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ORCIDBibTeX records: Chris Bailey-Kellogg
@article{DBLP:journals/bioinformatics/DaiB21,
author = {Bowen Dai and
Chris Bailey{-}Kellogg},
title = {Protein interaction interface region prediction by geometric deep
learning},
journal = {Bioinform.},
volume = {37},
number = {17},
pages = {2580--2588},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab154},
doi = {10.1093/BIOINFORMATICS/BTAB154},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DaiB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/YachninMKB21,
author = {Brahm J. Yachnin and
Vikram Khipple Mulligan and
Sagar D. Khare and
Chris Bailey{-}Kellogg},
title = {MHCEpitopeEnergy, a Flexible Rosetta-Based Biotherapeutic Deimmunization
Platform},
journal = {J. Chem. Inf. Model.},
volume = {61},
number = {5},
pages = {2368--2382},
year = {2021},
url = {https://doi.org/10.1021/acs.jcim.1c00056},
doi = {10.1021/ACS.JCIM.1C00056},
timestamp = {Tue, 15 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/YachninMKB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/MitchellVGB21,
author = {Spencer J. Mitchell and
Deeptak Verma and
Karl E. Griswold and
Chris Bailey{-}Kellogg},
title = {Building blocks and blueprints for bacterial autolysins},
journal = {PLoS Comput. Biol.},
volume = {17},
number = {4},
year = {2021},
url = {https://doi.org/10.1371/journal.pcbi.1008889},
doi = {10.1371/JOURNAL.PCBI.1008889},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/MitchellVGB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/MattoxB21,
author = {Daniel E. Mattox and
Chris Bailey{-}Kellogg},
title = {Comprehensive analysis of lectin-glycan interactions reveals determinants
of lectin specificity},
journal = {PLoS Comput. Biol.},
volume = {17},
number = {10},
year = {2021},
url = {https://doi.org/10.1371/journal.pcbi.1009470},
doi = {10.1371/JOURNAL.PCBI.1009470},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/MattoxB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/OhDB21,
author = {Lisa Oh and
Bowen Dai and
Chris Bailey{-}Kellogg},
editor = {Hongmei Jiang and
Xiuzhen Huang and
Jiajie Zhang},
title = {A multi-resolution graph convolution network for contiguous epitope
prediction},
booktitle = {{BCB} '21: 12th {ACM} International Conference on Bioinformatics,
Computational Biology and Health Informatics, Gainesville, Florida,
USA, August 1-4, 2021},
pages = {38:1--38:10},
publisher = {{ACM}},
year = {2021},
url = {https://doi.org/10.1145/3459930.3469540},
doi = {10.1145/3459930.3469540},
timestamp = {Wed, 04 Aug 2021 13:34:07 +0200},
biburl = {https://dblp.org/rec/conf/bcb/OhDB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PittalaB20,
author = {Srivamshi Pittala and
Chris Bailey{-}Kellogg},
title = {Learning context-aware structural representations to predict antigen
and antibody binding interfaces},
journal = {Bioinform.},
volume = {36},
number = {13},
pages = {3996--4003},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btaa263},
doi = {10.1093/BIOINFORMATICS/BTAA263},
timestamp = {Fri, 25 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PittalaB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ChoiJCNGBK20,
author = {Yoonjoo Choi and
Sukyo Jeong and
Jung{-}Min Choi and
Christian NDong and
Karl E. Griswold and
Chris Bailey{-}Kellogg and
Hak{-}Sung Kim},
title = {Computer-guided binding mode identification and affinity improvement
of an {LRR} protein binder without structure determination},
journal = {PLoS Comput. Biol.},
volume = {16},
number = {8},
year = {2020},
url = {https://doi.org/10.1371/journal.pcbi.1008150},
doi = {10.1371/JOURNAL.PCBI.1008150},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ChoiJCNGBK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ThakkarB19,
author = {Neerja Thakkar and
Chris Bailey{-}Kellogg},
title = {Balancing sensitivity and specificity in distinguishing {TCR} groups
by {CDR} sequence similarity},
journal = {{BMC} Bioinform.},
volume = {20},
number = {1},
pages = {241:1--241:14},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-2864-8},
doi = {10.1186/S12859-019-2864-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ThakkarB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/VermaGB19,
author = {Deeptak Verma and
Gevorg Grigoryan and
Chris Bailey{-}Kellogg},
title = {Pareto Optimization of Combinatorial Mutagenesis Libraries},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {16},
number = {4},
pages = {1143--1153},
year = {2019},
url = {https://doi.org/10.1109/TCBB.2018.2858794},
doi = {10.1109/TCBB.2018.2858794},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/VermaGB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChoiFAGB18,
author = {Yoonjoo Choi and
Jacob M. Furlon and
Ryan B. Amos and
Karl E. Griswold and
Chris Bailey{-}Kellogg},
title = {DisruPPI: structure-based computational redesign algorithm for protein
binding disruption},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i245--i253},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty274},
doi = {10.1093/BIOINFORMATICS/BTY274},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChoiFAGB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/gis/RamakrishnanB17,
author = {Naren Ramakrishnan and
Chris Bailey{-}Kellogg},
editor = {Shashi Shekhar and
Hui Xiong and
Xun Zhou},
title = {Gaussian Process Models in Spatial Data Mining},
booktitle = {Encyclopedia of {GIS}},
pages = {639--644},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-17885-1\_440},
doi = {10.1007/978-3-319-17885-1\_440},
timestamp = {Fri, 03 Apr 2020 17:07:19 +0200},
biburl = {https://dblp.org/rec/reference/gis/RamakrishnanB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/VermaGB16,
author = {Deeptak Verma and
