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ORCIDBibTeX records: Alan R. Aronson
@article{DBLP:journals/jamia/LuASD19,
author = {Chris J. Lu and
Alan R. Aronson and
Sonya E. Shooshan and
Dina Demner{-}Fushman},
title = {Spell checker for consumer language (CSpell)},
journal = {J. Am. Medical Informatics Assoc.},
volume = {26},
number = {3},
pages = {211--218},
year = {2019},
url = {https://doi.org/10.1093/jamia/ocy171},
doi = {10.1093/JAMIA/OCY171},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/LuASD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/Demner-FushmanM18,
author = {Dina Demner{-}Fushman and
James G. Mork and
Willie J. Rogers and
Sonya E. Shooshan and
Laritza M. Rodriguez and
Alan R. Aronson},
title = {Finding medication doses in the literature},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t004-1.4263758/t004-1.4263759/2976120-1.4264018/2975720-1.4264015},
timestamp = {Wed, 17 Apr 2024 11:47:15 +0200},
biburl = {https://dblp.org/rec/conf/amia/Demner-FushmanM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LangMDA18,
author = {Fran{\c{c}}ois{-}Michel Lang and
James G. Mork and
Dina Demner{-}Fushman and
Alan R. Aronson},
title = {Increasing {UMLS} Coverage and Reducing Ambiguity via Automated Creation
of Synonymous Terms},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t007-1.4262189/t007-1.4262190/2977336-1.4262752/2974790-1.4262749},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/LangMDA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/MorkAD17,
author = {James G. Mork and
Alan R. Aronson and
Dina Demner{-}Fushman},
title = {12 years on - Is the {NLM} medical text indexer still useful and relevant?},
journal = {J. Biomed. Semant.},
volume = {8},
number = {1},
pages = {8:1--8:10},
year = {2017},
url = {https://doi.org/10.1186/s13326-017-0113-5},
doi = {10.1186/S13326-017-0113-5},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/MorkAD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/Demner-FushmanR17,
author = {Dina Demner{-}Fushman and
Willie J. Rogers and
Alan R. Aronson},
title = {MetaMap Lite: an evaluation of a new Java implementation of MetaMap},
journal = {J. Am. Medical Informatics Assoc.},
volume = {24},
number = {4},
pages = {841--844},
year = {2017},
url = {https://doi.org/10.1093/jamia/ocw177},
doi = {10.1093/JAMIA/OCW177},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/Demner-FushmanR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YepesPCMA15,
author = {Antonio Jimeno{-}Yepes and
Laura Plaza and
Jorge Carrillo de Albornoz and
James G. Mork and
Alan R. Aronson},
title = {Feature engineering for {MEDLINE} citation categorization with MeSH},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {113:1--113:12},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0539-7},
doi = {10.1186/S12859-015-0539-7},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YepesPCMA15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/HanauerSZMSAR14,
author = {David A. Hanauer and
Mohammed Saeed and
Kai Zheng and
Qiaozhu Mei and
Kerby Shedden and
Alan R. Aronson and
Naren Ramakrishnan},
title = {Applying MetaMap to Medline for identifying novel associations in
a large clinical dataset: a feasibility analysis},
journal = {J. Am. Medical Informatics Assoc.},
volume = {21},
number = {5},
pages = {925--937},
year = {2014},
url = {https://doi.org/10.1136/amiajnl-2014-002767},
doi = {10.1136/AMIAJNL-2014-002767},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/HanauerSZMSAR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MorkDSA14,
author = {James G. Mork and
Dina Demner{-}Fushman and
Susan Schmidt and
Alan R. Aronson},
title = {Vocabulary Density Method for Customized Indexing of {MEDLINE} Journals},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-005-1.1543914/f-005-1.1543915/a-450-1.1544321/a-451-1.1544318},
timestamp = {Wed, 17 Apr 2024 11:47:48 +0200},
biburl = {https://dblp.org/rec/conf/amia/MorkDSA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/OsborneAC14,
author = {Richard Osborne and
Alan R. Aronson and
Kevin Bretonnel Cohen},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
Jun'ichi Tsujii},
title = {A repository of semantic types in the {MIMIC} {II} database clinical
notes},
booktitle = {Proceedings of BioNLP, Baltimore, Maryland, USA, BioNLP@ACL 2014,
June 27-28, 2014},
pages = {93--97},
publisher = {Association for Computational Linguistics},
year = {2014},
url = {https://doi.org/10.3115/v1/W14-3414},
doi = {10.3115/V1/W14-3414},
timestamp = {Fri, 06 Aug 2021 00:41:22 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/OsborneAC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/MorkDSA14,
author = {James G. Mork and
Dina Demner{-}Fushman and
Susan Schmidt and
Alan R. Aronson},
editor = {Linda Cappellato and
Nicola Ferro and
Martin Halvey and
Wessel Kraaij},
title = {Recent Enhancements to the {NLM} Medical Text Indexer},
booktitle = {Working Notes for {CLEF} 2014 Conference, Sheffield, UK, September
15-18, 2014},
series = {{CEUR} Workshop Proceedings},
volume = {1180},
pages = {1328--1336},
publisher = {CEUR-WS.org},
year = {2014},
url = {https://ceur-ws.org/Vol-1180/CLEF2014wn-QA-MorkEt2014.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:41 +0100},
biburl = {https://dblp.org/rec/conf/clef/MorkDSA14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Jimeno-YepesSMA13,
author = {Antonio Jimeno{-}Yepes and
J. Caitlin Sticco and
James G. Mork and
Alan R. Aronson},
title = {GeneRIF indexing: sentence selection based on machine learning},
journal = {{BMC} Bioinform.},
volume = {14},
pages = {171},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-171},
doi = {10.1186/1471-2105-14-171},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Jimeno-YepesSMA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Jimeno-YepesPMAD13,
author = {Antonio Jos{\'{e}} Jimeno{-}Yepes and
Laura Plaza and
James G. Mork and
