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ORCIDInternational Journal of Data Mining and Bioinformatics, Volume 6
Volume 6, Number 1, 2012
- Guimin Qin, Lin Gao:
An algorithm for network motif discovery in biological networks. 1-16 - David Weisman, Dan A. Simovici:
Several remarks on the metric space of genetic codes. 17-26 - Kai-Cheng Hsu
, Yen-Fu Chen, Jinn-Moon Yang:
GemAffinity: a scoring function for predicting binding affinity and Virtual Screening. 27-41 - Xiujuan Lei, Xu Huang, Lei Shi, Aidong Zhang:
Clustering PPI data based on Improved functional-flow model through Quantum-behaved PSO. 42-60 - Tomás Arredondo, Diego Candel, Mauricio U. Leiva, Lioubov Dombrovskaia, Loreine Agulló, Michael Seeger:
Inference system using softcomputing and mixed data applied in metabolic pathway datamining. 61-85 - Indrajit Saha, Dariusz Plewczynski, Ujjwal Maulik, Sanghamitra Bandyopadhyay:
Improved differential evolution for microarray analysis. 86-103 - Ross K. K. Leung, Stephen Kwok-Wing Tsui:
iMOWSE, a scoring scheme bridging in silico and in vitro digestion in PMF. 104-113
Volume 6, Number 2, 2012
- Xiaoshi Yin, Jimmy Xiangji Huang, Zhoujun Li:
Re-ranking with context for high-performance biomedical information retrieval. 115-129 - Wengang Zhou, Julie A. Dickerson:
StruLocPred: structure-based protein subcellular localisation prediction using multi-class support vector machine. 130-143 - Olcay Kursun, Ergun Gumus, Ahmet Sertbas, Oleg V. Favorov:
Selection of vocal features for Parkinson's Disease diagnosis. 144-161 - Xin Geng, Jihong Guan, Qiwen Dong, Shuigeng Zhou:
An improved genetic algorithm for statistical potential function design and protein structure prediction. 162-177 - Gang Shu, Xiaodi Huang, Shanfeng Zhu:
A consensus method for prioritising drug-associated target proteins. 178-195 - Joana P. Gonçalves, Yves Moreau, Sara C. Madeira:
AliBiMotif: Integrating alignment and biclustering to unravel transcription factor binding sites in DNA sequences. 196-215 - Jeong Woo Son, Seong-Bae Park:
Learning word sense disambiguation in biomedical text with difference between training and test distributions. 216-237
Volume 6, Number 3, 2012
- Miyoung Shin, Hyungmin Lee, Munpyo Hong:
A hybrid approach to gene ranking using gene relation networks derived from literature for the identification of disease gene markers. 239-254 - Zhaohua Ji, Chunguo Wu, Yao Wang, Renchu Guan, Huawei Tu, Xiaozhou Wu, Yanchun Liang:
Tri-mean-based statistical differential gene expression detection. 255-271 - Dianwei Han, Jun Zhang, Guiliang Tang:
MicroRNAfold: pre-microRNA secondary structure prediction based on modified NCM model with thermodynamics-based scoring strategy. 272-291 - Hairong Duan, Moli Huang:
Genome-wide identification and evolutionary analysis of B7-H3. 292-303 - Francesco Archetti, Ilaria Giordani, Giancarlo Mauri, Enza Messina:
A new clustering approach for learning transcriptional modules. 304-323 - Belén Lorente-Galdos, Ignacio Medina, Carlos Morcillo-Suarez, Txema Heredia, Angel Carreño-Torres, Ricardo Sangros, Josep Alegre, Guillermo Pita, Gemma Vellalta, Núria Malats, David G. Pisano, Joaquín Dopazo, Arcadi Navarro:
Select Your SNPs (SYSNPs): a web tool for automatic and massive selection of SNPs. 324-334 - Arpit Srivastava, Abhinav Asati, Sandeep Kumar Jain, Yash Sharma, Mahua Bhattacharya:
Hybrid softcomputing model for lesion identification and information combination: some case studies. 335-353
Volume 6, Number 4, 2012
- Ignacio V. Martínez Espinosa, Enrique J. Gómez, M. Elena Hernando, Ricardo Villares, José Mario Mellado García:
Agent-based model of macrophage action on endocrine pancreas. 355-368 - José Paulo Lousado, José Luís Oliveira, Gabriela R. Moura, Manuel A. S. Santos:
An integrative approach for codon repeats evolutionary analyses. 369-381 - Paulo Maia, Paulo Vilaça, Isabel Rocha, Marcellinus Pont, Jean-François Tomb, Miguel Rocha:
An integrated computational environment for elementary modes analysis of biochemical networks. 382-395 - K. R. S. Sambasiva Rao, D. Srinivasa Rao:
A comparative-based phylogenetic study in the evolution of 16S rRNA and rad a genes in Archaea. 396-405 - Panagiotis Papapetrou, Gary Benson, George Kollios:
Mining poly-regions in DNA. 406-428 - Xin-Shun Xu, Ying-Xin Li:
Semi-supervised clustering algorithm for haplotype assembly problem based on MEC model. 429-446 - Yanxin Lu, Hua Xu, Neeraja B. Peterson, Qi Dai, Min Jiang, Joshua C. Denny, Mei Liu:
Extracting epidemiologic exposure and outcome terms from literature using machine learning approaches. 447-459
Volume 6, Number 5, 2012
- Yuanyuan Shen, Zhe Liu, Jürg Ott:
Support Vector Machines with L1 penalty for detecting gene-gene interactions. 463-470 - Min-Seok Kwon, Kyunga Kim, Sungyoung Lee, Taesung Park:
cuGWAM: Genome-wide Association Multifactor Dimensionality reduction using CUDA-enabled high-performance graphics processing unit. 471-481 - Jürg Ott, Dandan Sun:
Multilocus association analysis under polygenic models. 482-489 - Kyunghee Han, Kyee-Zu Kim, Jung Mi Oh, In-Wha Kim, Kyungim Kim, Taesung Park:
Unbalanced sample size effect on genome-wide population differentiation studies. 490-504 - Sung-Hee Park, Sangsoo Kim:
Pattern discovery of multivariate phenotypes by Association Rule Mining and its scheme for Genome-Wide Association Studies. 505-520 - TaeJin Ahn, Kyunghee Park, Dae-Soon Son, Nam Huh, Sohee Oh, Taejung Bae, Jungsun Park, Ji-Hyun Lee, Kyoohyoung Rho, Sunghoon Kim, Taesung Park, Kyusang Lee:
Selecting SNPs for pharmacogenomic association study. 521-534 - Sunwon Lee, Jaewoo Kang, Junho Oh:
A 2-phased approach for detecting multiple loci associations with traits. 535-556 - Wen Zhang, Juan Liu, Meng Zhao, Qingjiao Li:
Predicting linear B-cell epitopes by using sequence-derived structural and physicochemical features. 557-569
Volume 6, Number 6, 2012
- Rui Camacho, Rita Ferreira, Natacha Rosa, Vânia Guimarães, Nuno A. Fonseca, Vítor Santos Costa, Miguel de Sousa, Alexandre Magalhães:
Predicting the secondary structure of proteins using machine learning algorithms. 571-584 - Sara Silva, Leonardo Vanneschi:
Bloat free genetic programming: application to human oral bioavailability prediction. 585-601 - Miguel Reboiro-Jato, Daniel Glez-Peña, Fernando Díaz, Florentino Fdez-Riverola:
A novel ensemble approach for multicategory classification of DNA microarray data using biological relevant gene sets. 602-616 - Chao-Yang Pang, Gang Jiang, Shipeng Wang, Ben-Qiong Hu, Qingzhong Liu, Youping Deng, Xudong Huang:
Gene order computation using Alzheimer's DNA microarray gene expression data and the ant colony optimisation algorithm. 617-632 - Shengyang Wu, Curtis P. Langlotz, Paras Lakhani, Lyle H. Ungar:
Extracting templates from radiology reports using sequence alignment. 633-650 - Damrongrit Setsirichok, Theera Piroonratana, Anunchai Assawamakin, Touchpong Usavanarong, Chanin Limwongse, Waranyu Wongseree, Chatchawit Aporntewan, Nachol Chaiyaratana:
Small Ancestry Informative Marker panels for complete classification between the original four HapMap populations. 651-674 - Nancy Yu Song, Hong Yan:
Selection and mapping of DNA structural features for short gene recognition. 675-691
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