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ORCIDJarl E. S. Wikberg
Person information
- affiliation: Uppsala University, Sweden
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Journal Articles
- 2016
[j25]Jonathan Alvarsson
, Samuel Lampa, Wesley Schaal, Claes R. Andersson, Jarl E. S. Wikberg, Ola Spjuth:
Large-scale ligand-based predictive modelling using support vector machines. J. Cheminformatics 8(1): 39:1-39:9 (2016)- [j24]Saw Simeon, Watshara Shoombuatong, Nuttapat Anuwongcharoen, Likit Preeyanon, Virapong Prachayasittikul, Jarl E. S. Wikberg, Chanin Nantasenamat:
osFP: a web server for predicting the oligomeric states of fluorescent proteins. J. Cheminformatics 8(1): 72:1-72:15 (2016) - 2015
- [j23]Sunanta Nabu, Chanin Nantasenamat, Wiwat Owasirikul, Ratana Lawung, Chartchalerm Isarankura-Na-Ayudhya, Maris Lapins, Jarl E. S. Wikberg, Virapong Prachayasittikul:
Proteochemometric model for predicting the inhibition of penicillin-binding proteins. J. Comput. Aided Mol. Des. 29(2): 127-141 (2015) - 2014
- [j22]Chanin Nantasenamat, Saw Simeon, Wiwat Owasirikul, Napat Songtawee, Maris Lapins, Virapong Prachayasittikul, Jarl E. S. Wikberg:
Illuminating the origins of spectral properties of green fluorescent proteins via proteochemometric and molecular modeling. J. Comput. Chem. 35(27): 1951-1966 (2014) - [j21]Jonathan Alvarsson, Martin Eklund, Ola Engkvist, Ola Spjuth, Lars Carlsson, Jarl E. S. Wikberg, Tobias Noeske:
Ligand-Based Target Prediction with Signature Fingerprints. J. Chem. Inf. Model. 54(10): 2647-2653 (2014) - [j20]Jonathan Alvarsson, Martin Eklund, Claes R. Andersson, Lars Carlsson, Ola Spjuth, Jarl E. S. Wikberg:
Benchmarking Study of Parameter Variation When Using Signature Fingerprints Together with Support Vector Machines. J. Chem. Inf. Model. 54(11): 3211-3217 (2014) - 2013
- [j19]Ola Spjuth, Valentin Georgiev, Lars Carlsson, Jonathan Alvarsson, Arvid Berg, Egon L. Willighagen, Jarl E. S. Wikberg, Martin Eklund:
Bioclipse-R: integrating management and visualization of life science data with statistical analysis. Bioinform. 29(2): 286-289 (2013) - 2011
- [j18]Ola Spjuth, Martin Eklund, Maris Lapins, Muhammad Junaid, Jarl E. S. Wikberg:
Services for prediction of drug susceptibility for HIV proteases and reverse transcriptases at the HIV drug research centre. Bioinform. 27(12): 1719-1720 (2011) - [j17]Egon L. Willighagen, Jonathan Alvarsson, Annsofie Andersson, Martin Eklund, Samuel Lampa, Maris Lapins, Ola Spjuth, Jarl E. S. Wikberg:
Linking the Resource Description Framework to cheminformatics and proteochemometrics. J. Biomed. Semant. 2(S-1): S6 (2011) - [j16]Jonathan Alvarsson, Claes R. Andersson, Ola Spjuth, Rolf Larsson, Jarl E. S. Wikberg:
Brunn: An open source laboratory information system for microplates with a graphical plate layout design process. BMC Bioinform. 12: 179 (2011) - 2010
- [j15]Martin Eklund, Ola Spjuth, Jarl E. S. Wikberg:
An eScience-Bayes strategy for analyzing omics data. BMC Bioinform. 11: 282 (2010) - [j14]Maris Lapins, Jarl E. S. Wikberg:
Kinome-wide interaction modelling using alignment-based and alignment-independent approaches for kinase description and linear and non-linear data analysis techniques. BMC Bioinform. 11: 339 (2010) - [j13]Ola Spjuth, Egon L. Willighagen, Rajarshi Guha, Martin Eklund, Jarl E. S. Wikberg:
Towards interoperable and reproducible QSAR analyses: Exchange of datasets. J. Cheminformatics 2: 5 (2010) - 2009
- [j12]Johannes Wagener, Ola Spjuth, Egon L. Willighagen, Jarl E. S. Wikberg:
XMPP for cloud computing in bioinformatics supporting discovery and invocation of asynchronous web services. BMC Bioinform. 10: 279 (2009) - [j11]Ola Spjuth, Jonathan Alvarsson, Arvid Berg, Martin Eklund, Stefan Kuhn, Carl Mäsak, Gilleain M. Torrance, Johannes Wagener, Egon L. Willighagen, Christoph Steinbeck, Jarl E. S. Wikberg:
Bioclipse 2: A scriptable integration platform for the life sciences. BMC Bioinform. 10: 397 (2009) - [j10]Maris Lapins, Jarl E. S. Wikberg:
Proteochemometric Modeling of Drug Resistance over the Mutational Space for Multiple HIV Protease Variants and Multiple Protease Inhibitors. J. Chem. Inf. Model. 49(5): 1202-1210 (2009) - 2008
- [j9]Martin Eklund, Ola Spjuth, Jarl E. S. Wikberg:
The C1C2: A framework for simultaneous model selection and assessment. BMC Bioinform. 9 (2008) - [j8]Maris Lapins, Martin Eklund, Ola Spjuth, Peteris Prusis, Jarl E. S. Wikberg:
Proteochemometric modeling of HIV protease susceptibility. BMC Bioinform. 9 (2008) - [j7]Aleksejs Kontijevskis, Jan Komorowski, Jarl E. S. Wikberg:
Generalized Proteochemometric Model of Multiple Cytochrome P450 Enzymes and Their Inhibitors. J. Chem. Inf. Model. 48(9): 1840-1850 (2008) - [j6]Helena Strömbergsson, Pawel Daniluk, Andriy Kryshtafovych, Krzysztof Fidelis, Jarl E. S. Wikberg, Gerard J. Kleywegt, Torgeir R. Hvidsten:
Interaction Model Based on Local Protein Substructures Generalizes to the Entire Structural Enzyme-Ligand Space. J. Chem. Inf. Model. 48(11): 2278-2288 (2008) - 2007
- [j5]Ola Spjuth, Tobias Helmus, Egon L. Willighagen, Stefan Kuhn, Martin Eklund, Johannes Wagener, Peter Murray-Rust, Christoph Steinbeck, Jarl E. S. Wikberg:
Bioclipse: an open source workbench for chemo- and bioinformatics. BMC Bioinform. 8 (2007) - [j4]Aleksejs Kontijevskis, Peteris Prusis, Ramona Petrovska, Sviatlana Yahorava, Felikss Mutulis, Ilze Mutule, Henryk Jan Komorowski, Jarl E. S. Wikberg:
A Look Inside HIV Resistance through Retroviral Protease Interaction Maps. PLoS Comput. Biol. 3(3) (2007) - 2006
- [j3]Peteris Prusis, Staffan Uhlén, Ramona Petrovska, Maris Lapinsh, Jarl E. S. Wikberg:
Prediction of indirect interactions in proteins. BMC Bioinform. 7: 167 (2006) - 2005
- [j2]Maris Lapinsh, Peteris Prusis, Staffan Uhlén, Jarl E. S. Wikberg:
Improved approach for proteochemometrics modeling: application to organic compound - amine G protein-coupled receptor interactions. Bioinform. 21(23): 4289-4296 (2005) - [j1]Eva Freyhult, Peteris Prusis, Maris Lapinsh, Jarl E. S. Wikberg, Vincent Moulton, Mats G. Gustafsson:
Unbiased descriptor and parameter selection confirms the potential of proteochemometric modelling. BMC Bioinform. 6: 50 (2005)
Conference and Workshop Papers
- 2009
- [c2]Egon L. Willighagen, Jarl E. S. Wikberg:
Linking Open Drug Data to Cheminformatics and Proteochemometrics. SWAT4LS 2009 - 2004
- [c1]Helena Strömbergsson, Peteris Prusis, Herman Midelfart, Jarl E. S. Wikberg, Henryk Jan Komorowski:
Proteochemometrics Modeling of Receptor-Ligand Interactions Using Rough Sets. German Conference on Bioinformatics 2004: 85-94
Coauthor Index
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