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José Carbonell
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2020 – today
- 2023
- [c2]Marc Clascà
, Marta Garcia-Gasulla
, Arnau Montagud
, José Carbonell-Caballero
, Alfonso Valencia
:
Lessons Learned from a Performance Analysis and Optimization of a Multiscale Cellular Simulation. PASC 2023: 4:1-4:10 - [i1]Marc Clascà, Marta Garcia-Gasulla, Arnau Montagud, José Carbonell-Caballero, Alfonso Valencia:
Lessons learned from a performance analysis and optimization of a multiscale cellular simulation. CoRR abs/2306.11544 (2023)
2010 – 2019
- 2019
- [j14]Alicia Amadoz
, Marta R. Hidalgo
, Cankut Çubuk
, José Carbonell-Caballero
, Joaquín Dopazo
:
A comparison of mechanistic signaling pathway activity analysis methods. Briefings Bioinform. 20(5): 1655-1668 (2019) - 2017
- [j13]José Carbonell-Caballero
, Alicia Amadoz
, Roberto Alonso, Marta R. Hidalgo
, Cankut Çubuk, David V. Conesa
, Antonio López-Quílez
, Joaquín Dopazo
:
Reference genome assessment from a population scale perspective: an accurate profile of variability and noise. Bioinform. 33(22): 3511-3517 (2017) - 2016
- [j12]Francisco Salavert, Marta R. Hidalgo
, Alicia Amadoz
, Cankut Çubuk
, Ignacio Medina, Daniel Crespo, José Carbonell-Caballero
, Joaquín Dopazo
:
Actionable pathways: interactive discovery of therapeutic targets using signaling pathway models. Nucleic Acids Res. 44(Webserver-Issue): W212-W216 (2016) - 2015
- [j11]Roberto Alonso, Francisco Salavert, Francisco García-García
, José Carbonell-Caballero
, Marta Bleda, Luz Garcia-Alonso
, Alba Sanchis-Juan, Daniel Perez-Gil, Pablo Marín-García, Rubén Sánchez
, Cankut Çubuk
, Marta R. Hidalgo
, Alicia Amadoz
, Rosa D. Hernansaiz-Ballesteros
, Alejandro Alemán
, Joaquín Tárraga, David Montaner
, Ignacio Medina, Joaquín Dopazo:
Babelomics 5.0: functional interpretation for new generations of genomic data. Nucleic Acids Res. 43(Webserver-Issue): W117-W121 (2015) - 2013
- [j10]Patricia Sebastián-León
, José Carbonell
, Francisco Salavert, Rubén Sánchez
, Ignacio Medina
, Joaquín Dopazo
:
Inferring the functional effect of gene expression changes in signaling pathways. Nucleic Acids Res. 41(Webserver-Issue): 213-217 (2013) - 2012
- [j9]Fernando García-Alcalde, Konstantin Okonechnikov
, José Carbonell
, Luis M. Cruz, Stefan Götz
, Sonia Tarazona
, Joaquín Dopazo
, Thomas F. Meyer
, Ana Conesa
:
Qualimap: evaluating next-generation sequencing alignment data. Bioinform. 28(20): 2678-2679 (2012) - 2011
- [j8]Rubén Sánchez
, François Serra
, Joaquín Tárraga, Ignacio Medina
, José Carbonell
, Luis Pulido, Alejandro de María, Salvador Capella-Gutiérrez
, Jaime Huerta-Cepas
, Toni Gabaldón, Joaquín Dopazo
, Hernán Dopazo
:
Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing. Nucleic Acids Res. 39(Web-Server-Issue): 470-474 (2011) - 2010
- [j7]Ignacio Medina
, José Carbonell
, Luis Pulido, Sara C. Madeira
, Stefan Götz
, Ana Conesa
, Joaquín Tárraga, Alberto D. Pascual-Montano, Rubén Nogales-Cadenas, Javier Santoyo
, Francisco García-García
, Martina Marbà, David Montaner
, Joaquín Dopazo
:
Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. Nucleic Acids Res. 38(Web-Server-Issue): 210-213 (2010) - [j6]María José Nueda
, José Carbonell
, Ignacio Medina
, Joaquín Dopazo
, Ana Conesa
:
Serial Expression Analysis: a web tool for the analysis of serial gene expression data. Nucleic Acids Res. 38(Web-Server-Issue): 239-245 (2010)
2000 – 2009
- 2009
- [j5]Ignacio Medina
, David Montaner
, Nuria Bonifaci
, Miguel Angel Pujana, José Carbonell
, Joaquín Tárraga, Fátima Al-Shahrour, Joaquín Dopazo
:
Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies. Nucleic Acids Res. 37(Web-Server-Issue): 340-344 (2009) - 2008
- [j4]José V. Manjón, José Carbonell-Caballero
, Juan José Lull
, Gracián García-Martí, Luis Martí-Bonmatí
, Montserrat Robles
:
MRI denoising using Non-Local Means. Medical Image Anal. 12(4): 514-523 (2008) - [j3]Joaquín Tárraga, Ignacio Medina
, José Carbonell
, Jaime Huerta-Cepas
, Pablo Minguez
, Eva Alloza
, Fátima Al-Shahrour, Susana Vegas-Azcárate, Stefan Götz
, Pablo Escobar, Francisco García-García
, Ana Conesa
, David Montaner
, Joaquín Dopazo
:
GEPAS, a web-based tool for microarray data analysis and interpretation. Nucleic Acids Res. 36(Web-Server-Issue): 308-314 (2008) - [j2]Fátima Al-Shahrour, José Carbonell
, Pablo Minguez
, Stefan Götz
, Ana Conesa
, Joaquín Tárraga, Ignacio Medina
, Eva Alloza
, David Montaner
, Joaquín Dopazo
:
Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments. Nucleic Acids Res. 36(Web-Server-Issue): 341-346 (2008) - 2007
- [j1]José V. Manjón, Juan José Lull
, José Carbonell-Caballero
, Gracián García-Martí, Luis Martí-Bonmatí
, Montserrat Robles
:
A nonparametric MRI inhomogeneity correction method. Medical Image Anal. 11(4): 336-345 (2007) - 2006
- [c1]Ignacio Blanquer, Vicente Hernández, Daniel Monleón, José Carbonell, David Moratal, Bernardo Celda, Montserrat Robles, Luis Martí-Bonmatí:
Using the Grid to Analyze the Pharmacokinetic Modelling after Contrast Administration in Dynamic MRI. HealthGrid 2006: 82-92
Coauthor Index
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