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Publication search results
found 261 matches
- 2023
- Yi Liu, Benjamin L. Elsworth, Tom R. Gaunt:
Using language models and ontology topology to perform semantic mapping of traits between biomedical datasets. Bioinform. 39(4) (2023) - Samira Babalou, Alsayed Algergawy, Birgitta König-Ries:
SimBio: Adopting Particle Swarm Optimization for ontology-based biomedical term similarity assessment. Data Knowl. Eng. 145: 102137 (2023) - Quoc-An Nguyen, Khanh-Vinh Nguyen, Hoang-Quynh Le, Duy-Cat Can, Tam Doan Thanh, Trung-Hieu Do, Mai-Vu Tran:
Integrating Ontology-Based Knowledge to Improve Biomedical Multi-Document Summarization Model. ACIIDS (2) 2023: 99-110 - Shizheng Qiu, Yadong Wang, Ying Zhang, Yang Hu:
Identification of risk genes and biological pathways influencing myopia via transcriptome association study and biomedical ontology methods. BIBM 2023: 2926-2931 - Hang Dong, Jiaoyan Chen, Yuan He, Ian Horrocks:
Ontology Enrichment from Texts: A Biomedical Dataset for Concept Discovery and Placement. CIKM 2023: 5316-5320 - Muhammad Amith, Licong Cui, Kirk Roberts, Cui Tao:
Application of an ontology for model cards to generate computable artifacts for linking machine learning information from biomedical research. WWW (Companion Volume) 2023: 820-825 - Fernanda Farinelli, Amanda Damasceno de Souza, Eduardo Ribeiro Felipe:
Proceedings of the International Conference on Biomedical Ontologies 2023 together with the Workshop on Ontologies for Infectious and Immune-Mediated Disease Data Science (OIIDDS 2023) and the FAIR Ontology Harmonization and TRUST Data Interoperability Workshop (FOHTI 2023), Brasília, Brazil, August 28 - September 1, 2023. CEUR Workshop Proceedings 3603, CEUR-WS.org 2023 [contents] - Hang Dong, Jiaoyan Chen, Yuan He, Ian Horrocks:
Ontology Enrichment from Texts (OET): A Biomedical Dataset for Concept Discovery and Placement. Version 3. Zenodo, 2023 [all versions] - Hang Dong, Jiaoyan Chen, Yuan He, Ian Horrocks:
Ontology Enrichment from Texts (OET): A Biomedical Dataset for Concept Discovery and Placement. Version 2. Zenodo, 2023 [all versions] - Hang Dong, Jiaoyan Chen, Yuan He, Ian Horrocks:
Ontology Enrichment from Texts (OET): A Biomedical Dataset for Concept Discovery and Placement. Version 1. Zenodo, 2023 [all versions] - Hang Dong, Jiaoyan Chen, Yuan He, Ian Horrocks:
Ontology Enrichment from Texts (OET): A Biomedical Dataset for Concept Discovery and Placement. Multiple versions. Zenodo, 2023 [all versions] - Yuan He, Jiaoyan Chen, Hang Dong, Ernesto Jiménez-Ruiz, Ali Hadian, Ian Horrocks:
Bio-ML: Machine Learning-Friendly Biomedical Datasets for Equivalence and Subsumption Ontology Matching. Version OAEI Bio-ML 2023. Zenodo, 2023 [all versions] - Muhammad Amith, Licong Cui, Kirk Roberts, Cui Tao:
Application of an ontology for model cards to generate computable artifacts for linking machine learning information from biomedical research. CoRR abs/2303.11991 (2023) - Hang Dong, Jiaoyan Chen, Yuan He, Ian Horrocks:
Ontology Enrichment from Texts: A Biomedical Dataset for Concept Discovery and Placement. CoRR abs/2306.14704 (2023) - Ahmed Abdeen Hamed, Alessandro Crimi, Magdalena M. Misiak, Byung Suk Lee:
Establishing Trust in ChatGPT BioMedical Generated Text: An Ontology-Based Knowledge Graph to Validate Disease-Symptom Links. CoRR abs/2308.03929 (2023) - Antonio Zaitoun, Tomer Sagi, Szymon Wilk, Mor Peleg:
Can Large Language Models Augment a Biomedical Ontology with missing Concepts and Relations? CoRR abs/2311.06858 (2023) - 2022
- Nicolas Matentzoglu, Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron, William D. Duncan, Joe E. Flack, Melissa A. Haendel, Nomi L. Harris, William R. Hogan, Charles Tapley Hoyt, Rebecca C. Jackson, Hyeongsik Kim, Hüseyin Kir, Martin Larralde, Julie A. McMurry, James A. Overton, Bjoern Peters, Clare Pilgrim, Raymund Stefancsik, Sofia M. C. Robb, Sabrina Toro, Nicole A. Vasilevsky, Ramona L. Walls, Christopher J. Mungall, David Osumi-Sutherland:
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies. Database J. Biol. Databases Curation 2022(2022) (2022) - Jorge Martínez Gil, José Manuel Chaves-González:
Interpretable ontology meta-matching in the biomedical domain using Mamdani fuzzy inference. Expert Syst. Appl. 188: 116025 (2022) - Xiaoling Jiang, Hui Zhang, Jiaming Xu, Weicheng Wu, Xun Mo:
Biomedical text mining algorithm based on domain ontology. Int. J. Data Min. Bioinform. 27(1/2/3): 187-200 (2022) - Amel Raboudi, Marianne Allanic, Daniel Balvay, Pierre-Yves Hervé, Thomas Viel, Thulaciga Yoganathan, Anais Certain, Jacques Hilbey, Jean Charlet, Alexandre Durupt, Philippe Boutinaud, Benoît Eynard, Bertrand Tavitian:
The BMS-LM ontology for biomedical data reporting throughout the lifecycle of a research study: From data model to ontology. J. Biomed. Informatics 127: 104007 (2022) - Nabil Moussaoui, Abdeslem Dennai, Khaled Benali:
OntoBa: Ontology of Biomedical Analysis. J. Inf. Knowl. Manag. 21(4): 2250056:1-2250056:19 (2022) - Xingsi Xue, Qi Wu, Miao Ye, Hai Zhu, Yikun Huang:
Efficient Biomedical Ontology Meta-matching Based on Interpolation Model Based Hybrid Evolutionary Algorithm. BIBM 2022: 2490-2497 - Xingsi Xue, Wenbin Tan:
Optimizing large-scale biomedical ontology alignment through co-operative NSGA-II. CIS 2022: 316-320 - Andrea Álvarez Pérez, Ana Iglesias-Molina, Lucía Prieto Santamaría, María Poveda-Villalón, Carlos Badenes-Olmedo, Alejandro Rodríguez González:
EBOCA: Evidences for BiOmedical Concepts Association Ontology. EKAW 2022: 152-166 - Yuan He, Jiaoyan Chen, Hang Dong, Ernesto Jiménez-Ruiz, Ali Hadian, Ian Horrocks:
Machine Learning-Friendly Biomedical Datasets for Equivalence and Subsumption Ontology Matching. ISWC 2022: 575-591 - Ahmad Aghaebrahimian, Maria Anisimova, Manuel Gil:
Ontology-Aware Biomedical Relation Extraction. TSD 2022: 160-171 - Yuan He, Jiaoyan Chen, Hang Dong, Ernesto Jiménez-Ruiz, Ali Hadian, Ian Horrocks:
Machine Learning-Friendly Biomedical Datasets for Equivalence and Subsumption Ontology Matching. Version OAEI-2022. Zenodo, 2022 [all versions] - Yuan He, Jiaoyan Chen, Hang Dong, Ernesto Jiménez-Ruiz, Ali Hadian, Ian Horrocks:
Machine Learning-Friendly Biomedical Datasets for Equivalence and Subsumption Ontology Matching. Version Deprecated. Zenodo, 2022 [all versions] - Yuan He, Jiaoyan Chen, Hang Dong, Ernesto Jiménez-Ruiz, Ali Hadian, Ian Horrocks:
Bio-ML: Machine Learning-Friendly Biomedical Datasets for Equivalence and Subsumption Ontology Matching. Multiple versions. Zenodo, 2022-2023 [all versions] - Yuan He, Jiaoyan Chen, Hang Dong, Ernesto Jiménez-Ruiz, Ali Hadian, Ian Horrocks:
Machine Learning-Friendly Biomedical Datasets for Equivalence and Subsumption Ontology Matching. CoRR abs/2205.03447 (2022)
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