. Klein},
  title        = {Mapping patient trajectories using longitudinal extraction and deep
                  learning in the {MIMIC-III} Critical Care Database},
  booktitle    = {Biocomputing 2018: Proceedings of the Pacific Symposium, The Big Island
                  of Hawaii, Hawaii, USA, January 3-7, 2018},
  pages        = {123--132},
  year         = {2018},
  url          = {http://psb.stanford.edu/psb-online/proceedings/psb18/beaulieu-jones.pdf},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/psb/Beaulieu-JonesO18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/corr/abs-1811-01294,
  author       = {Brett K. Beaulieu{-}Jones and
                  Isaac S. Kohane and
                  Andrew L. Beam},
  title        = {Learning Contextual Hierarchical Structure of Medical Concepts with
                  Poincair{\'{e}} Embeddings to Clarify Phenotypes},
  journal      = {CoRR},
  volume       = {abs/1811.01294},
  year         = {2018},
  url          = {http://arxiv.org/abs/1811.01294},
  eprinttype    = {arXiv},
  eprint       = {1811.01294},
  timestamp    = {Mon, 26 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1811-01294.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/corr/abs-1811-07216,
  author       = {Natalia Antropova and
                  Andrew L. Beam and
                  Brett K. Beaulieu{-}Jones and
                  Irene Chen and
                  Corey Chivers and
                  Adrian V. Dalca and
                  Samuel G. Finlayson and
                  Madalina Fiterau and
                  Jason Alan Fries and
                  Marzyeh Ghassemi and
                  Mike Hughes and
                  Bruno Jedynak and
                  Jasvinder S. Kandola and
                  Matthew B. A. McDermott and
                  Tristan Naumann and
                  Peter Schulam and
                  Farah Shamout and
                  Alexandre Yahi},
  title        = {Machine Learning for Health {(ML4H)} Workshop at NeurIPS 2018},
  journal      = {CoRR},
  volume       = {abs/1811.07216},
  year         = {2018},
  url          = {http://arxiv.org/abs/1811.07216},
  eprinttype    = {arXiv},
  eprint       = {1811.07216},
  timestamp    = {Sat, 23 Jan 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1811-07216.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/corr/abs-1812-01484,
  author       = {Brett K. Beaulieu{-}Jones and
                  William Yuan and
                  Samuel G. Finlayson and
                  Zhiwei Steven Wu},
  title        = {Privacy-Preserving Distributed Deep Learning for Clinical Data},
  journal      = {CoRR},
  volume       = {abs/1812.01484},
  year         = {2018},
  url          = {http://arxiv.org/abs/1812.01484},
  eprinttype    = {arXiv},
  eprint       = {1812.01484},
  timestamp    = {Tue, 01 Jan 2019 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1812-01484.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/psb/Beaulieu-JonesM17,
  author       = {Brett K. Beaulieu{-}Jones and
                  Jason H. Moore and
                  et al.},
  editor       = {Russ B. Altman and
                  A. Keith Dunker and
                  Lawrence Hunter and
                  Marylyn D. Ritchie and
                  Teri E. Klein},
  title        = {Missing Data Imputation in the Electronic Health Record Using Deeply
                  Learned Autoencoders},
  booktitle    = {Biocomputing 2017: Proceedings of the Pacific Symposium, Kohala Coast,
                  Hawaii, USA, January 3-7, 2017},
  pages        = {207--218},
  year         = {2017},
  url          = {http://psb.stanford.edu/psb-online/proceedings/psb17/beaulieujones.pdf},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/psb/Beaulieu-JonesM17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/corr/Beaulieu-Jones17,
  author       = {Brett K. Beaulieu{-}Jones},
  title        = {Machine Learning for Structured Clinical Data},
  journal      = {CoRR},
  volume       = {abs/1707.06997},
  year         = {2017},
  url          = {http://arxiv.org/abs/1707.06997},
  eprinttype    = {arXiv},
  eprint       = {1707.06997},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/Beaulieu-Jones17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jbi/Beaulieu-JonesG16,
  author       = {Brett K. Beaulieu{-}Jones and
                  Casey S. Greene},
  title        = {Semi-supervised learning of the electronic health record for phenotype
                  stratification},
  journal      = {J. Biomed. Informatics},
  volume       = {64},
  pages        = {168--178},
  year         = {2016},
  url          = {https://doi.org/10.1016/j.jbi.2016.10.007},
  doi          = {10.1016/J.JBI.2016.10.007},
  timestamp    = {Fri, 21 Feb 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jbi/Beaulieu-JonesG16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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