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Publication search results
found 343 matches
- 2024
- Dharmesh D. Bhuva, Chin Wee Tan, Ning Liu, Holly J. Whitfield, Nicholas Papachristos, Samuel C. Lee, Malvika Kharbanda, Ahmed Mohamed, Melissa J. Davis:
vissE: a versatile tool to identify and visualise higher-order molecular phenotypes from functional enrichment analysis. BMC Bioinform. 25(1): 64 (2024) - 2023
- Hyun Jae Cho, Mia Shu, Stefan Bekiranov, Chongzhi Zang, Aidong Zhang:
Interpretable meta-learning of multi-omics data for survival analysis and pathway enrichment. Bioinform. 39(4) (2023) - Henry Cousins, Taryn Hall, Yinglong Guo, Luke Tso, Kathy T. H. Tzeng, Le Cong, Russ B. Altman:
Gene set proximity analysis: expanding gene set enrichment analysis through learned geometric embeddings, with drug-repurposing applications in COVID-19. Bioinform. 39(1) (2023) - Zhuoqing Fang, Xinyuan Liu, Gary Peltz:
GSEApy: a comprehensive package for performing gene set enrichment analysis in Python. Bioinform. 39(1) (2023) - Zutan Li, Yuan Zhang, Jingya Fang, Zhihui Xu, Hao Zhang, Minfang Mao, Yuanyuan Chen, Liangyun Zhang, Cong Pian:
NcPath: a novel platform for visualization and enrichment analysis of human non-coding RNA and KEGG signaling pathways. Bioinform. 39(1) (2023) - Adrià Caballé-Mestres, Antoni Berenguer-Llergo, Camille Stephan-Otto Attolini:
Roastgsa: a comparison of rotation-based scores for gene set enrichment analysis. BMC Bioinform. 24(1): 408 (2023) - Belinda B. Garana, James H. Joly, Alireza Delfarah, Hyunjun Hong, Nicholas A. Graham:
Drug mechanism enrichment analysis improves prioritization of therapeutics for repurposing. BMC Bioinform. 24(1): 215 (2023) - Yinchun Su, Jiashuo Wu, Xiangmei Li, Ji Li, Xilong Zhao, Bingyue Pan, Junling Huang, Qingfei Kong, Junwei Han:
DTSEA: A network-based drug target set enrichment analysis method for drug repurposing against COVID-19. Comput. Biol. Medicine 159: 106969 (2023) - Omid Bateniparvar, Nima Noormohammadi:
An enrichment technique for bending analysis of in-plane heterogeneous thin plates with weak singularities. Eng. Comput. 39(5): 3131-3153 (2023) - Jia Chen, Jiahao Lin, Yongfei Hu, Meijun Ye, Linhui Yao, Le Wu, Wenhai Zhang, Meiyi Wang, Tingting Deng, Feng Guo, Yan Huang, Bofeng Zhu, Dong Wang:
RNADisease v4.0: an updated resource of RNA-associated diseases, providing RNA-disease analysis, enrichment and prediction. Nucleic Acids Res. 51(D1): 1397-1404 (2023) - John Erol Evangelista, Zhuorui Xie, Giacomo B. Marino, Nhi Nguyen, Daniel J. B. Clarke, Avi Ma'ayan:
Enrichr-KG: bridging enrichment analysis across multiple libraries. Nucleic Acids Res. 51(W1): 168-179 (2023) - Liis Kolberg, Uku Raudvere, Ivan Kuzmin, Priit Adler, Jaak Vilo, Hedi Peterson:
g:Profiler - interoperable web service for functional enrichment analysis and gene identifier mapping (2023 update). Nucleic Acids Res. 51(W1): 207-212 (2023) - Javier López-Ibáñez, Florencio Pazos, Monica Chagoyen:
MBROLE3: improved functional enrichment of chemical compounds for metabolomics data analysis. Nucleic Acids Res. 51(W1): 305-309 (2023) - Ahmed Mohamed, Dharmesh D. Bhuva, Sam Lee, Ning Liu, Chin Wee Tan, Melissa J. Davis:
vissE.cloud: a webserver to visualise higher order molecular phenotypes from enrichment analysis. Nucleic Acids Res. 51(W1): 593-600 (2023) - Retraction Note: Enrichment of accurate software effort estimation using fuzzy-based function point analysis in business data analytics. Neural Comput. Appl. 35(6): 4797 (2023)
- Kyle C. McGovern, Michelle Pistner Nixon, Justin D. Silverman:
Addressing erroneous scale assumptions in microbe and gene set enrichment analysis. PLoS Comput. Biol. 19(11) (2023) - Martin Spendl, Jaka Kokosar, Ela Praznik, Luka Ausec, Blaz Zupan:
Ranking of Survival-Related Gene Sets Through Integration of Single-Sample Gene Set Enrichment and Survival Analysis. AIME 2023: 328-337 - Xinglin Jia, An Phan, Claus Kadelka:
Concise Ranked Functional Enrichment Analysis. BCB 2023: 64:1 - Roberto Nai, Emilio Sulis, Laura Genga:
Automated Analysis with Event Log Enrichment of the European Public Procurement Processes. ER (Workshops) 2023: 178-188 - Tse-Yi Wang, Sheng-An Lee, Jen-Liang Cheng, Kuang-Chi Chen:
Enrichment Analysis of Biological Pathways and Protein Complexes in the PPI Network Associated with Heroin Use Disorder. ICCBB 2023: 38-47 - Hyung-Woo Lee:
Analysis of Digital Forensic Artifacts Data Enrichment Mechanism for Cyber Threat Intelligence. ICSCA 2023: 192-199 - Laura Willot, Dan Vodislav, Valérie Gouet-Brunet, Livio De Luca, Adeline Manuel:
Clustering for the Analysis and Enrichment of Corpus of Images for the Spatio-temporal Monitoring of Restoration Sites. SUMAC @ ACM Multimedia 2023: 39-47 - Yuqi Fang, Jinjian Wu, Qianqian Wang, Shijun Qiu, Andrea Bozoki, Huaicheng Yan, Mingxia Liu:
Source-Free Collaborative Domain Adaptation via Multi-Perspective Feature Enrichment for Functional MRI Analysis. CoRR abs/2308.12495 (2023) - 2022
- Xinyun Guo, Huan He, Jialin Yu, Shaoping Shi:
PKSPS: a novel method for predicting kinase of specific phosphorylation sites based on maximum weighted bipartite matching algorithm and phosphorylation sequence enrichment analysis. Briefings Bioinform. 23(1) (2022) - Zhi-Hui Luo, Lida Zhu, Ya-Min Wang, Sheng Hu Qian, Menglu Li, Wen Zhang, Zhen-Xia Chen:
DSEATM: drug set enrichment analysis uncovering disease mechanisms by biomedical text mining. Briefings Bioinform. 23(4) (2022) - Sarah Mubeen, Alpha Tom Kodamullil, Martin Hofmann-Apitius, Daniel Domingo-Fernández:
On the influence of several factors on pathway enrichment analysis. Briefings Bioinform. 23(3) (2022) - Yongsan Yang, Fengcui Qian, Xuecang Li, Yanyu Li, Liwei Zhou, Qiuyu Wang, Xinyuan Zhou, Jian Zhang, Chao Song, Zhengmin Yu, Ting Cui, Chenchen Feng, Jiang Zhu, Desi Shang, Jiaqi Liu, Mengfei Sun, Yuexin Zhang, Huifang Tang, Chunquan Li:
GREAP: a comprehensive enrichment analysis software for human genomic regions. Briefings Bioinform. 23(5) (2022) - Alexa A. Woodward, Deanne M. Taylor, Elizabeth Goldmuntz, Laura E. Mitchell, A. J. Agopian, Jason H. Moore, Ryan J. Urbanowicz:
Gene-Interaction-Sensitive enrichment analysis in congenital heart disease. BioData Min. 15(1) (2022) - Alexander Lachmann, Zhuorui Xie, Avi Ma'ayan:
blitzGSEA: efficient computation of gene set enrichment analysis through gamma distribution approximation. Bioinform. 38(8): 2356-2357 (2022) - Noriaki Sato, Yoshinori Tamada, Guangchuang Yu, Yasushi Okuno:
CBNplot: Bayesian network plots for enrichment analysis. Bioinform. 38(10): 2959-2960 (2022)
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