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ORCIDICBO 2022: Ann Arbor, MI, USA
- Alexander D. Diehl, William D. Duncan, Yongqun Oliver He:
Proceedings of the International Conference on Biomedical Ontology 2022 (ICBO), Ann Arbor, Michigan, USA, September 25 - 28, 2022. CEUR Workshop Proceedings 3805, CEUR-WS.org 2024
Full Papers
- C. Maria Keet:
The Gaps in the Terminological Representation of the ACORN Social Determinants of Health Survey. 1-10 - John Beverley, Yongqun He, Barry Smith, Shane Babcock, Eric Merrell, Lindsay G. Cowell, Regina Hurley, Sebastian Deusing:
Coordinating Coronavirus Research: The Virus Infectious Disease Ontology. 1-14 - Sabrina Toro, Nicolas Matentzoglu, Kathleen R. Mullen, Nicole A. Vasilevsky, Halie Rando, Melissa A. Haendel, Christopher J. Mungall, Zhi-Liang Hu, Gregoire Leroy, Imke Tammen, Frank W. Nicholas:
Classifying Animal Breeds with the Vertebrate Breed Ontology (VBO). 1-7 - Fumiaki Toyoshima, Adrien Barton, Jean-François Ethier:
An Ontological Approach to Developing a Unified and Interdisciplinary Framework for Aging. 1-11 - Anuwat Pengput, Alexander D. Diehl:
Ontology Representation for Cholangiocarcinoma. 1-7 - Melissa P. Resnick, Diane Montella, Wilmon McCray, Steven H. Brown, Keith E. Campbell, Jonathan R. Nebeker, Frank LeHouillier, Peter L. Elkin:
The Gaps in the Terminological Representation of the ACORN Social Determinants of Health Survey. 1-10 - S. Clint Dowland, William R. Hogan:
Using Ontologies to Enhance Data on Intimate Partner Violence. 1-6 - François Goyer, Paul Fabry, Adrien Barton, Jean-François Ethier:
An Ontology for Healthcare Systems. 1-9 - James P. Balhoff, Ugur Bayindir, Anita R. Caron, Nicolas Matentzoglu, David Osumi-Sutherland, Christopher J. Mungall:
Ubergraph: Integrating OBO Ontologies into a Unified Semantic Graph. 1-9 - Alexander Bartnik, Lucas M. Serra, Mackenzie T. Smith, William D. Duncan, Alan Ruttenberg, Michael G. Dwyer, Alexander D. Diehl:
Development of an Image Data Set Class: Its Role in Biomedical Imaging and Neuroimaging Research. 1-9 - Pratik Devkota, Somya D. Mohanty, Prashanti Manda:
Knowledge of the Ancestors: Intelligent Ontology-aware Annotation of Biological Literature using Semantic Similarity. 1-10 - Zach Landis-Lewis, Cooper Stansbury, John Rincon, Colin Gross:
Performance Summary Display Ontology: Feedback Intervention Content, Delivery, and Interpreted Information. 1-10 - Anna Maria Masci, Stephanie Holmgren, Charles Schmitt, Rima Habre, Anne E. Thessen, Rebecca Boyles, Carmen J. Marsit:
Environmental Health Language Collaborative (EHLC): a Route to Environmental Health Science Data Harmonization. 1-6 - Long Tran, Yongqun He:
OMOP-2-OPMI: Ontologization of OMOP CDM Using OPMI to Support Clinical Data interoperability and analysis. 1-11 - Matthew Diller, William R. Hogan:
An Ontological Representation of Money with a View Toward Economic Determinants of Health. 1-9
Invited Talks
- Barry Smith:
AlphaFold, AI and Ontologies. 1-3 - Robert Hoehndorf:
The Coevolution of Ontologies and Knowledge-based Analytics in Bioinformatics. 1-4
Poster Abstracts and Software Demos
- Lauren E. Chan, Jimmy Phuong, Anne E. Thessen, Stephanie S. Hong, Shahim Essaid, Melissa A. Haendel:
From Survey to Ontology, the Challenges and Opportunities in Ontologizing Questions and Answers. 1 - Anuwat Pengput, Alexander D. Diehl:
Development of Axiomatization for the Cholangiocarcinoma Ontology Using Common Logic Interchange Format. 1 - Wes Schafer, Jan Nespor, Vincent Antonucci, Yongqun Oliver He, Anna Dunn, Zachary E. X. Dance:
Collaborative Development of a Process Chemistry Domain Ontology, PROCO. 1 - Karl G. Helmer, Derek Chaplin, Nazek Queder, Satrajit S. Ghosh, Camille Maumet, Jean-Baptiste Poline, Theo G. M. van Erp, David B. Keator:
NIDM-Experiment: An Ontology for Annotating Neuroscientific Data. 1-3 - Giorgio A. Ubbiali, Andrea Borghini, Nicola Piras, Matthew C. Lange:
Shaping the Semantics of Healthy and Sustainable Food Systems: a Participatory Metaframework-based Approach. 1-2 - Sarah M. Alghamdi, Robert Hoehndorf:
Ontological Analysis of Collection Improves Classification of Cardinality Phenotypes. 1-2 - Jonathan P. Bona, Alexander D. Diehl, Alexander P. Cox, Aaron S. Kemp, Linda Larson-Prior:
Enhancing Childhood Nutrition Data with Open Biomedical Ontologies. 1 - Mark Phillips, Andre Dekker, Charles Mayo, Peter Gabriel, Jonathan P. Bona:
Building a Radiation Therapy Ontology. 1 - Emily Hartley, Daniel Olson, Ian Braun, Nicolas Matentzoglu, James A. Overton, Ramona L. Walls:
Building an Application Ontology and Knowledge Graph for Rare Disease Patient-Level Data. 1 - Morgan Mitchell, Lauren M. Wishnie, Alexander D. Diehl:
The Protein Conformation Ontology. 1 - Ghida Arnous, Yongqun He:
Ontological Representation and Analysis of the Molecular Interactions Related to COVID-19-associated Acute Kidney Injury. 1 - Yuki Yamagata, Shuichi Onami, Hiroshi Masuya:
Knowledge Systematization for Cellular Senescence Processes by Homeostasis Imbalance Process Ontology. 1 - James A. Overton, Rebecca C. Jackson, Sabrina Toro, Shawn Zheng Kai Tan, Bradley Varner, David Osumi-Sutherland, Nicolas Matentzoglu, Nicole A. Vasilevsky:
OBO Academy: Training Materials for Bioontologists. 1 - Qiuyue Yang, Jun Su, Xue Zhang, Yongqun He, Jiangan Xie:
The Ontology of Adverse Events in 2022. 1 - Sam Smith, Damion M. Dooley, Eric Merrell, John Beverley, Yongqun He:
Toward an Occupation Ontology, OccO. 1 - Tatsuya Kushida, Daiki Usuda, Toyoyuki Takada, Yuki Yamagata, Hiroshi Masuya:
Ontology Integration for Discovering Bioresources Contributing to Medical Science Research. 1 - James A. Overton:
The OntoDev Suite of Ontology and Data Integration Tools. 1 - Lauren Wishnie, Alexander D. Diehl:
A Data Structure for the Implementation of Referent Tracking Systems. 1 - William T. Roddy, Daniel Olson, Diane Corey, Ian Braun, Terrence R. McHugh, Emily Hartley, Smith Heavner, Ramona L. Walls:
Translating Medical Vocabularies via the Unified Medical Language Systems. 1-2
CELLS 2022: The 6th International Cells in Experimental Life Science Workshop
- Damien Goutte-Gattat:
Summarising scRNAseq Expression Data in FlyBase. 1-4
FOHTI 2022: FAIR Ontology Harmonization and TRUST Data Interoperability Workshop
- James A. Overton, Rebecca C. Jackson, Nicolas Matentzoglu, William D. Duncan, Randi Vita, Nomi L. Harris, Christopher J. Mungall, Bjoern Peters:
COB: A Core Ontology for Biology and Biomedicine. 1 - Michelle G. Giglio, Suvarna Nadendla, Arthur Brady, Amanda Charbonneau, Karl Czajkowski, Jeremy Yang, Tom Gillespie, Philippe Rocca-Serra, Jeffrey S. Grethe, Raja Mazumder, Bernard de Bono, Jonathan C. Silverstein, Daniel Clark, Mark A. Musen, Owen White:
Data Harmonization through Use of Community Standards in the Common Fund Data Ecosystem. 1-7
ROBI 2022: First Workshop on the Role of Ontologies in Biomedical AI
- Asiyah Yu Lin, Andrey Ibrahim Seleznev, Tianming "Danny" Ning, Paulene Grier, Lalisa "Mariam" Lin, Christopher Travieso, Ansu Chatterjee, Jaleal Sanjak:
Investigating Ontology Use in Artificial Intelligence and Machine Learning for Biomedical Research - A Preliminary Report from A Literature Review. 1-4
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