Gevorg Grigoryan and
Chris Bailey{-}Kellogg},
title = {OCoM-SOCoM: Combinatorial Mutagenesis Library Design Optimally Combining
Sequence and Structure Information},
booktitle = {Proceedings of the 7th {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2016, Seattle,
WA, USA, October 2-5, 2016},
pages = {307--316},
publisher = {{ACM}},
year = {2016},
url = {https://doi.org/10.1145/2975167.2975199},
doi = {10.1145/2975167.2975199},
timestamp = {Tue, 06 Nov 2018 16:59:10 +0100},
biburl = {https://dblp.org/rec/conf/bcb/VermaGB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GutierrezMBTMG15,
author = {Andres H. Guti{\'{e}}rrez and
William D. Martin and
Chris Bailey{-}Kellogg and
Frances Terry and
Leonard Moise and
Anne S. De Groot},
title = {Development and validation of an epitope prediction tool for swine
(PigMatrix) based on the pocket profile method},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {290:1--290:11},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0724-8},
doi = {10.1186/S12859-015-0724-8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GutierrezMBTMG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KamisettyGLB15,
author = {Hetunandan Kamisetty and
Bornika Ghosh and
Christopher James Langmead and
Chris Bailey{-}Kellogg},
title = {Learning Sequence Determinants of Protein: Protein Interaction Specificity
with Sparse Graphical Models},
journal = {J. Comput. Biol.},
volume = {22},
number = {6},
pages = {474--486},
year = {2015},
url = {https://doi.org/10.1089/cmb.2014.0289},
doi = {10.1089/CMB.2014.0289},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/KamisettyGLB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/SalvatPCBG15,
author = {Regina S. Salvat and
Andrew S. Parker and
Yoonjoo Choi and
Chris Bailey{-}Kellogg and
Karl E. Griswold},
title = {Mapping the Pareto Optimal Design Space for a Functionally Deimmunized
Biotherapeutic Candidate},
journal = {PLoS Comput. Biol.},
volume = {11},
number = {1},
year = {2015},
url = {https://doi.org/10.1371/journal.pcbi.1003988},
doi = {10.1371/JOURNAL.PCBI.1003988},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/SalvatPCBG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ChoiCSRPNKOFRMK15,
author = {Ickwon Choi and
Amy W. Chung and
Todd J. Suscovich and
Supachai Rerks{-}Ngarm and
Punnee Pitisuttithum and
Sorachai Nitayaphan and
Jaranit Kaewkungwal and
Robert J. O'Connell and
Donald Francis and
Merlin L. Robb and
Nelson Michael and
Jerome H. Kim and
Galit Alter and
Margaret E. Ackerman and
Chris Bailey{-}Kellogg},
title = {Machine Learning Methods Enable Predictive Modeling of Antibody Feature:
Function Relationships in {RV144} Vaccinees},
journal = {PLoS Comput. Biol.},
volume = {11},
number = {4},
year = {2015},
url = {https://doi.org/10.1371/journal.pcbi.1004185},
doi = {10.1371/JOURNAL.PCBI.1004185},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ChoiCSRPNKOFRMK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HeGGMMB14,
author = {Lu He and
Anne S. De Groot and
Andres H. Guti{\'{e}}rrez and
William D. Martin and
Lenny Moise and
Chris Bailey{-}Kellogg},
title = {Integrated assessment of predicted {MHC} binding and cross-conservation
with self reveals patterns of viral camouflage},
journal = {{BMC} Bioinform.},
volume = {15},
number = {{S-4}},
pages = {S1},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-S4-S1},
doi = {10.1186/1471-2105-15-S4-S1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HeGGMMB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KamisettyGLB14,
author = {Hetunandan Kamisetty and
Bornika Ghosh and
Christopher James Langmead and
Chris Bailey{-}Kellogg},
editor = {Roded Sharan},
title = {Learning Sequence Determinants of Protein: Protein Interaction Specificity
with Sparse Graphical Models},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {129--143},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_10},
doi = {10.1007/978-3-319-05269-4\_10},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KamisettyGLB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HeVPB13,
author = {Lu He and
Fabio Vandin and
Gopal Pandurangan and
Chris Bailey{-}Kellogg},
title = {Ballast: {A} Ball-based Algorithm for Structural Motifs},
journal = {J. Comput. Biol.},
volume = {20},
number = {2},
pages = {137--151},
year = {2013},
url = {https://doi.org/10.1089/cmb.2012.0246},
doi = {10.1089/CMB.2012.0246},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/HeVPB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ParkerCGB13,
author = {Andrew S. Parker and
Yoonjoo Choi and
Karl E. Griswold and
Chris Bailey{-}Kellogg},
title = {Structure-Guided Deimmunization of Therapeutic Proteins},
journal = {J. Comput. Biol.},
volume = {20},
number = {2},
pages = {152--165},
year = {2013},
url = {https://doi.org/10.1089/cmb.2012.0251},
doi = {10.1089/CMB.2012.0251},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ParkerCGB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcc/ChoiGB13,
author = {Yoonjoo Choi and
Karl E. Griswold and
Chris Bailey{-}Kellogg},
title = {Structure-based redesign of proteins for minimal T-cell epitope content},
journal = {J. Comput. Chem.},
volume = {34},
number = {10},
pages = {879--891},
year = {2013},
url = {https://doi.org/10.1002/jcc.23213},
doi = {10.1002/JCC.23213},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcc/ChoiGB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HossainPL0BR13,
author = {K. S. M. Tozammel Hossain and
Debprakash Patnaik and
Srivatsan Laxman and
Prateek Jain and
Chris Bailey{-}Kellogg and
Naren Ramakrishnan},
title = {Improved Multiple Sequence Alignments Using Coupled Pattern Mining},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {10},
number = {5},