Alan R. Aronson and
Alberto D{\'{\i}}az},
title = {MeSH indexing based on automatically generated summaries},
journal = {{BMC} Bioinform.},
volume = {14},
pages = {208},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-208},
doi = {10.1186/1471-2105-14-208},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Jimeno-YepesPMAD13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/Demner-FushmanMA13,
author = {Dina Demner{-}Fushman and
James G. Mork and
Alan R. Aronson},
title = {Mining {MEDLINE} for problems associated with vitamin {D}},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-05-1.583941/f-005-1.583942/a-100-1.584255/a-104-1.584250},
timestamp = {Wed, 17 Apr 2024 11:47:55 +0200},
biburl = {https://dblp.org/rec/conf/amia/Demner-FushmanMA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/Jimeno-YepesMDA13,
author = {Antonio Jimeno{-}Yepes and
James G. Mork and
Dina Demner{-}Fushman and
Alan R. Aronson},
title = {Comparison and combination of several MeSH indexing approaches},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-05-1.583941/f-005-1.583942/a-226-1.584146/a-234-1.584141},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/Jimeno-YepesMDA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/Jimeno-YepesMA13,
author = {Antonio Jimeno{-}Yepes and
James G. Mork and
Alan R. Aronson},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
John Pestian and
Junichi Tsujii},
title = {Using the Argumentative Structure of Scientific Literature to Improve
Information Access},
booktitle = {Proceedings of the 2013 Workshop on Biomedical Natural Language Processing,
BioNLP@ACL 2013, Sofia, Bulgaria, August 8, 2013},
pages = {102--110},
publisher = {Association for Computational Linguistics},
year = {2013},
url = {https://aclanthology.org/W13-1913/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/Jimeno-YepesMA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/Jimeno-YepesMA13,
author = {Antonio Jimeno{-}Yepes and
James G. Mork and
Alan R. Aronson},
editor = {Axel{-}Cyrille Ngonga Ngomo and
George Paliouras},
title = {Identifying Publication Types Using Machine Learning},
booktitle = {Proceedings of the first Workshop on Bio-Medical Semantic Indexing
and Question Answering, a Post-Conference Workshop of Conference and
Labs of the Evaluation Forum 2013 {(CLEF} 2013) , Valencia, Spain,
September 27th, 2013},
series = {{CEUR} Workshop Proceedings},
volume = {1094},
publisher = {CEUR-WS.org},
year = {2013},
url = {https://ceur-ws.org/Vol-1094/bioasq2013\_submission\_2.pdf},
timestamp = {Mon, 26 Jun 2023 20:45:18 +0200},
biburl = {https://dblp.org/rec/conf/clef/Jimeno-YepesMA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/MorkJA13,
author = {James G. Mork and
Antonio Jimeno{-}Yepes and
Alan R. Aronson},
editor = {Axel{-}Cyrille Ngonga Ngomo and
George Paliouras},
title = {The {NLM} Medical Text Indexer System for Indexing Biomedical Literature},
booktitle = {Proceedings of the first Workshop on Bio-Medical Semantic Indexing
and Question Answering, a Post-Conference Workshop of Conference and
Labs of the Evaluation Forum 2013 {(CLEF} 2013) , Valencia, Spain,
September 27th, 2013},
series = {{CEUR} Workshop Proceedings},
volume = {1094},
publisher = {CEUR-WS.org},
year = {2013},
url = {https://ceur-ws.org/Vol-1094/bioasq2013\_submission\_3.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/clef/MorkJA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcse/Jimeno-YepesMDA12,
author = {Antonio Jimeno{-}Yepes and
James G. Mork and
Dina Demner{-}Fushman and
Alan R. Aronson},
title = {A One-Size-Fits-All Indexing Method Does Not Exist: Automatic Selection
Based on Meta-Learning},
journal = {J. Comput. Sci. Eng.},
volume = {6},
number = {2},
pages = {151--160},
year = {2012},
url = {https://doi.org/10.5626/JCSE.2012.6.2.151},
doi = {10.5626/JCSE.2012.6.2.151},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcse/Jimeno-YepesMDA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaaifs/Jimeno-YepesA12,
author = {Antonio Jimeno{-}Yepes and
Alan R. Aronson},
title = {Integration of {UMLS} and {MEDLINE} in Unsupervised Word Sense Disambiguation},
booktitle = {Information Retrieval and Knowledge Discovery in Biomedical Text,
Papers from the 2012 {AAAI} Fall Symposium, Arlington, Virginia, USA,
November 2-4, 2012},
series = {{AAAI} Technical Report},
volume = {{FS-12-05}},
publisher = {{AAAI}},
year = {2012},
url = {http://www.aaai.org/ocs/index.php/FSS/FSS12/paper/view/5569},
timestamp = {Tue, 08 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/aaaifs/Jimeno-YepesA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ihi/Jimeno-YepesA12,
author = {Antonio Jimeno{-}Yepes and
Alan R. Aronson},
editor = {Gang Luo and
Jiming Liu and
Christopher C. Yang},
title = {Knowledge-based and knowledge-lean methods combined in unsupervised
word sense disambiguation},
booktitle = {{ACM} International Health Informatics Symposium, {IHI} '12, Miami,
FL, USA, January 28-30, 2012},
pages = {733--736},
publisher = {{ACM}},
year = {2012},
url = {https://doi.org/10.1145/2110363.2110449},
doi = {10.1145/2110363.2110449},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ihi/Jimeno-YepesA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ihi/YepesMWDA12,
author = {Antonio Jimeno{-}Yepes and
James G. Mork and
Bartlomiej Wilkowski and
Dina Demner{-}Fushman and
Alan R. Aronson},
editor = {Gang Luo and
Jiming Liu and
Christopher C. Yang},
title = {{MEDLINE} MeSH indexing: lessons learned from machine learning and
future directions},
booktitle = {{ACM} International Health Informatics Symposium, {IHI} '12, Miami,
FL, USA, January 28-30, 2012},
pages = {737--742},
publisher = {{ACM}},
year = {2012},
url = {https://doi.org/10.1145/2110363.2110450},
doi = {10.1145/2110363.2110450},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ihi/YepesMWDA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/Demner-FushmanA12,
