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Publication search results
found 64 matches
- 2024
- Leigh Foster, Benjamin Young:
The Squish Map and the $SL_2$ Double Dimer Model. Electron. J. Comb. 31(1) (2024) - Masao Inoue, Toru Ekimoto, Tsutomu Yamane, Mitsunori Ikeguchi:
Computational Analysis of Activation of Dimerized Epidermal Growth Factor Receptor Kinase Using the String Method and Markov State Model. J. Chem. Inf. Model. 64(9): 3884-3895 (2024) - 2023
- Gregg Musiker, Kayla Wright:
Mixed Dimer Configuration Model in Type D Cluster Algebras. Electron. J. Comb. 30(2) (2023) - Fengjuan Huang, Xinjie Fan, Ying Wang, Chuang Wang, Yu Zou, Jiangfang Lian, Feng Ding, Yunxiang Sun:
Unveiling Medin Folding and Dimerization Dynamics and Conformations via Atomistic Discrete Molecular Dynamics Simulations. J. Chem. Inf. Model. 63(20): 6376-6385 (2023) - Nuno F. B. Oliveira, Filipe E. P. Rodrigues, João N. M. Vitorino, Patrícia F. N. Faísca, Miguel Machuqueiro:
Interfacial Dynamics and Growth Modes of β2-Microglobulin Dimers. J. Chem. Inf. Model. 63(14): 4447-4457 (2023) - Sweta Pradhan, Rajendra Rath, Mithun Biswas:
GB1 Dimerization in Crowders: A Multiple Resolution Approach. J. Chem. Inf. Model. 63(5): 1570-1577 (2023) - Xue Zhang, Lei Li, Qingchuan Zheng:
Dissecting the Effect of Temperature on Hyperthermophilic Pf2001 Esterase Dimerization by Molecular Dynamics. J. Chem. Inf. Model. 63(15): 4762-4771 (2023) - Daipeng Chen, Zary Forghany, Xinxin Liu, Haijiang Wang, Roeland M. H. Merks, David A. Baker:
A new model of Notch signalling: Control of Notch receptor cis-inhibition via Notch ligand dimers. PLoS Comput. Biol. 19(1) (2023) - Qiang Du, Huaiyu Li, Michael I. Weinstein, Lu Zhang:
Discontinuous Galerkin methods for a first-order semi-linear hyperbolic continuum model of a topological resonator dimer array. CoRR abs/2305.00072 (2023) - 2022
- Xin Chen, Yuan Yuan, Yichi Chen, Jin Yu, Jingzhou Wang, Jianfang Chen, Yanzhi Guo, Xuemei Pu:
Biased Activation Mechanism Induced by GPCR Heterodimerization: Observations from μOR/δOR Dimers. J. Chem. Inf. Model. 62(22): 5581-5600 (2022) - Wanqian Dong, Rui Zhou, Jiawen Chen, Zhengyu Shu, Mojie Duan:
Phosphorylation Regulation on the Homo-Dimeric Binding of Transactive Response DNA-Binding Protein. J. Chem. Inf. Model. 62(21): 5267-5275 (2022) - Manuel A. Llanos, Clara Ventura, Pedro Martín, Nicolas Enrique, Juan I. Felice, Luciana Gavernet, Verónica Milesi:
Novel Dimeric hHv1 Model and Structural Bioinformatic Analysis Reveal an ATP-Binding Site Resulting in a Channel Activating Effect. J. Chem. Inf. Model. 62(13): 3200-3212 (2022) - Lei Zhang, Pingwen Zhang, Xiangcheng Zheng:
A model-free shrinking-dimer saddle dynamics for finding saddle point and solution landscape. CoRR abs/2212.14328 (2022) - 2021
- Masataka Yamauchi, Hisashi Okumura:
Dimerization of α-Synuclein Fragments Studied by Isothermal-Isobaric Replica-Permutation Molecular Dynamics Simulation. J. Chem. Inf. Model. 61(3): 1307-1321 (2021) - Michael R. Lindstrom, Manuel B. Chavez, Elijah A. Gross-Sable, Eric Y. Hayden, David B. Teplow:
From reaction kinetics to dementia: A simple dimer model of Alzheimer's disease etiology. PLoS Comput. Biol. 17(7) (2021) - 2020