pages = {1098--1112},
year = {2013},
url = {https://doi.org/10.1109/TCBB.2013.36},
doi = {10.1109/TCBB.2013.36},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HossainPL0BR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChandolaDB13,
author = {Himanshu Chandola and
Bruce Randall Donald and
Chris Bailey{-}Kellogg},
editor = {Jing Gao},
title = {Simultaneous determination of subunit and complex structures of symmetric
homo-oligomers from ambiguous {NMR} data},
booktitle = {{ACM} Conference on Bioinformatics, Computational Biology and Biomedical
Informatics. {ACM-BCB} 2013, Washington, DC, USA, September 22-25,
2013},
pages = {171},
publisher = {{ACM}},
year = {2013},
url = {https://doi.org/10.1145/2506583.2506613},
doi = {10.1145/2506583.2506613},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/ChandolaDB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangKGB12,
author = {Tuobin Wang and
Arminja N. Kettenbach and
Scott A. Gerber and
Chris Bailey{-}Kellogg},
title = {MMFPh: a maximal motif finder for phosphoproteomics datasets},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {1562--1570},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts195},
doi = {10.1093/BIOINFORMATICS/BTS195},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangKGB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangKGB12a,
author = {Tuobin Wang and
Arminja N. Kettenbach and
Scott A. Gerber and
Chris Bailey{-}Kellogg},
title = {Response to 'Comments on "MMFPh: {A} Maximal Motif Finder for
Phosphoproteomics Datasets"'},
journal = {Bioinform.},
volume = {28},
number = {16},
pages = {2213},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts347},
doi = {10.1093/BIOINFORMATICS/BTS347},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangKGB12a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HeFB12,
author = {Lu He and
Alan M. Friedman and
Chris Bailey{-}Kellogg},
title = {Algorithms for optimizing cross-overs in {DNA} shuffling},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-3}},
pages = {S3},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S3-S3},
doi = {10.1186/1471-2105-13-S3-S3},
timestamp = {Wed, 08 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HeFB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/HossainPLJBR12,
author = {K. S. M. Tozammel Hossain and
Debprakash Patnaik and
Srivatsan Laxman and
Prateek Jain and
Chris Bailey{-}Kellogg and
Naren Ramakrishnan},
editor = {Sanjay Ranka and
Tamer Kahveci and
Mona Singh},
title = {Improved multiple sequence alignments using coupled pattern mining},
booktitle = {{ACM} International Conference on Bioinformatics, Computational Biology
and Biomedicine, BCB' 12, Orlando, FL, {USA} - October 08 - 10, 2012},
pages = {28--35},
publisher = {{ACM}},
year = {2012},
url = {https://doi.org/10.1145/2382936.2382940},
doi = {10.1145/2382936.2382940},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/HossainPLJBR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/GutierrezMTDBMG12,
author = {Andres H. Guti{\'{e}}rrez and
Leonard Moise and
Frances Terry and
Kristen Dasilva and
Chris Bailey{-}Kellogg and
William D. Martin and
Anne S. De Groot},
editor = {Sanjay Ranka and
Tamer Kahveci and
Mona Singh},
title = {Immunoinformatic analysis of Chinese hamster ovary {(CHO)} protein
contaminants in therapeutic protein formulations},
booktitle = {{ACM} International Conference on Bioinformatics, Computational Biology
and Biomedicine, BCB' 12, Orlando, FL, {USA} - October 08 - 10, 2012},
pages = {637--642},
publisher = {{ACM}},
year = {2012},
url = {https://doi.org/10.1145/2382936.2383049},
doi = {10.1145/2382936.2383049},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/GutierrezMTDBMG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HeVPB12,
author = {Lu He and
Fabio Vandin and
Gopal Pandurangan and
Chris Bailey{-}Kellogg},
editor = {Benny Chor},
title = {Ballast: {A} Ball-Based Algorithm for Structural Motifs},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {79--93},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_9},
doi = {10.1007/978-3-642-29627-7\_9},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HeVPB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ParkerGB12,
author = {Andrew S. Parker and
Karl E. Griswold and
Chris Bailey{-}Kellogg},
editor = {Benny Chor},
title = {Structure-Guided Deimmunization of Therapeutic Proteins},
booktitle = {Research in Computational Molecular Biology - 16th Annual International
Conference, {RECOMB} 2012, Barcelona, Spain, April 21-24, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7262},
pages = {184--198},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-29627-7\_19},
doi = {10.1007/978-3-642-29627-7\_19},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ParkerGB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XiongFB11,
author = {Fei Xiong and
Alan M. Friedman and
Chris Bailey{-}Kellogg},
title = {Planning combinatorial disulfide cross-links for protein fold determination},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-12}},
pages = {S5},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S12-S5},
doi = {10.1186/1471-2105-12-S12-S5},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XiongFB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/ParkerGB11,
author = {Andrew S. Parker and
Karl E. Griswold and
Chris Bailey{-}Kellogg},
title = {Optimization of Therapeutic proteins to Delete T-Cell epitopes while
Maintaining Beneficial Residue Interactions},
journal = {J. Bioinform. Comput. Biol.},
volume = {9},
number = {2},
pages = {207--229},
year = {2011},
url = {https://doi.org/10.1142/S0219720011005471},
doi = {10.1142/S0219720011005471},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/ParkerGB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MartinYBZD11,