author = {Dina Demner{-}Fushman and
Swapna Abhyankar and
Antonio Jimeno{-}Yepes and
Russell F. Loane and
Fran{\c{c}}ois{-}Michel Lang and
James G. Mork and
Nicolas Ide and
Alan R. Aronson},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {{NLM} at {TREC} 2012 Medical Records Track},
booktitle = {Proceedings of The Twenty-First Text REtrieval Conference, {TREC}
2012, Gaithersburg, Maryland, USA, November 6-9, 2012},
series = {{NIST} Special Publication},
volume = {500-298},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2012},
url = {http://trec.nist.gov/pubs/trec21/papers/NLM.medical.final.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/Demner-FushmanA12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Jimeno-YepesMA11,
author = {Antonio Jos{\'{e}} Jimeno{-}Yepes and
Bridget T. McInnes and
Alan R. Aronson},
title = {Exploiting MeSH indexing in {MEDLINE} to generate a data set for word
sense disambiguation},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {223},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-223},
doi = {10.1186/1471-2105-12-223},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Jimeno-YepesMA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PlazaJDA11,
author = {Laura Plaza and
Antonio Jos{\'{e}} Jimeno{-}Yepes and
Alberto D{\'{\i}}az and
Alan R. Aronson},
title = {Studying the correlation between different word sense disambiguation
methods and summarization effectiveness in biomedical texts},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {355},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-355},
doi = {10.1186/1471-2105-12-355},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/PlazaJDA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Jimeno-YepesMA11a,
author = {Antonio Jimeno{-}Yepes and
Bridget T. McInnes and
Alan R. Aronson},
title = {Collocation analysis for {UMLS} knowledge-based word sense disambiguation},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-3}},
pages = {S4},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S3-S4},
doi = {10.1186/1471-2105-12-S3-S4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Jimeno-YepesMA11a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/Jimeno-YepesA11,
author = {Antonio Jimeno{-}Yepes and
Alan R. Aronson},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
John Pestian and
Jun'ichi Tsujii and
Bonnie L. Webber},
title = {Self-training and co-training in biomedical word sense disambiguation},
booktitle = {Proceedings of the 2011 Workshop on Biomedical Natural Language Processing,
BioNLP@ACL, Portland, Oregon, USA, June 23-24, 2011},
pages = {182--183},
publisher = {Association for Computational Linguistics},
year = {2011},
url = {https://aclanthology.org/W11-0223/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/Jimeno-YepesA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/Demner-FushmanAJLRLIAA11,
author = {Dina Demner{-}Fushman and
Swapna Abhyankar and
Antonio Jimeno{-}Yepes and
Russell F. Loane and
Bastien Rance and
Fran{\c{c}}ois{-}Michel Lang and
Nicholas C. Ide and
Emilia Apostolova and
Alan R. Aronson},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {A Knowledge-Based Approach to Medical Records Retrieval},
booktitle = {Proceedings of The Twentieth Text REtrieval Conference, {TREC} 2011,
Gaithersburg, Maryland, USA, November 15-18, 2011},
series = {{NIST} Special Publication},
volume = {500-296},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2011},
url = {http://trec.nist.gov/pubs/trec20/papers/NLM.medical.pdf},
timestamp = {Wed, 03 Feb 2021 08:31:23 +0100},
biburl = {https://dblp.org/rec/conf/trec/Demner-FushmanAJLRLIAA11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YepesA10,
author = {Antonio Jimeno{-}Yepes and
Alan R. Aronson},
title = {Knowledge-based biomedical word sense disambiguation: comparison of
approaches},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {569},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-569},
doi = {10.1186/1471-2105-11-569},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YepesA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/AronsonL10,
author = {Alan R. Aronson and
Fran{\c{c}}ois{-}Michel Lang},
title = {An overview of MetaMap: historical perspective and recent advances},
journal = {J. Am. Medical Informatics Assoc.},
volume = {17},
number = {3},
pages = {229--236},
year = {2010},
url = {https://doi.org/10.1136/jamia.2009.002733},
doi = {10.1136/JAMIA.2009.002733},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/AronsonL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/MorkBDDLLNPSA10,
author = {James G. Mork and
Olivier Bodenreider and
Dina Demner{-}Fushman and
Rezarta Islamaj Dogan and
Fran{\c{c}}ois{-}Michel Lang and
Zhiyong Lu and
Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and
Lee B. Peters and
Sonya E. Shooshan and
Alan R. Aronson},
title = {Extracting Rx information from clinical narrative},
journal = {J. Am. Medical Informatics Assoc.},
volume = {17},
number = {5},
pages = {536--539},
year = {2010},
url = {https://doi.org/10.1136/jamia.2010.003970},
doi = {10.1136/JAMIA.2010.003970},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/MorkBDDLLNPSA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/Demner-FushmanMSA10,
author = {Dina Demner{-}Fushman and
James G. Mork and
Sonya E. Shooshan and
Alan R. Aronson},
title = {{UMLS} content views appropriate for {NLP} processing of the biomedical
literature vs. clinical text},
journal = {J. Biomed. Informatics},
volume = {43},
number = {4},
pages = {587--594},
year = {2010},
url = {https://doi.org/10.1016/j.jbi.2010.02.005},
doi = {10.1016/J.JBI.2010.02.005},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/Demner-FushmanMSA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pdln/Jimeno-YepesA10,
author = {Antonio Jimeno{-}Yepes and
Alan R. Aronson},
title = {Improving an automatically extracted corpus for {UMLS} Metathesaurus