- Jarkko Toivonen, Pratyush K. Das, Jussi Taipale, Esko Ukkonen:
MODER2: first-order Markov modeling and discovery of monomeric and dimeric binding motifs. Bioinform. 36(9): 2690-2696 (2020) - Rajas Rao, Julien Diharce, Bérénice Dugué, Mariano A. Ostuni, Frédéric Cadet, Catherine Etchebest:
Versatile Dimerisation Process of Translocator Protein (TSPO) Revealed by an Extensive Sampling Based on a Coarse-Grained Dynamics Study. J. Chem. Inf. Model. 60(8): 3944-3957 (2020) - Gauri Thapa, Akash Bhattacharya, Swati Bhattacharya:
Dimeric Hold States of Anti-HIV Protein SAMHD1 are Redox Tunable. J. Chem. Inf. Model. 60(12): 6377-6391 (2020) - 2019
- Jarkko Toivonen:
Modeling and learning monomeric and dimeric transcription factor binding motifs. University of Helsinki, Finland, 2019 - Natieli Alves da Silva, Roberto Luiz Andrade Haiduke:
Infrared intensity analysis of hydroxyl stretching modes in carboxylic acid dimers by means of the charge-charge flux-dipole flux model. J. Comput. Chem. 40(28): 2482-2490 (2019) - Michal Chojecki, Dorota Rutkowska-Zbik, Tatiana Korona:
Dimerization Behavior of Methyl Chlorophyllide a as the Model of Chlorophyll a in the Presence of Water Molecules - Theoretical Study. J. Chem. Inf. Model. 59(5): 2123-2140 (2019) - Ismail Erol, Bunyemin Cosut, Serdar Durdagi:
Toward Understanding the Impact of Dimerization Interfaces in Angiotensin II Type 1 Receptor. J. Chem. Inf. Model. 59(10): 4314-4327 (2019) - Abhishek Kumar, Debaditya Mukherjee, Priyadarshi Satpati:
Mutations in Parkinson's Disease Associated Protein DJ-1 Alter the Energetics of DJ-1 Dimerization. J. Chem. Inf. Model. 59(4): 1497-1507 (2019) - Cheng-Dong Li, Muhammad Junaid, Hui Chen, Arif Ali, Dong-Qing Wei:
Helix-Switch Enables C99 Dimer Transition between the Multiple Conformations. J. Chem. Inf. Model. 59(1): 339-350 (2019) - Fuhui Zhang, Yuan Yuan, Minghui Xiang, Yanzhi Guo, Menglong Li, Yijing Liu, Xuemei Pu:
Molecular Mechanism Regarding Allosteric Modulation of Ligand Binding and the Impact of Mutations on Dimerization for CCR5 Homodimer. J. Chem. Inf. Model. 59(5): 1965-1976 (2019) - 2018
- Hamid Hadi-Alijanvand, Maryam Rouhani:
Partner-Specific Prediction of Protein-Dimer Stability from Unbound Structure of Monomer. J. Chem. Inf. Model. 58(3): 733-745 (2018) - Ramin Ekhteiari Salmas, Philip Seeman, Matthias Stein, Serdar Durdagi:
Structural Investigation of the Dopamine-2 Receptor Agonist Bromocriptine Binding to Dimeric D2HighR and D2LowR States. J. Chem. Inf. Model. 58(4): 826-836 (2018) - Paul Melotti:
The free-fermionic C2(1) loop model, double dimers and Kashaev's recurrence. J. Comb. Theory A 158: 407-448 (2018) - Keiko Itano, Takeshi Ito, Shuji Kawasaki, Yoshinori Murakami, Takashi Suzuki:
Mathematical modeling and analysis of ErbB3 and EGFR dimerization process for the gefitinib resistance. JSIAM Lett. 10: 33-36 (2018) - 2017
- Surabhi Maheshwari, Michal Brylinski:
Across-proteome modeling of dimer structures for the bottom-up assembly of protein-protein interaction networks. BMC Bioinform. 18(1): 257:1-257:14 (2017)
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