author = {Jeffrey W. Martin and
Anthony K. Yan and
Chris Bailey{-}Kellogg and
Pei Zhou and
Bruce Randall Donald},
title = {A Geometric Arrangement Algorithm for Structure Determination of Symmetric
Protein Homo-Oligomers from NOEs and RDCs},
journal = {J. Comput. Biol.},
volume = {18},
number = {11},
pages = {1507--1523},
year = {2011},
url = {https://doi.org/10.1089/cmb.2011.0173},
doi = {10.1089/CMB.2011.0173},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/MartinYBZD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ParkerGB11,
author = {Andrew S. Parker and
Karl E. Griswold and
Chris Bailey{-}Kellogg},
title = {Optimization of Combinatorial Mutagenesis},
journal = {J. Comput. Biol.},
volume = {18},
number = {11},
pages = {1743--1756},
year = {2011},
url = {https://doi.org/10.1089/cmb.2011.0152},
doi = {10.1089/CMB.2011.0152},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ParkerGB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ChandolaYPDB11,
author = {Himanshu Chandola and
Anthony K. Yan and
Shobha Potluri and
Bruce Randall Donald and
Chris Bailey{-}Kellogg},
title = {{NMR} Structural Inference of Symmetric Homo-Oligomers},
journal = {J. Comput. Biol.},
volume = {18},
number = {12},
pages = {1757--1775},
year = {2011},
url = {https://doi.org/10.1089/cmb.2010.0327},
doi = {10.1089/CMB.2010.0327},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/ChandolaYPDB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/HeFB11,
author = {Lu He and
Alan M. Friedman and
Chris Bailey{-}Kellogg},
editor = {Robert Grossman and
Andrey Rzhetsky and
Sun Kim and
Wei Wang},
title = {Algorithms for optimizing cross-overs in {DNA} shuffling},
booktitle = {{ACM} International Conference on Bioinformatics, Computational Biology
and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
2011},
pages = {143--152},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2147805.2147821},
doi = {10.1145/2147805.2147821},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/HeFB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kdd/HossainBFBBR11,
author = {K. S. M. Tozammel Hossain and
Chris Bailey{-}Kellogg and
Alan M. Friedman and
Michael J. Bradley and
Nathan A. Baker and
Naren Ramakrishnan},
editor = {Mohammed J. Zaki and
Jake Yue Chen and
Mohammad Al Hasan and
Jun Huan},
title = {Using physicochemical properties of amino acids to induce graphical
models of residue couplings},
booktitle = {Proceedings of the Tenth International Workshop on Data Mining in
Bioinformatics, {BIOKDD} '11, San Diego, California, USA, August 21,
2011},
pages = {3:1--3:10},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2003351.2003354},
doi = {10.1145/2003351.2003354},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/kdd/HossainBFBBR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MartinYBZD11,
author = {Jeffrey W. Martin and
Anthony K. Yan and
Chris Bailey{-}Kellogg and
Pei Zhou and
Bruce Randall Donald},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {A Geometric Arrangement Algorithm for Structure Determination of Symmetric
Protein Homo-oligomers from NOEs and RDCs},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {222--237},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_21},
doi = {10.1007/978-3-642-20036-6\_21},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MartinYBZD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ParkerGB11,
author = {Andrew S. Parker and
Karl E. Griswold and
Chris Bailey{-}Kellogg},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Optimization of Combinatorial Mutagenesis},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {321--335},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_29},
doi = {10.1007/978-3-642-20036-6\_29},
timestamp = {Mon, 13 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ParkerGB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ParkerZGB10,
author = {Andrew S. Parker and
Wei Zheng and
Karl E. Griswold and
Chris Bailey{-}Kellogg},
title = {Optimization algorithms for functional deimmunization of therapeutic
proteins},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {180},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-180},
doi = {10.1186/1471-2105-11-180},
timestamp = {Thu, 17 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ParkerZGB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/KavathekarCFBB10,
author = {Paritosh A. Kavathekar and
Bruce A. Craig and
Alan M. Friedman and
Chris Bailey{-}Kellogg and
Devin J. Balkcom},
title = {Characterizing the Space of interatomic Distance Distribution Functions
Consistent with Solution Scattering Data},
journal = {J. Bioinform. Comput. Biol.},
volume = {8},
number = {2},
pages = {315--335},
year = {2010},
url = {https://doi.org/10.1142/S0219720010004781},
doi = {10.1142/S0219720010004781},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/KavathekarCFBB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ZhengGB10,
author = {Wei Zheng and
Karl E. Griswold and
Chris Bailey{-}Kellogg},
title = {Protein Fragment Swapping: {A} Method for Asymmetric, Selective Site-Directed
Recombination},
journal = {J. Comput. Biol.},
volume = {17},
number = {3},
pages = {459--475},
year = {2010},
url = {https://doi.org/10.1089/cmb.2009.0189},
doi = {10.1089/CMB.2009.0189},
timestamp = {Thu, 17 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/ZhengGB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ZhengFB09,
author = {Wei Zheng and
Alan M. Friedman and
Chris Bailey{-}Kellogg},
title = {Algorithms for Joint Optimization of Stability and Diversity in Planning
Combinatorial Libraries of Chimeric Proteins},
journal = {J. Comput. Biol.},
volume = {16},