word sense disambiguation},
journal = {Proces. del Leng. Natural},
volume = {45},
pages = {239--242},
year = {2010},
url = {http://journal.sepln.org/sepln/ojs/ojs/index.php/pln/article/view/806},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/pdln/Jimeno-YepesA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmla/YepesA10,
author = {Antonio Jimeno{-}Yepes and
Alan R. Aronson},
editor = {Sorin Draghici and
Taghi M. Khoshgoftaar and
Vasile Palade and
Witold Pedrycz and
M. Arif Wani and
Xingquan Zhu},
title = {Query Expansion for {UMLS} Metathesaurus Disambiguation Based on Automatic
Corpus Extraction},
booktitle = {The Ninth International Conference on Machine Learning and Applications,
{ICMLA} 2010, Washington, DC, USA, 12-14 December 2010},
pages = {965--968},
publisher = {{IEEE} Computer Society},
year = {2010},
url = {https://doi.org/10.1109/ICMLA.2010.154},
doi = {10.1109/ICMLA.2010.154},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icmla/YepesA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NeveolMA09,
author = {Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and
James G. Mork and
Alan R. Aronson},
title = {Comment on 'MeSH-up: effective MeSH text classification for improved
document retrieval'},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2770--2771},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp483},
doi = {10.1093/BIOINFORMATICS/BTP483},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NeveolMA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jasis/NeveolDDGA09,
author = {Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and
Thomas Martin Deserno and
St{\'{e}}fan Jacques Darmoni and
Mark Oliver G{\"{u}}ld and
Alan R. Aronson},
title = {Natural language processing versus content-based image analysis for
medical document retrieval},
journal = {J. Assoc. Inf. Sci. Technol.},
volume = {60},
number = {1},
pages = {123--134},
year = {2009},
url = {https://doi.org/10.1002/asi.20955},
doi = {10.1002/ASI.20955},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jasis/NeveolDDGA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/NeveolSHMA09,
author = {Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and
Sonya E. Shooshan and
Susanne M. Humphrey and
James G. Mork and
Alan R. Aronson},
title = {A recent advance in the automatic indexing of the biomedical literature},
journal = {J. Biomed. Informatics},
volume = {42},
number = {5},
pages = {814--823},
year = {2009},
url = {https://doi.org/10.1016/j.jbi.2008.12.007},
doi = {10.1016/J.JBI.2008.12.007},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/NeveolSHMA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/AronsonMNSD08,
author = {Alan R. Aronson and
James G. Mork and
Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and
Sonya E. Shooshan and
Dina Demner{-}Fushman},
title = {Methodology for Creating {UMLS} Content Views Appropriate for Biomedical
Natural Language Processing},
booktitle = {{AMIA} 2008, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 8-12, 2008},
publisher = {{AMIA}},
year = {2008},
url = {https://knowledge.amia.org/amia-55142-a2008a-1.625176/t-001-1.626020/f-001-1.626021/a-004-1.626520/a-005-1.626517},
timestamp = {Wed, 17 Apr 2024 11:48:12 +0200},
biburl = {https://dblp.org/rec/conf/amia/AronsonMNSD08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/asist/RuizAH08,
author = {Miguel E. Ruiz and
Alan R. Aronson and
Marjorie M. K. Hlava},
title = {Adoption and evaluation issues of automatic and computer aided indexing
systems},
booktitle = {People Transforming Information - Information Transforming People
- Proceedings of the 71st ASIS{\&}T Annual Meeting, {ASIST} 2008,
Columbus, OH, USA, October 24-29, 2008},
series = {Proc. Assoc. Inf. Sci. Technol.},
volume = {45},
number = {1},
pages = {1--4},
publisher = {Wiley},
year = {2008},
url = {https://doi.org/10.1002/meet.2008.1450450143},
doi = {10.1002/MEET.2008.1450450143},
timestamp = {Fri, 21 Jan 2022 13:55:35 +0100},
biburl = {https://dblp.org/rec/conf/asist/RuizAH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/NeveolSMA07,
author = {Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and
Sonya E. Shooshan and
James G. Mork and
Alan R. Aronson},
title = {Fine-Grained Indexing of the Biomedical Literature: MeSH Subheading
Attachment for a {MEDLINE} Indexing Tool},
booktitle = {{AMIA} 2007, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 10-14, 2007},
publisher = {{AMIA}},
year = {2007},
url = {https://knowledge.amia.org/amia-55142-a2007a-1.623841/t-001-1.624626/f-001-1.624627/a-105-1.624813/a-106-1.624810},
timestamp = {Wed, 17 Apr 2024 11:48:14 +0200},
biburl = {https://dblp.org/rec/conf/amia/NeveolSMA07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/AronsonBDFLMNPR07,
author = {Alan R. Aronson and
Olivier Bodenreider and
Dina Demner{-}Fushman and
Kin Wah Fung and
Vivian K. Lee and
James G. Mork and
Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and
Lee B. Peters and
Willie J. Rogers},
editor = {K. Bretonnel Cohen and
Dina Demner{-}Fushman and
Carol Friedman and
Lynette Hirschman and
John Pestian},
title = {From indexing the biomedical literature to coding clinical text: experience
with {MTI} and machine learning approaches},
booktitle = {Biological, translational, and clinical language processing, BioNLP@ACL
2007, Prague, Czech Republic, June 29, 2007},
pages = {105--112},
publisher = {Association for Computational Linguistics},
year = {2007},
url = {https://aclanthology.org/W07-1014/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/AronsonBDFLMNPR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/NeveolMA07,
author = {Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and
James G. Mork and
Alan R. Aronson},
editor = {K. Bretonnel Cohen and
Dina Demner{-}Fushman and
Carol Friedman and
Lynette Hirschman and
John Pestian},
title = {Automatic Indexing of Specialized Documents: Using Generic vs. Domain-Specific
