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2010 – 2019
- 2017
[j6]Matthias Monfort, Eileen E. M. Furlong
, Charles Girardot:
Dynamix: dynamic visualization by automatic selection of informative tracks from hundreds of genomic datasets. Bioinform. 33(14): 2194-2196 (2017)- 2016
- [j5]Charles Girardot, Jelle Scholtalbers, Sajoscha Sauer, Shu-Yi Su, Eileen E. M. Furlong:
Je, a versatile suite to handle multiplexed NGS libraries with unique molecular identifiers. BMC Bioinform. 17: 419 (2016) - [j4]Abibatou Mbodj, Eleanor Hilary Gustafson, Lucia Ciglar, Guillaume Junion, Aitor González, Charles Girardot, Laurent Perrin, Eileen E. M. Furlong, Denis Thieffry:
Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes. PLoS Comput. Biol. 12(9) (2016) - 2012
- [b1]Charles Girardot:
Déchiffrement de l'activité des séquences cis-régulatrices chez la Drosophile basé sur la localisation des facteurs de transcription et la caractérisation de l'état de la chromatine. (Deciphering enhancer activity in Drosophila based on transcription factor occupancy and chromatin state chromatin state characterization). Pierre and Marie Curie University, Paris, France, 2012 - 2010
- [j3]Antti Honkela, Charles Girardot, Eleanor Hilary Gustafson, Ya-Hsin Liu, Eileen E. M. Furlong, Neil D. Lawrence, Magnus Rattray:
Model-based method for transcription factor target identification with limited data. Proc. Natl. Acad. Sci. USA 107(17): 7793-7798 (2010)
2000 – 2009
- 2008
- [j2]Yannick Haudry, Hugo Bérubé, Ivica Letunic, Paul-Daniel Weeber, Julien Gagneur, Charles Girardot, Misha Kapushesky, Detlev Arendt, Peer Bork, Alvis Brazma, Eileen E. M. Furlong, Joachim Wittbrodt, Thorsten Henrich:
4DXpress: a database for cross-species expression pattern comparisons. Nucleic Acids Res. 36(Database-Issue): 847-853 (2008) - [c1]Yannick Haudry, Chuang Kee Ong, Laurence Ettwiller, Hugo Bérubé, Ivica Letunic, Misha Kapushesky, Paul-Daniel Weeber, Xi Wang, Julien Gagneur, Charles Girardot, Detlev Arendt, Peer Bork, Alvis Brazma, Eileen E. M. Furlong, Joachim Wittbrodt, Thorsten Henrich:
Comparing and Analysing Gene Expression Patterns Across Animal Species Using 4DXpress. APBC 2008: 373-382 - 2007
- [j1]Charles Girardot, Oleg Sklyar, Sophie Grosz, Wolfgang Huber, Eileen E. M. Furlong:
CoCo: a web application to display, store and curate ChIP-on-chip data integrated with diverse types of gene expression data. Bioinform. 23(6): 771-773 (2007)
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