number = {8},
pages = {1151--1168},
year = {2009},
url = {https://doi.org/10.1089/cmb.2009.0090},
doi = {10.1089/CMB.2009.0090},
timestamp = {Thu, 17 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/ZhengFB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ThomasRB09,
author = {John Thomas and
Naren Ramakrishnan and
Chris Bailey{-}Kellogg},
title = {Protein Design by Sampling an Undirected Graphical Model of Residue
Constraints},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {6},
number = {3},
pages = {506--516},
year = {2009},
url = {https://doi.org/10.1109/TCBB.2008.124},
doi = {10.1109/TCBB.2008.124},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ThomasRB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhengGB09,
author = {Wei Zheng and
Karl E. Griswold and
Chris Bailey{-}Kellogg},
editor = {Serafim Batzoglou},
title = {Protein Fragment Swapping: {A} Method for Asymmetric, Selective Site-Directed
Recombination},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {321--338},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_24},
doi = {10.1007/978-3-642-02008-7\_24},
timestamp = {Thu, 17 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhengGB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ThomasRB08,
author = {John Thomas and
Naren Ramakrishnan and
Chris Bailey{-}Kellogg},
title = {Graphical Models of Residue Coupling in Protein Families},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {5},
number = {2},
pages = {183--197},
year = {2008},
url = {https://doi.org/10.1109/TCBB.2007.70225},
doi = {10.1109/TCBB.2007.70225},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ThomasRB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/XiongPB08,
author = {Fei Xiong and
Gopal Pandurangan and
Chris Bailey{-}Kellogg},
title = {Contact replacement for {NMR} resonance assignment},
booktitle = {Proceedings 16th International Conference on Intelligent Systems for
Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
pages = {205--213},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn167},
doi = {10.1093/BIOINFORMATICS/BTN167},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/XiongPB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/ZhengFB08,
author = {Wei Zheng and
Alan M. Friedman and
Chris Bailey{-}Kellogg},
editor = {Martin Vingron and
Limsoon Wong},
title = {Algorithms for Joint Optimization of Stability and Diversity in Planning
Combinatorial Libraries of Chimeric Proteins},
booktitle = {Research in Computational Molecular Biology, 12th Annual International
Conference, {RECOMB} 2008, Singapore, March 30 - April 2, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4955},
pages = {300--314},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-78839-3\_26},
doi = {10.1007/978-3-540-78839-3\_26},
timestamp = {Thu, 17 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/ZhengFB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/gis/RamakrishnanB08,
author = {Naren Ramakrishnan and
Chris Bailey{-}Kellogg},
editor = {Shashi Shekhar and
Hui Xiong},
title = {Gaussian Process Models in Spatial Data Mining},
booktitle = {Encyclopedia of {GIS}},
pages = {325--329},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-0-387-35973-1\_440},
doi = {10.1007/978-0-387-35973-1\_440},
timestamp = {Fri, 03 Apr 2020 17:07:19 +0200},
biburl = {https://dblp.org/rec/reference/gis/RamakrishnanB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/YeFB07,
author = {Xiaoduan Ye and
Alan M. Friedman and
Chris Bailey{-}Kellogg},
title = {Hypergraph Model of Multi-Residue Interactions in Proteins: Sequentially-Constrained
Partitioning Algorithms for Optimization of Site-Directed Protein
Recombination},
journal = {J. Comput. Biol.},
volume = {14},
number = {6},
pages = {777--790},
year = {2007},
url = {https://doi.org/10.1089/cmb.2007.R016},
doi = {10.1089/CMB.2007.R016},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/YeFB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/XiongB07,
author = {Fei Xiong and
Chris Bailey{-}Kellogg},
title = {A Hierarchical Grow-and-Match Algorithm for Backbone Resonance Assignments
Given 3D Structure},
booktitle = {Proceedings of the 7th {IEEE} International Conference on Bioinformatics
and Bioengineering, {BIBE} 2007, October 14-17, 2007, Harvard Medical
School, Boston, MA, {USA}},
pages = {403--410},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/BIBE.2007.4375594},
doi = {10.1109/BIBE.2007.4375594},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/XiongB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:conf/dis/ZhaoBHO07,
author = {Feng Zhao and
Chris Bailey{-}Kellogg and
Xingang Huang and
Iv{\'{a}}n Ord{\'{o}}{\~{n}}ez},
editor = {Saso Dzeroski and
Ljupco Todorovski},
title = {Structure Discovery from Massive Spatial Data Sets Using Intelligent
Simulation Tools},
booktitle = {Computational Discovery of Scientific Knowledge, Introduction, Techniques,
and Applications in Environmental and Life Sciences},
series = {Lecture Notes in Computer Science},
volume = {4660},
pages = {158--174},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-73920-3\_8},
doi = {10.1007/978-3-540-73920-3\_8},
timestamp = {Tue, 14 May 2019 10:00:46 +0200},
biburl = {https://dblp.org/rec/conf/dis/ZhaoBHO07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KamisettyBP06,
author = {Hetunandan Kamisetty and
Chris Bailey{-}Kellogg and
Gopal Pandurangan},
title = {An efficient randomized algorithm for contact-based {NMR} backbone
resonance assignment},
journal = {Bioinform.},
volume = {22},
number = {2},
pages = {172--180},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/bti786},
doi = {10.1093/BIOINFORMATICS/BTI786},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KamisettyBP06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigkdd/Bailey-KelloggRM06,