Document Representations},
booktitle = {Biological, translational, and clinical language processing, BioNLP@ACL
2007, Prague, Czech Republic, June 29, 2007},
pages = {183--190},
publisher = {Association for Computational Linguistics},
year = {2007},
url = {https://aclanthology.org/W07-1026/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/NeveolMA07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/FungBAHS07,
author = {Kin Wah Fung and
Olivier Bodenreider and
Alan R. Aronson and
William T. Hole and
Suresh Srinivasan},
editor = {Klaus A. Kuhn and
James R. Warren and
Tze{-}Yun Leong},
title = {Combining Lexical and Semantic Methods of Inter-terminology Mapping
Using the {UMLS}},
booktitle = {{MEDINFO} 2007 - Proceedings of the 12th World Congress on Health
(Medical) Informatics - Building Sustainable Health Systems, 20-24
August, 2007, Brisbane, Australia},
series = {Studies in Health Technology and Informatics},
volume = {129},
pages = {605--609},
publisher = {{IOS} Press},
year = {2007},
url = {https://doi.org/10.3233/978-1-58603-774-1-605},
doi = {10.3233/978-1-58603-774-1-605},
timestamp = {Mon, 22 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/FungBAHS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/RuchGGLTVA07,
author = {Patrick Ruch and
Antoine Geissb{\"{u}}hler and
Julien Gobeill and
Fr{\'{e}}d{\'{e}}ric Lisacek and
Imad Tbahriti and
Anne{-}Lise Veuthey and
Alan R. Aronson},
editor = {Klaus A. Kuhn and
James R. Warren and
Tze{-}Yun Leong},
title = {Using Discourse Analysis to Improve Text Categorization in {MEDLINE}},
booktitle = {{MEDINFO} 2007 - Proceedings of the 12th World Congress on Health
(Medical) Informatics - Building Sustainable Health Systems, 20-24
August, 2007, Brisbane, Australia},
series = {Studies in Health Technology and Informatics},
volume = {129},
pages = {710--715},
publisher = {{IOS} Press},
year = {2007},
url = {https://doi.org/10.3233/978-1-58603-774-1-710},
doi = {10.3233/978-1-58603-774-1-710},
timestamp = {Mon, 22 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/RuchGGLTVA07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/NeveolSHRA07,
author = {Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and
Sonya E. Shooshan and
Susanne M. Humphrey and
Thomas C. Rindflesch and
Alan R. Aronson},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Multiple Approaches to Fine-Grained Indexing of the Biomedical Literature},
booktitle = {Biocomputing 2007, Proceedings of the Pacific Symposium, Maui, Hawaii,
USA, 3-7 January 2007},
pages = {292--303},
publisher = {World Scientific},
year = {2007},
url = {http://psb.stanford.edu/psb-online/proceedings/psb07/neveol.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/NeveolSHRA07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/Demner-FushmanHILMRRSWA07,
author = {Dina Demner{-}Fushman and
Susanne M. Humphrey and
Nicholas C. Ide and
Russell F. Loane and
James G. Mork and
Patrick Ruch and
Miguel E. Ruiz and
Lawrence H. Smith and
W. John Wilbur and
Alan R. Aronson},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Combining Resources to Find Answers to Biomedical Questions},
booktitle = {Proceedings of The Sixteenth Text REtrieval Conference, {TREC} 2007,
Gaithersburg, Maryland, USA, November 5-9, 2007},
series = {{NIST} Special Publication},
volume = {500-274},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2007},
url = {http://trec.nist.gov/pubs/trec16/papers/nlm.geo.final.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/Demner-FushmanHILMRRSWA07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/RuchTGA06,
author = {Patrick Ruch and
Imad Tbahriti and
Julien Gobeill and
Alan R. Aronson},
editor = {Nicoletta Calzolari and
Claire Cardie and
Pierre Isabelle},
title = {Argumentative Feedback: {A} Linguistically-Motivated Term Expansion
for Information Retrieval},
booktitle = {{ACL} 2006, 21st International Conference on Computational Linguistics
and 44th Annual Meeting of the Association for Computational Linguistics,
Proceedings of the Conference, Sydney, Australia, 17-21 July 2006},
publisher = {The Association for Computer Linguistics},
year = {2006},
url = {https://aclanthology.org/P06-2087/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl/RuchTGA06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/Demner-FushmanHILSTWADRR06,
author = {Dina Demner{-}Fushman and
Susanne M. Humphrey and
Nicholas C. Ide and
Russell F. Loane and
Patrick Ruch and
Miguel E. Ruiz and
Lawrence H. Smith and
Lorraine K. Tanabe and
W. John Wilbur and
Alan R. Aronson},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Finding Relevant Passages in Scientific Articles: Fusion of Automatic
Approaches vs. an Interactive Team Effort},
booktitle = {Proceedings of the Fifteenth Text REtrieval Conference, {TREC} 2006,
Gaithersburg, Maryland, USA, November 14-17, 2006},
series = {{NIST} Special Publication},
volume = {500-272},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2006},
url = {http://trec.nist.gov/pubs/trec15/papers/nlm.geo.final.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/Demner-FushmanHILSTWADRR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/GayKA05,
author = {Clifford W. Gay and
Mehmet Kayaalp and
Alan R. Aronson},
title = {Semi-Automatic Indexing of Full Text Biomedical Articles},
booktitle = {{AMIA} 2005, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, October 22-26, 2005},
publisher = {{AMIA}},
year = {2005},
url = {https://knowledge.amia.org/amia-55142-a2005a-1.613296/t-001-1.616182/f-001-1.616183/a-054-1.616527/a-055-1.616524},
timestamp = {Wed, 17 Apr 2024 11:48:22 +0200},
biburl = {https://dblp.org/rec/conf/amia/GayKA05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/NeveolMAD05,
author = {Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and
James G. Mork and
Alan R. Aronson and
St{\'{e}}fan Jacques Darmoni},
