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ORCIDQuantitative Biology, Volume 13
Volume 13, Number 1, 2025
- Issue Information.
- Ju Kang
, Yiyuan Niu, Xin Wang:
Mechanisms promoting biodiversity in ecosystems. - Jielin Li, Li Cheng, Yingxin Ma, Yizhi Cai, Junbiao Dai:
Recent technology advancements in large-scale DNA assembly. - Xinxin Chen, Ying Sheng, Liang Chen, Moxun Tang, Feng Jiao:
Quantifying cell fate change under different stochastic gene activation frameworks. - Junlin Li, Liheng Yang, Liansheng Li, Min Li, Juntao Gao, Li Yuan:
Single-cell analyses reveal impaired type B spermatogonia differentiation and meiotic entry in C-Nap1-null testes. - Yuansheng Cao, Shiling Liang:
Stochastic thermodynamics for biological functions. - Shouheng Tuo, Yanling Zhu, Jiangkun Lin, Jiewei Jiang:
AMHF-TP: Multifunctional therapeutic peptides prediction based on multi-granularity hierarchical features. - Zelin Li, Zhaoke Huang, Jianfeng Cao, Guoye Guan, Zhongying Zhao, Hong Yan:
An effective method for quantification, visualization, and analysis of 3D cell shape during early embryogenesis. - Siyu Liu, Qihui Hou, Daniel B. Kearns, Yilin Wu:
Self-organization of active plume lattice in bacterial bioconvection. - Zonghua Liu:
Physical mechanisms of human brain functions. - Panpan Han, Yang Zhou, Weihua Deng:
Modeling telomere shortening process.
Volume 13, Number 2, 2025
- Xiaojie Li, Jianhui Shi, Lei M. Li:
The human intelligence evolved from proximal cis-regulatory saltations. - Shaohua Gu, Jiqi Shao, Ruolin He, Guanyue Xiong, Zeyang Qu, Yuanzhe Shao, Linlong Yu, Di Zhang, Fanhao Wang, Ruichen Xu, Peng Guo, Ningbo Xi, Yinxiang Li, Yanzhao Wu, Zhong Wei, Zhiyuan Li:
Forging the iron-net: Towards a quantitative understanding of microbial communities via siderophore-mediated interactions. - Jorge A. Tzec-Interián, Daianna González-Padilla, Elsa B. Góngora-Castillo:
Bioinformatics perspectives on transcriptomics: A comprehensive review of bulk and single-cell RNA sequencing analyses. - Issue Information.
- Lei M. Li:
Commentary to "The human intelligence evolved from proximal cis-regulatory saltations". - Yong Zhang, Jizhong Lou:
Impact of lipid asymmetry on membrane biophysical properties: Insights from molecular dynamics simulations. - Chong Yu, Wenbo Li, Xiaona Fang, Jin Wang:
Identifying early warning signals of cancer formation. - Qun Jiang, Xiaoyang Chen, Zijing Gao, Jinmeng Jia, Shengquan Chen, Rui Jiang:
CASHeart: A database of single cells chromatin accessibility for the human heart. - Yulong Kan, Weihao Wang, Yunjing Qi, Zhongxiao Zhang, Xikeng Liang, Shuilin Jin:
A comparison of integration methods for single-cell RNA sequencing data and ATAC sequencing data. - Xiang Wang, Sansheng Yang, Hongwei Li:
scSCC: A swapped contrastive learning-based clustering method for single-cell gene expression data. - Zhaoyu Zhang, Xiaoyu Qiu, Hui Ning, Zihua Huang, Minzhen Tao, Min Liang, Zhen Xie:
SPECIFIC: A systematic framework for engineering cell state-responsive synthetic promoters reveals key regulators of T cell exhaustion. - Fangnan Sun, Yaxin Deng, Weihua Zhao, Yixue Xiong, Lingxia Zhao, Lida Zhang:
High-throughput quantitative assessment of ABA-responsive elements at single-nucleotide resolution.
Volume 13, Number 3, 2025
- Ali Yetgin:
Revolutionizing multi-omics analysis with artificial intelligence and data processing. - Lingfeng Xue, Zigang Song, Qi Ouyang, Chen Song:
Protocol for simulating the effect of THz electromagnetic field on ion channels. - Pengyao Ping, Tian Lan, Shuquan Su, Wei Liu, Jinyan Li:
How error correction affects polymerase chain reaction deduplication: A survey based on unique molecular identifier datasets of short reads. - Shaoqing Chen, Zheng Hu, Da Zhou:
Modeling combination chemo-immunotherapy for heterogeneous tumors. - Songming Tang, Siyu Li, Shengquan Chen:
Imputing not available values in single-cell DNA methylation data using the median is straightforward and effective. - Tianxin Xu, Yu Li, Xin Gao, Andrey Rzhetsky, Gengjie Jia:
An effective encoding of human medical conditions in disease space provides a versatile framework for deciphering disease associations. - Danqi Lang, Le Chen, Moxin Zhang, Haoyu Song, Jingyuan Li:
Link node: A method to characterize the chain topology of intrinsically disordered proteins. - Swadesh Pal, Roderick Melnik:
Complex non-Markovian dynamics and the dual role of astrocytes in Alzheimer's disease development and propagation. - Peng Zhang, Ting Gao, Jin Guo, Jinqiao Duan:
Action functional as an early warning indicator in the space of probability measures via Schrödinger bridge. - Yujia Cheng, Xiaoyong Pan, Yang Yang:
Loc4Lnc: Accurate prediction of long noncoding RNA subcellular localization via enhanced RNA sequence representation.
Volume 13, Number 4, 2025
- Md Jubair Pantho, Richard Annan, Landen Alexander Bauder, Sophia Huang, Letu Qingge, Hong Qin:
A data-driven sliding-window pairwise comparative approach for the estimation of transmission fitness of SARS-CoV-2 variants and construction of the evolution fitness landscape. - Runhao Wang, Leng Han:
Unveiling roles of non-coding RNAs in cancer through advanced technologies. - Jingwen Zhu, Pan Chu, Xiongfei Fu:
Understanding the development of bacterial colony: Physiology, new technology, and modeling.
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