author = {Chris Bailey{-}Kellogg and
Naren Ramakrishnan and
Madhav V. Marathe},
title = {Spatial data mining to support pandemic preparedness},
journal = {{SIGKDD} Explor.},
volume = {8},
number = {1},
pages = {80--82},
year = {2006},
url = {https://doi.org/10.1145/1147234.1147246},
doi = {10.1145/1147234.1147246},
timestamp = {Tue, 29 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sigkdd/Bailey-KelloggRM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YeFB06,
author = {Xiaoduan Ye and
Alan M. Friedman and
Chris Bailey{-}Kellogg},
editor = {Alberto Apostolico and
Concettina Guerra and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Hypergraph Model of Multi-residue Interactions in Proteins: Sequentially-Constrained
Partitioning Algorithms for Optimization of Site-Directed Protein
Recombination},
booktitle = {Research in Computational Molecular Biology, 10th Annual International
Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3909},
pages = {15--29},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732990\_2},
doi = {10.1007/11732990\_2},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YeFB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wafr/PotluriYCDB06,
author = {Shobha Potluri and
Anthony K. Yan and
James J. Chou and
Bruce Randall Donald and
Chris Bailey{-}Kellogg},
editor = {Srinivas Akella and
Nancy M. Amato and
Wesley H. Huang and
Bud Mishra},
title = {Extended Abstract: Structure Determination of Symmetric Protein Complexes
by a Complete Search of Symmetry Configuration Space Using {NMR} Distance
Restraints},
booktitle = {Algorithmic Foundation of Robotics VII, Selected Contributions of
the Seventh International Workshop on the Algorithmic Foundations
of Robotics, {WAFR} 2006, July 16-18, 2006, New York, NY, {USA}},
series = {Springer Tracts in Advanced Robotics},
volume = {47},
pages = {335--340},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-3-540-68405-3\_21},
doi = {10.1007/978-3-540-68405-3\_21},
timestamp = {Fri, 19 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wafr/PotluriYCDB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Bailey-KelloggCP05,
author = {Chris Bailey{-}Kellogg and
Sheetal Chainraj and
Gopal Pandurangan},
title = {A Random Graph Approach to {NMR} Sequential Assignment},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {569--583},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.569},
doi = {10.1089/CMB.2005.12.569},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/Bailey-KelloggCP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/VitekBCKV05,
author = {Olga Vitek and
Chris Bailey{-}Kellogg and
Bruce A. Craig and
Paul Kuliniewicz and
Jan Vitek},
title = {Reconsidering complete search algorithms for protein backbone {NMR}
assignment},
booktitle = {ECCB/JBI'05 Proceedings, Fourth European Conference on Computational
Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas
de BioInform{\'{a}}tica), Palacio de Congresos, Madrid, Spain,
September 28 - October 1, 2005},
pages = {236},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti1138},
doi = {10.1093/BIOINFORMATICS/BTI1138},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eccb/VitekBCKV05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kdd/ThomasRB05,
author = {John Thomas and
Naren Ramakrishnan and
Chris Bailey{-}Kellogg},
editor = {Srinivasan Parthasarathy and
Wei Wang and
Mohammed J. Zaki},
title = {Graphical models of residue coupling in protein families},
booktitle = {Proceedings of the 5th international workshop on Bioinformatics, {BIOKDD}
2005, Chicago, Illinois, USA, August 21, 2005},
pages = {12--20},
publisher = {{ACM}},
year = {2005},
url = {https://doi.org/10.1145/1134030.1134033},
doi = {10.1145/1134030.1134033},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/kdd/ThomasRB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sdm/RamakrishnanBTP05,
author = {Naren Ramakrishnan and
Chris Bailey{-}Kellogg and
Satish Tadepalli and
Varun Pandey},
editor = {Hillol Kargupta and
Jaideep Srivastava and
Chandrika Kamath and
Arnold Goodman},
title = {Gaussian Processes for Active Data Mining of Spatial Aggregates},
booktitle = {Proceedings of the 2005 {SIAM} International Conference on Data Mining,
{SDM} 2005, Newport Beach, CA, USA, April 21-23, 2005},
pages = {427--438},
publisher = {{SIAM}},
year = {2005},
url = {https://doi.org/10.1137/1.9781611972757.38},
doi = {10.1137/1.9781611972757.38},
timestamp = {Fri, 06 Oct 2023 11:45:43 +0200},
biburl = {https://dblp.org/rec/conf/sdm/RamakrishnanBTP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/aim/Bailey-KelloggZ04,
author = {Christopher Bailey{-}Kellogg and
Feng Zhao},
title = {Qualitative Spatial Reasoning Extracting and Reasoning with Spatial
Aggregates},
journal = {{AI} Mag.},
volume = {24},
number = {4},
pages = {47--60},
year = {2004},
url = {https://doi.org/10.1609/aimag.v24i4.1730},
doi = {10.1609/AIMAG.V24I4.1730},
timestamp = {Tue, 25 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/aim/Bailey-KelloggZ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/Bailey-KelloggR04,
author = {Chris Bailey{-}Kellogg and
Naren Ramakrishnan},
editor = {Deborah L. McGuinness and
George Ferguson},
title = {Spatial Aggregation for Qualitative Assessment of Scientific Computations},
booktitle = {Proceedings of the Nineteenth National Conference on Artificial Intelligence,
Sixteenth Conference on Innovative Applications of Artificial Intelligence,
July 25-29, 2004, San Jose, California, {USA}},
pages = {585--591},
publisher = {{AAAI} Press / The {MIT} Press},
year = {2004},
url = {http://www.aaai.org/Library/AAAI/2004/aaai04-093.php},