title = {Evaluation of French and English MeSH Indexing Systems with a Parallel
Corpus},
booktitle = {{AMIA} 2005, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, October 22-26, 2005},
publisher = {{AMIA}},
year = {2005},
url = {https://knowledge.amia.org/amia-55142-a2005a-1.613296/t-001-1.616182/f-001-1.616183/a-113-1.616350/a-114-1.616347},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/NeveolMAD05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/AronsonDHLRRSTWL05,
author = {Alan R. Aronson and
Dina Demner{-}Fushman and
Susanne M. Humphrey and
Jimmy Lin and
Patrick Ruch and
Miguel E. Ruiz and
Lawrence H. Smith and
Lorraine K. Tanabe and
W. John Wilbur and
Hongfang Liu},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Fusion of Knowledge-Intensive and Statistical Approaches for Retrieving
and Annotating Textual Genomics Documents},
booktitle = {Proceedings of the Fourteenth Text REtrieval Conference, {TREC} 2005,
Gaithersburg, Maryland, USA, November 15-18, 2005},
series = {{NIST} Special Publication},
volume = {500-266},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2005},
url = {http://trec.nist.gov/pubs/trec14/papers/nlm-umd.geo.pdf},
timestamp = {Fri, 27 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/trec/AronsonDHLRRSTWL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/AronsonMGHR04,
author = {Alan R. Aronson and
James G. Mork and
Clifford W. Gay and
Susanne M. Humphrey and
Willie J. Rogers},
editor = {Marius Fieschi and
Enrico W. Coiera and
Yu{-}Chuan (Jack) Li},
title = {The {NLM} Indexing Initiative's Medical Text Indexer},
booktitle = {{MEDINFO} 2004 - Proceedings of the 11th World Congress on Medical
Informatics, San Francisco, California, USA, September 7-11, 2004},
series = {Studies in Health Technology and Informatics},
volume = {107},
pages = {268--272},
publisher = {{IOS} Press},
year = {2004},
url = {https://doi.org/10.3233/978-1-60750-949-3-268},
doi = {10.3233/978-1-60750-949-3-268},
timestamp = {Wed, 17 Aug 2022 16:35:51 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/AronsonMGHR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/KimAMCL04,
author = {George R. Kim and
Alan R. Aronson and
James G. Mork and
Bernard A. Cohen and
Christoph U. Lehmann},
editor = {Marius Fieschi and
Enrico W. Coiera and
Yu{-}Chuan (Jack) Li},
title = {Application of a Medical Text Indexer to an Online Dermatology Atlas},
booktitle = {{MEDINFO} 2004 - Proceedings of the 11th World Congress on Medical
Informatics, San Francisco, California, USA, September 7-11, 2004},
series = {Studies in Health Technology and Informatics},
volume = {107},
pages = {287--291},
publisher = {{IOS} Press},
year = {2004},
url = {https://doi.org/10.3233/978-1-60750-949-3-287},
doi = {10.3233/978-1-60750-949-3-287},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/KimAMCL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/AronsonHIKLMSTWXDL04,
author = {Alan R. Aronson and
Susanne M. Humphrey and
Nicholas C. Ide and
Won Kim and
Russell F. Loane and
James G. Mork and
Lawrence H. Smith and
Lorraine K. Tanabe and
W. John Wilbur and
Natalie Xie and
Dina Demner{-}Fushman and
Hongfang Liu},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Knowledge-Intensive and Statistical Approaches to the Retrieval and
Annotation of Genomics {MEDLINE} Citations},
booktitle = {Proceedings of the Thirteenth Text REtrieval Conference, {TREC} 2004,
Gaithersburg, Maryland, USA, November 16-19, 2004},
series = {{NIST} Special Publication},
volume = {500-261},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2004},
url = {http://trec.nist.gov/pubs/trec13/papers/nlm-umd-ul.geo.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/AronsonHIKLMSTWXDL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/WeeberVKBAM03,
author = {Marc Weeber and
Rein Vos and
Henny Klein and
Lolkje T. W. de Jong{-}van den Berg and
Alan R. Aronson and
Grietje Molema},
title = {Case Report: Generating Hypotheses by Discovering Implicit Associations
in the Literature: {A} Case Report of a Search for New Potential Therapeutic
Uses for Thalidomide},
journal = {J. Am. Medical Informatics Assoc.},
volume = {10},
number = {3},
pages = {252--259},
year = {2003},
url = {https://doi.org/10.1197/jamia.M1158},
doi = {10.1197/JAMIA.M1158},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/WeeberVKBAM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/BrennanA03,
author = {Patricia Flatley Brennan and
Alan R. Aronson},
title = {Towards linking patients and clinical information: detecting {UMLS}
concepts in e-mail},
journal = {J. Biomed. Informatics},
volume = {36},
number = {4-5},
pages = {334--341},
year = {2003},
url = {https://doi.org/10.1016/j.jbi.2003.09.017},
doi = {10.1016/J.JBI.2003.09.017},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/BrennanA03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/BrowneDAM03,
author = {Allen C. Browne and
Guy Divita and
Alan R. Aronson and
Alexa T. McCray},
title = {{UMLS} Language and Vocabulary Tools: {AMIA} 2003 Open Source Expo},
booktitle = {{AMIA} 2003, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 8-12, 2003},
publisher = {{AMIA}},
year = {2003},
url = {https://knowledge.amia.org/amia-55142-a2003a-1.616734/t-002-1.618748/f-001-1.618749/a-181-1.619547/a-182-1.619544},
timestamp = {Wed, 17 Apr 2024 11:48:28 +0200},
biburl = {https://dblp.org/rec/conf/amia/BrowneDAM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MitchellAMFHW03,
author = {Joyce A. Mitchell and
Alan R. Aronson and
James G. Mork and
Lillian C. Folk and
Susanne M. Humphrey and
Janice M. Ward},
title = {Gene Indexing: Characterization and Analysis of NLM's GeneRIFs},
booktitle = {{AMIA} 2003, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 8-12, 2003},
publisher = {{AMIA}},
year = {2003},
url = {https://knowledge.amia.org/amia-55142-a2003a-1.616734/t-001-1.619623/f-001-1.619624/a-093-1.619823/a-094-1.619820},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/MitchellAMFHW03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RindfleschLHAK03,
