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Publication search results
found 43 matches
- 2023
- Yongbing Zhao:
TFSyntax: a database of transcription factors binding syntax in mammalian genomes. Nucleic Acids Res. 51(D1): 306-314 (2023) - 2021
- Sebastian Palacios:
Artificial neural network and precision genome engineering frameworks for genetic system engineering in mammalian cells. Massachusetts Institute of Technology, USA, 2021 - Anton Pirogov, Peter Pfaffelhuber, Angelika Börsch-Haubold, Bernhard Haubold:
High-complexity regions in mammalian genomes are enriched for developmental genes. Bioinform. 37(19): 3388 (2021) - Xiaolan Chen, Hui Yang, Guifen Liu, Yong Zhang:
NUCOME: A comprehensive database of nucleosome organization referenced landscapes in mammalian genomes. BMC Bioinform. 22(1): 321 (2021) - Madolyn L. MacDonald, Kelvin H. Lee:
EvalDNA: a machine learning-based tool for the comprehensive evaluation of mammalian genome assembly quality. BMC Bioinform. 22(1): 570 (2021) - 2019
- Anton Pirogov, Peter Pfaffelhuber, Angelika Börsch-Haubold, Bernhard Haubold:
High-complexity regions in mammalian genomes are enriched for developmental genes. Bioinform. 35(11): 1813-1819 (2019) - Krister M. Swenson, Mathieu Blanchette:
Large-scale mammalian genome rearrangements coincide with chromatin interactions. Bioinform. 35(14): i117-i126 (2019) - Tobias Zehnder, Philipp Benner, Martin Vingron:
Predicting enhancers in mammalian genomes using supervised hidden Markov models. BMC Bioinform. 20(1): 157:1-157:12 (2019) - 2018
- Mario A. Flores, Ivan Ovcharenko:
Enhancer reprogramming in mammalian genomes. BMC Bioinform. 19(1): 316:1-316:10 (2018) - 2017
- Milos Pavlovic, Pradipta Ray, Kristina Pavlovic, Aaron Kotamarti, Min Chen, Michael Q. Zhang:
DIRECTION: a machine learning framework for predicting and characterizing DNA methylation and hydroxymethylation in mammalian genomes. Bioinform. 33(19): 2986-2994 (2017) - Tobias Penzkofer, Marten Jäger, Marek Figlerowicz, Richard Badge, Stefan Mundlos, Peter N. Robinson, Tomasz Zemojtel:
L1Base 2: more retrotransposition-active LINE-1s, more mammalian genomes. Nucleic Acids Res. 45(Database-Issue): D68-D73 (2017) - 2016
- Roddy Jorquera, Rodrigo Ortiz, Francisco Ossandón, Juan Pablo Cárdenas, Rene Sepúlveda, Carolina González, David S. Holmes:
SinEx DB: a database for single exon coding sequences in mammalian genomes. Database J. Biol. Databases Curation 2016 (2016) - So Nakagawa, Mahoko Ueda Takahashi:
gEVE: a genome-based endogenous viral element database provides comprehensive viral protein-coding sequences in mammalian genomes. Database J. Biol. Databases Curation 2016 (2016) - 2015
- Sebastián Duchêne, Simon Y. W. Ho:
Mammalian genome evolution is governed by multiple pacemakers. Bioinform. 31(13): 2061-2065 (2015) - Wenlong Shen, Dong Wang, Bingyu Ye, Minglei Shi, Lei Ma, Yan Zhang, Zhihu Zhao:
GC3-biased gene domains in mammalian genomes. Bioinform. 31(19): 3081-3084 (2015) - 2014
- Eran Elhaik, Dan Graur:
A Comparative Study and a Phylogenetic Exploration of the Compositional Architectures of Mammalian Nuclear Genomes. PLoS Comput. Biol. 10(11) (2014) - 2013
- Marc Santolini:
Analyse computationnelle des éléments cis-régulateurs dans les génomes des drosophiles et des mammifères. (Computational analysis of cis-regulatory elements in drosophilae and mammalian genomes). Paris Diderot University, France, 2013 - 2012
- Mathieu Blanchette:
Exploiting ancestral mammalian genomes for the prediction of human transcription factor binding sites. BMC Bioinform. 13(S-19): S2 (2012) - 2011
- Gang Hu, Shiyi Shen, Kui Wang:
On the evolution rate in mammalian mitochondrial genomes. Comput. Biol. Chem. 35(3): 137-142 (2011) - Judith A. Blake, Carol J. Bult, James A. Kadin, Joel E. Richardson, Janan T. Eppig:
The Mouse Genome Database (MGD): premier model organism resource for mammalian genomics and genetics. Nucleic Acids Res. 39(Database-Issue): 842-848 (2011) - Regina Z. Cer, Kevin H. Bruce, Uma Mudunuri, Ming Yi, Natalia Volfovsky, Brian T. Luke, Albino Bacolla, Jack R. Collins, Robert M. Stephens:
Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes. Nucleic Acids Res. 39(Database-Issue): 383-391 (2011) - 2010
- Stephen A. Ramsey, Theo A. Knijnenburg, Kathleen A. Kennedy, Daniel E. Zak, Mark Gilchrist, Elizabeth S. Gold, Carrie D. Johnson, Aaron E. Lampano, Vladimir Litvak, Garnet Navarro, Tetyana Stolyar, Alan Aderem, Ilya Shmulevich:
Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites. Bioinform. 26(17): 2071-2075 (2010) - Max A. Alekseyev, Qian Peng, Pavel A. Pevzner, Glenn Tesler:
Decoding the Genomic Architecture of Mammalian and Plant Genomes: Synteny Blocks and Large-scale Duplications. Commun. Inf. Syst. 10(1): 1-22 (2010) - 2009
- Qian Peng, Max A. Alekseyev, Glenn Tesler, Pavel A. Pevzner:
Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes. WABI 2009: 220-232 - 2008
- Claire Lemaitre:
Réarrangements chromosomiques dans les génomes de mammifères : caractérisation des points de cassure. (Chromosomal rearrangements in mammalian genomes : characterising the breakpoints). Claude Bernard University Lyon 1, France, 2008 - Kyoung-Jae Won, Iouri Chepelev, Bing Ren, Wei Wang:
Prediction of regulatory elements in mammalian genomes using chromatin signatures. BMC Bioinform. 9 (2008) - Cédric Chauve, Eric Tannier:
A Methodological Framework for the Reconstruction of Contiguous Regions of Ancestral Genomes and Its Application to Mammalian Genomes. PLoS Comput. Biol. 4(11) (2008) - 2007
- Vincent Ferretti, Christian Poitras, Dominique Bergeron, Benoit Coulombe, François Robert, Mathieu Blanchette:
PReMod: a database of genome-wide mammalian cis-regulatory module predictions. Nucleic Acids Res. 35(Database-Issue): 122-126 (2007) - Wen-Yu Chung, Samir Wadhawan, Radek Szklarczyk, Sergei L. Kosakovsky Pond, Anton Nekrutenko:
A First Look at ARFome: Dual-Coding Genes in Mammalian Genomes. PLoS Comput. Biol. 3(5) (2007) - Joti Giordano, Yongchao Ge, Yevgeniy Gelfand, György Abrusán, Gary Benson, Peter E. Warburton:
Evolutionary History of Mammalian Transposons Determined by Genome-Wide Defragmentation. PLoS Comput. Biol. 3(7) (2007)
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