timestamp = {Tue, 05 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aaai/Bailey-KelloggR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/PotluriKKBFB04,
author = {Shobha Potluri and
Aly Azeem Khan and
A. Kuzminykh and
Janusz M. Bujnicki and
Alan M. Friedman and
Chris Bailey{-}Kellogg},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany A. Jung and
Teri E. Klein},
title = {Geometric Analysis of Cross-Linkability for Protein Fold Discrimination},
booktitle = {Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA,
6-10 January 2004},
pages = {447--458},
publisher = {World Scientific},
year = {2004},
url = {http://psb.stanford.edu/psb-online/proceedings/psb04/potluri.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/PotluriKKBFB04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Bailey-KelloggCP04,
author = {Chris Bailey{-}Kellogg and
Sheetal Chainraj and
Gopal Pandurangan},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {A random graph approach to {NMR} sequential assignment},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {58--67},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974623},
doi = {10.1145/974614.974623},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Bailey-KelloggCP04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pieee/ZhaoBF03,
author = {Feng Zhao and
Christopher Bailey{-}Kellogg and
Markus P. J. Fromherz},
title = {Physics-based encapsulation in embedded software for distributed sensing
and control applications},
journal = {Proc. {IEEE}},
volume = {91},
number = {1},
pages = {40--63},
year = {2003},
url = {https://doi.org/10.1109/JPROC.2002.805819},
doi = {10.1109/JPROC.2002.805819},
timestamp = {Mon, 04 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/pieee/ZhaoBF03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icsm/LinosB03,
author = {Panagiotis K. Linos and
Chris Bailey{-}Kellogg},
title = {Service Learning in Software Engineering and Maintenance},
booktitle = {19th International Conference on Software Maintenance {(ICSM} 2003),
The Architecture of Existing Systems, 22-26 September 2003, Amsterdam,
The Netherlands},
pages = {336},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/ICSM.2003.1235440},
doi = {10.1109/ICSM.2003.1235440},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icsm/LinosB03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcai/RamakrishnanB03,
author = {Naren Ramakrishnan and
Christopher Bailey{-}Kellogg},
editor = {Georg Gottlob and
Toby Walsh},
title = {Gaussian Process Models of Spatial Aggregation Algorithms},
booktitle = {IJCAI-03, Proceedings of the Eighteenth International Joint Conference
on Artificial Intelligence, Acapulco, Mexico, August 9-15, 2003},
pages = {1045--1051},
publisher = {Morgan Kaufmann},
year = {2003},
url = {http://ijcai.org/Proceedings/03/Papers/150.pdf},
timestamp = {Tue, 20 Aug 2019 16:18:41 +0200},
biburl = {https://dblp.org/rec/conf/ijcai/RamakrishnanB03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cse/RamakrishnanB02,
author = {Naren Ramakrishnan and
Chris Bailey{-}Kellogg},
title = {Sampling strategies for mining in data-scarce domains},
journal = {Comput. Sci. Eng.},
volume = {4},
number = {4},
pages = {31--43},
year = {2002},
url = {https://doi.org/10.1109/MCISE.2002.1014978},
doi = {10.1109/MCISE.2002.1014978},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cse/RamakrishnanB02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/cs-AI-0204053,
author = {Christopher Bailey{-}Kellogg and
Naren Ramakrishnan},
title = {Qualitative Analysis of Correspondence for Experimental Algorithmics},
journal = {CoRR},
volume = {cs.AI/0204053},
year = {2002},
url = {https://arxiv.org/abs/cs/0204053},
timestamp = {Fri, 10 Jan 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/cs-AI-0204053.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/cs-CE-0204047,
author = {Naren Ramakrishnan and
Christopher Bailey{-}Kellogg},
title = {Sampling Strategies for Mining in Data-Scarce Domains},
journal = {CoRR},
volume = {cs.CE/0204047},
year = {2002},
url = {https://arxiv.org/abs/cs/0204047},
timestamp = {Fri, 10 Jan 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/cs-CE-0204047.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ai/Bailey-KelloggZ01,
author = {Christopher Bailey{-}Kellogg and
Feng Zhao},
title = {Influence-based model decomposition for reasoning about spatially
distributed physical systems},
journal = {Artif. Intell.},
volume = {130},
number = {2},
pages = {125--166},
year = {2001},
url = {https://doi.org/10.1016/S0004-3702(01)00090-X},
doi = {10.1016/S0004-3702(01)00090-X},
timestamp = {Wed, 24 Apr 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ai/Bailey-KelloggZ01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Bailey-KelloggKSD01,
author = {Christopher Bailey{-}Kellogg and
John J. Kelley and
Clifford Stein and
Bruce Randall Donald},
title = {Reducing Mass Degeneracy in {SAR} by {MS} by Stable Isotopic Labeling},
journal = {J. Comput. Biol.},
volume = {8},
number = {1},
pages = {19--36},
year = {2001},
url = {https://doi.org/10.1089/106652701300099056},
doi = {10.1089/106652701300099056},
timestamp = {Mon, 17 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/Bailey-KelloggKSD01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icra/DonaldBKL01,
author = {Bruce Randall Donald and
Christopher Bailey{-}Kellogg and
Jack Kelley and
Ryan H. Lilien},
title = {Physical Geometric Algorithms for Structural Molecular Biology},
booktitle = {Proceedings of the 2001 {IEEE} International Conference on Robotics
and Automation, {ICRA} 2001, May 21-26, 2001, Seoul, Korea},
pages = {940--947},
publisher = {{IEEE}},
year = {2001},
url = {https://doi.org/10.1109/ROBOT.2001.932671},
doi = {10.1109/ROBOT.2001.932671},