author = {Thomas C. Rindflesch and
Bisharah Libbus and
Dimitar Hristovski and
Alan R. Aronson and
Halil Kilicoglu},
title = {Semantic Relations Asserting the Etiology of Genetic Diseases},
booktitle = {{AMIA} 2003, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 8-12, 2003},
publisher = {{AMIA}},
year = {2003},
url = {https://knowledge.amia.org/amia-55142-a2003a-1.616734/t-001-1.619623/f-001-1.619624/a-112-1.619764/a-113-1.619761},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RindfleschLHAK03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/KayaalpAHITSDLMB03,
author = {Mehmet Kayaalp and
Alan R. Aronson and
Susanne M. Humphrey and
Nicholas C. Ide and
Lorraine K. Tanabe and
Lawrence H. Smith and
Dina Demner{-}Fushman and
Russell F. Loane and
James G. Mork and
Olivier Bodenreider},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Methods for Accurate Retrieval of {MEDLINE} Citations in Functional
Genomics},
booktitle = {Proceedings of The Twelfth Text REtrieval Conference, {TREC} 2003,
Gaithersburg, Maryland, USA, November 18-21, 2003},
series = {{NIST} Special Publication},
volume = {500-255},
pages = {441--450},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2003},
url = {http://trec.nist.gov/pubs/trec12/papers/nlm.genomics.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/KayaalpAHITSDLMB03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiuAF02,
author = {Hongfang Liu and
Alan R. Aronson and
Carol Friedman},
title = {A study of abbreviations in {MEDLINE} abstracts},
booktitle = {{AMIA} 2002, American Medical Informatics Association Annual Symposium,
San Antonio, TX, USA, November 9-13, 2002},
publisher = {{AMIA}},
year = {2002},
url = {https://knowledge.amia.org/amia-55142-a2002a-1.610020/t-001-1.612667/f-001-1.612668/a-093-1.612970/a-094-1.612967},
timestamp = {Wed, 17 Apr 2024 11:48:33 +0200},
biburl = {https://dblp.org/rec/conf/amia/LiuAF02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SrinivasanRHAM02,
author = {Suresh Srinivasan and
Thomas C. Rindflesch and
William T. Hole and
Alan R. Aronson and
James G. Mork},
title = {Finding {UMLS} Metathesaurus concepts in {MEDLINE}},
booktitle = {{AMIA} 2002, American Medical Informatics Association Annual Symposium,
San Antonio, TX, USA, November 9-13, 2002},
publisher = {{AMIA}},
year = {2002},
url = {https://knowledge.amia.org/amia-55142-a2002a-1.610020/t-001-1.612667/f-001-1.612668/a-146-1.612810/a-147-1.612807},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SrinivasanRHAM02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/TanakaAW02,
author = {Len Y. Tanaka and
Alan R. Aronson and
Marc Weeber},
title = {Mining the Epidemiological Literature for Risk Factors and Incidence
Data of Kawasaki Disease},
booktitle = {{AMIA} 2002, American Medical Informatics Association Annual Symposium,
San Antonio, TX, USA, November 9-13, 2002},
publisher = {{AMIA}},
year = {2002},
url = {https://knowledge.amia.org/amia-55142-a2002a-1.610020/t-002-1.611916/f-001-1.611917/a-410-1.612013/a-411-1.612010},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/TanakaAW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/Aronson01,
author = {Alan R. Aronson},
title = {Effective mapping of biomedical text to the {UMLS} Metathesaurus:
the MetaMap program},
booktitle = {{AMIA} 2001, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 3-7, 2001},
publisher = {{AMIA}},
year = {2001},
url = {https://knowledge.amia.org/amia-55142-a2001a-1.597057/t-001-1.599654/f-001-1.599655/a-003-1.600128/a-004-1.600125},
timestamp = {Wed, 17 Apr 2024 11:48:39 +0200},
biburl = {https://dblp.org/rec/conf/amia/Aronson01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/KimAW01,
author = {Won Kim and
Alan R. Aronson and
W. John Wilbur},
title = {Automatic MeSH term assignment and quality assessment},
booktitle = {{AMIA} 2001, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 3-7, 2001},
publisher = {{AMIA}},
year = {2001},
url = {https://knowledge.amia.org/amia-55142-a2001a-1.597057/t-001-1.599654/f-001-1.599655/a-064-1.599945/a-065-1.599942},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/KimAW01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WeeberMA01,
author = {Marc Weeber and
James G. Mork and
Alan R. Aronson},
title = {Developing a test collection for biomedical word sense disambiguation},
booktitle = {{AMIA} 2001, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 3-7, 2001},
publisher = {{AMIA}},
year = {2001},
url = {https://knowledge.amia.org/amia-55142-a2001a-1.597057/t-001-1.599654/f-001-1.599655/a-150-1.599689/a-151-1.599686},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WeeberMA01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/AronsonBCHMNRW00,
author = {Alan R. Aronson and
Olivier Bodenreider and
Florence Chang and
Susanne M. Humphrey and
James G. Mork and
Stuart J. Nelson and
Thomas C. Rindflesch and
W. John Wilbur},
title = {The {NLM} Indexing Initiative},
booktitle = {{AMIA} 2000, American Medical Informatics Association Annual Symposium,
Los Angeles, CA, USA, November 4-8, 2000},
publisher = {{AMIA}},
year = {2000},
url = {https://knowledge.amia.org/amia-55142-a2000a-1.606968/t-001-1.609408/f-001-1.609409/a-003-1.609968/a-004-1.609965},
timestamp = {Wed, 17 Apr 2024 11:48:44 +0200},
biburl = {https://dblp.org/rec/conf/amia/AronsonBCHMNRW00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WeeberKAMBV00,
author = {Marc Weeber and
Henny Klein and
Alan R. Aronson and
James G. Mork and
Lolkje T. W. de Jong{-}van den Berg and
Rein Vos},
title = {Text-based discovery in biomedicine: the architecture of the DAD-system},
booktitle = {{AMIA} 2000, American Medical Informatics Association Annual Symposium,
Los Angeles, CA, USA, November 4-8, 2000},
publisher = {{AMIA}},
year = {2000},