timestamp = {Mon, 22 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icra/DonaldBKL01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcai/Bailey-KelloggR01,
author = {Christopher Bailey{-}Kellogg and
Naren Ramakrishnan},
editor = {Bernhard Nebel},
title = {Ambiguity-Directed Sampling for Qualitative Analysis of Sparse Data
from Spatially-Distributed Physical Systems},
booktitle = {Proceedings of the Seventeenth International Joint Conference on Artificial
Intelligence, {IJCAI} 2001, Seattle, Washington, USA, August 4-10,
2001},
pages = {43--50},
publisher = {Morgan Kaufmann},
year = {2001},
timestamp = {Tue, 20 Aug 2019 16:18:14 +0200},
biburl = {https://dblp.org/rec/conf/ijcai/Bailey-KelloggR01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/Bailey-KelloggWKBBD00,
author = {Christopher Bailey{-}Kellogg and
Alik Widge and
John J. Kelley and
Marcelo J. Berardi and
John H. Bushweller and
Bruce Randall Donald},
title = {The {NOESY} Jigsaw: Automated Protein Secondary Structure and Main-Chain
Assignment from Sparse, Unassigned {NMR} Data},
journal = {J. Comput. Biol.},
volume = {7},
number = {3-4},
pages = {537--558},
year = {2000},
url = {https://doi.org/10.1089/106652700750050934},
doi = {10.1089/106652700750050934},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/Bailey-KelloggWKBBD00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/Bailey-KelloggKSD00,
author = {Christopher Bailey{-}Kellogg and
John J. Kelley and
Clifford Stein and
Bruce Randall Donald},
editor = {Philip E. Bourne and
Michael Gribskov and
Russ B. Altman and
Nancy Jensen and
Debra A. Hope and
Thomas Lengauer and
Julie C. Mitchell and
Eric D. Scheeff and
Chris Smith and
Shawn Strande and
Helge Weissig},
title = {Reducing Mass Degeneracy in {SAR} by {MS} by Stable Isotopic Labeling},
booktitle = {Proceedings of the Eighth International Conference on Intelligent
Systems for Molecular Biology, August 19-23, 2000, La Jolla / San
Diego, CA, {USA}},
pages = {13--24},
publisher = {{AAAI}},
year = {2000},
url = {http://www.aaai.org/Library/ISMB/2000/ismb00-002.php},
timestamp = {Mon, 17 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/Bailey-KelloggKSD00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/Bailey-KelloggWKBBD00,
author = {Christopher Bailey{-}Kellogg and
Alik Widge and
John J. Kelley and
Marcelo J. Berardi and
John H. Bushweller and
Bruce Randall Donald},
editor = {Ron Shamir and
Satoru Miyano and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {The {NOESY} jigsaw: automated protein secondary structure and main-chain
assignment from sparse, unassigned {NMR} data},
booktitle = {Proceedings of the Fourth Annual International Conference on Computational
Molecular Biology, {RECOMB} 2000, Tokyo, Japan, April 8-11, 2000},
pages = {33--44},
publisher = {{ACM}},
year = {2000},
url = {https://doi.org/10.1145/332306.332323},
doi = {10.1145/332306.332323},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/Bailey-KelloggWKBBD00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ngc/ZhaoBHO99,
author = {Feng Zhao and
Christopher Bailey{-}Kellogg and
Xingang Huang and
Iv{\'{a}}n Ord{\'{o}}{\~{n}}ez},
title = {Intelligent Simulation Tools for Mining Large Scientific Data Sets},
journal = {New Gener. Comput.},
volume = {17},
number = {4},
pages = {333--347},
year = {1999},
url = {https://doi.org/10.1007/BF03037240},
doi = {10.1007/BF03037240},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ngc/ZhaoBHO99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/Bailey-KelloggZ99,
author = {Christopher Bailey{-}Kellogg and
Feng Zhao},
editor = {Jim Hendler and
Devika Subramanian},
title = {Influence-Based Model Decomposition},
booktitle = {Proceedings of the Sixteenth National Conference on Artificial Intelligence
and Eleventh Conference on Innovative Applications of Artificial Intelligence,
July 18-22, 1999, Orlando, Florida, {USA}},
pages = {402--409},
publisher = {{AAAI} Press / The {MIT} Press},
year = {1999},
url = {http://www.aaai.org/Library/AAAI/1999/aaai99-058.php},
timestamp = {Tue, 05 Sep 2023 09:10:47 +0200},
biburl = {https://dblp.org/rec/conf/aaai/Bailey-KelloggZ99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/Bailey-KelloggZ98,
author = {Christopher Bailey{-}Kellogg and
Feng Zhao},
editor = {Jack Mostow and
Chuck Rich},
title = {Qualitative Analysis of Distributed Physical Systems with Applications
to Control Synthesis},
booktitle = {Proceedings of the Fifteenth National Conference on Artificial Intelligence
and Tenth Innovative Applications of Artificial Intelligence Conference,
{AAAI} 98, {IAAI} 98, July 26-30, 1998, Madison, Wisconsin, {USA}},
pages = {232--239},
publisher = {{AAAI} Press / The {MIT} Press},
year = {1998},
url = {http://www.aaai.org/Library/AAAI/1998/aaai98-032.php},
timestamp = {Tue, 05 Sep 2023 09:10:47 +0200},
biburl = {https://dblp.org/rec/conf/aaai/Bailey-KelloggZ98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/Bailey-KelloggZY96,
author = {Christopher Bailey{-}Kellogg and
Feng Zhao and
Kenneth Yip},
editor = {William J. Clancey and
Daniel S. Weld},
title = {Spatial Aggregation: Language and Applications},
booktitle = {Proceedings of the Thirteenth National Conference on Artificial Intelligence
and Eighth Innovative Applications of Artificial Intelligence Conference,
{AAAI} 96, {IAAI} 96, Portland, Oregon, USA, August 4-8, 1996, Volume
1},
pages = {517--522},
publisher = {{AAAI} Press / The {MIT} Press},
year = {1996},
url = {http://www.aaai.org/Library/AAAI/1996/aaai96-077.php},
timestamp = {Mon, 04 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aaai/Bailey-KelloggZY96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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