url = {https://knowledge.amia.org/amia-55142-a2000a-1.606968/t-001-1.609408/f-001-1.609409/a-182-1.609431/a-183-1.609428},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WeeberKAMBV00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jasis/WrightNAR99,
author = {Lawrence W. Wright and
Holly K. Grossetta Nardini and
Alan R. Aronson and
Thomas C. Rindflesch},
title = {Hierarchical Concept Indexing of Full-Text Documents in the Unified
Medical Language System{\textregistered} Information Sources Map},
journal = {J. Am. Soc. Inf. Sci.},
volume = {50},
number = {6},
pages = {512--523},
year = {1999},
url = {https://doi.org/10.1002/(SICI)1097-4571(1999)50:6\&\#60;514::AID-ASI6\&\#62;3.0.CO;2-Q},
doi = {10.1002/(SICI)1097-4571(1999)50:6\&\#60;514::AID-ASI6\&\#62;3.0.CO;2-Q},
timestamp = {Wed, 13 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jasis/WrightNAR99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/BeanSRA99,
author = {Carol A. Bean and
C. R. Selden and
Thomas C. Rindflesch and
Alan R. Aronson},
title = {From Bibliography to Test Collection: Enhancing Topical Relevance
Assessment for Bibliographic Information Retrieval System Evaluation},
booktitle = {{AMIA} 1999, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 6-10, 1999},
publisher = {{AMIA}},
year = {1999},
url = {https://knowledge.amia.org/amia-55142-a1999a-1.591078/t-002-1.592771/f-001-1.592772/a-217-1.593314/a-218-1.593311},
timestamp = {Wed, 17 Apr 2024 11:48:49 +0200},
biburl = {https://dblp.org/rec/conf/amia/BeanSRA99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/NelsonADWBCMM99,
author = {Stuart J. Nelson and
Alan R. Aronson and
Tamas E. Doszkocs and
W. John Wilbur and
Olivier Bodenreider and
H. Florence Chang and
James G. Mork and
Alexa T. McCray},
title = {Automated Assignment of Medical Subject Headings},
booktitle = {{AMIA} 1999, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 6-10, 1999},
publisher = {{AMIA}},
year = {1999},
url = {https://knowledge.amia.org/amia-55142-a1999a-1.591078/t-002-1.592771/f-001-1.592772/a-322-1.592996/a-323-1.592993},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/NelsonADWBCMM99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RindfleschHA99,
author = {Thomas C. Rindflesch and
Lawrence Hunter and
Alan R. Aronson},
title = {Mining molecular binding terminology from biomedical text},
booktitle = {{AMIA} 1999, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 6-10, 1999},
publisher = {{AMIA}},
year = {1999},
url = {https://knowledge.amia.org/amia-55142-a1999a-1.591078/t-001-1.593353/f-001-1.593354/a-025-1.593892/a-026-1.593889},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RindfleschHA99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WilburHDMAB99,
author = {W. John Wilbur and
George F. Hazard Jr. and
Guy Divita and
James G. Mork and
Alan R. Aronson and
Allen C. Browne},
title = {Analysis of biomedical text for chemical names: a comparison of three
methods},
booktitle = {{AMIA} 1999, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 6-10, 1999},
publisher = {{AMIA}},
year = {1999},
url = {https://knowledge.amia.org/amia-55142-a1999a-1.591078/t-001-1.593353/f-001-1.593354/a-035-1.593862/a-036-1.593859},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WilburHDMAB99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/AronsonR97,
author = {Alan R. Aronson and
Thomas C. Rindflesch},
title = {Query expansion using the {UMLS} Metathesaurus},
booktitle = {{AMIA} 1997, American Medical Informatics Association Annual Symposium,
Nashville, TN, USA, October 25-29, 1997},
publisher = {{AMIA}},
year = {1997},
url = {https://knowledge.amia.org/amia-55142-a1997a-1.585351/t-001-1.587519/f-001-1.587520/a-096-1.587728/a-097-1.587725},
timestamp = {Wed, 17 Apr 2024 11:48:58 +0200},
biburl = {https://dblp.org/rec/conf/amia/AronsonR97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/riao/Aronson94,
author = {Alan R. Aronson},
editor = {Jean{-}Louis Funck{-}Brentano and
Frederick Seitz},
title = {Exploiting a Large Thesaurus for Information Retrieval},
booktitle = {Computer-Assisted Information Retrieval (Recherche d'Information et
ses Applications) - {RIAO} 1994, 4th International Conference, Rockefeller
University, NY, USA, October 11-13, 1994. Proceedings},
pages = {197--216},
publisher = {{CID}},
year = {1994},
url = {https://dl.acm.org/doi/10.5555/2856823.2856842},
doi = {10.5555/2856823.2856842},
timestamp = {Wed, 04 May 2022 13:02:27 +0200},
biburl = {https://dblp.org/rec/conf/riao/Aronson94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tods/JacobsAK82,
author = {Barry E. Jacobs and
Alan R. Aronson and
Anthony C. Klug},
title = {On Interpretations of Relational Languages and Solutions to the Implied
Constraint Problem},
journal = {{ACM} Trans. Database Syst.},
volume = {7},
number = {2},
pages = {291--315},
year = {1982},
url = {https://doi.org/10.1145/319702.319730},
doi = {10.1145/319702.319730},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tods/JacobsAK82.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jacm/AronsonJM80,
author = {Alan R. Aronson and
Barry E. Jacobs and
Jack Minker},
title = {A Note on Fuzzy Deduction},
journal = {J. {ACM}},
volume = {27},
number = {4},
pages = {599--603},
year = {1980},
url = {https://doi.org/10.1145/322217.322218},
doi = {10.1145/322217.322218},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jacm/AronsonJM80.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isci/CookRA76,
author = {Craig M. Cook and
Azriel Rosenfeld and
Alan R. Aronson},
title = {Grammatical inference by hill climbing},
journal = {Inf. Sci.},
volume = {10},
number = {1},
pages = {59--80},
year = {1976},
url = {https://doi.org/10.1016/0020-0255(76)90061-X},
doi = {10.1016/0020-0255(76)90061-X},
timestamp = {Sat, 27 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isci/CookRA76.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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