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Hong-Jie Dai
- > Home > Persons > Hong-Jie Dai
Publications
- 2022
- [j41]Chen-Kai Wang, Feng-Duo Wang, You-Qian Lee, Pei-Tsz Chen, Bo-Hong Wang, Chu-Hsien Su, Joseph Chin-Chi Kuo, Chi-Shin Wu, Yi-Ling Chien, Hong-Jie Dai, Vincent S. Tseng, Wen-Lian Hsu:
Principle-Based Approach for the De-Identification of Code-Mixed Electronic Health Records. IEEE Access 10: 22875-22885 (2022) - 2019
- [j36]Hong-Jie Dai, Chen-Kai Wang, Nai-Wen Chang, Ming-Siang Huang, Jitendra Jonnagaddala, Feng-Duo Wang, Wen-Lian Hsu:
Statistical principle-based approach for recognizing and normalizing microRNAs described in scientific literature. Database J. Biol. Databases Curation 2019: baz030 (2019) - 2018
- [c26]Neha Warikoo, Yung-Chun Chang, Hong-Jie Dai, Wen-Lian Hsu:
An Ensemble Neural Network Model for Benefiting Pregnancy Health Stats from Mining Social Media. AIRS 2018: 3-15 - 2017
- [j32]Nai-Wen Chang, Hong-Jie Dai, Yung-Yu Shih, Chi-Yang Wu, Mira Anne C. dela Rosa, Rofeamor P. Obena, Yu-Ju Chen, Wen-Lian Hsu, Yen-Jen Oyang:
Biomarker identification of hepatocellular carcinoma using a methodical literature mining strategy. Database J. Biol. Databases Curation 2017: bax082 (2017) - [c23]Yi-Jie Huang, Chu-Hsien Su, Yi-Chun Chang, Tseng-Hsin Ting, Tzu-Yuan Fu, Rou-Min Wang, Hong-Jie Dai, Yung-Chun Chang, Jitendra Jonnagaddala, Wen-Lian Hsu:
Incorporating Dependency Trees Improve Identification of Pregnant Women on Social Media Platforms. DDDSM@IJCNLP 2017: 26-32 - 2016
- [j30]Hong-Jie Dai, Chu-Hsien Su, Po-Ting Lai, Ming-Siang Huang, Jitendra Jonnagaddala, Toni Rose Jue, Shruti Rao, Hui-Jou Chou, Marija Milacic, Onkar Singh, Syed Abdul Shabbir, Wen-Lian Hsu:
MET network in PubMed: a text-mined network visualization and curation system. Database J. Biol. Databases Curation 2016 (2016) - [j28]Sun Kim, Rezarta Islamaj Dogan, Andrew Chatr-aryamontri, Christie S. Chang, Rose Oughtred, Jennifer M. Rust, Riza Batista-Navarro, Jacob Carter, Sophia Ananiadou, Sérgio Matos, André Santos, David Campos, José Luís Oliveira, Onkar Singh, Jitendra Jonnagaddala, Hong-Jie Dai, Emily Chia-Yu Su, Yung-Chun Chang, Yu-Chen Su, Chun-Han Chu, Chien Chin Chen, Wen-Lian Hsu, Yifan Peng, Cecilia N. Arighi, Cathy H. Wu, K. Vijay-Shanker, Ferhat Aydin, Zehra Melce Hüsünbeyi, Arzucan Özgür, Soo-Yong Shin, Dongseop Kwon, Kara Dolinski, Mike Tyers, W. John Wilbur, Donald C. Comeau:
BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID. Database J. Biol. Databases Curation 2016 (2016) - [c20]Nai-Wen Chang, Hong-Jie Dai, Yu-Lun Hsieh, Wen-Lian Hsu:
Statistical Principle-Based Approach for Detecting miRNA-Target Gene Interaction Articles. BIBE 2016: 79-86 - 2015
- [j25]Nai-Wen Chang, Hong-Jie Dai, Jitendra Jonnagaddala, Chih-Wei Chen, Richard Tzong-Han Tsai, Wen-Lian Hsu:
A context-aware approach for progression tracking of medical concepts in electronic medical records. J. Biomed. Informatics 58: S150-S157 (2015) - 2014
- [j20]Hong-Jie Dai, Johnny Chi-Yang Wu, Josan Wei-San Lin, Aaron James F. Reyes, Mira Anne C. dela Rosa, Syed Abdul Shabbir, Richard Tzong-Han Tsai, Wen-Lian Hsu:
LiverCancerMarkerRIF: a liver cancer biomarker interactive curation system combining text mining and expert annotations. Database J. Biol. Databases Curation 2014 (2014) - [j18]Hong-Jie Dai, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Joint Learning of Entity Linking Constraints Using a Markov-Logic Network. Int. J. Comput. Linguistics Chin. Lang. Process. 19(1) (2014) - 2013
- [j17]Hong-Jie Dai, Chi-Yang Wu, Richard Tzong-Han Tsai, Wen-Harn Pan, Wen-Lian Hsu:
T-HOD: a literature-based candidate gene database for hypertension, obesity and diabetes. Database J. Biol. Databases Curation 2013 (2013) - [j16]Yung-Chun Chang, Hong-Jie Dai, Johnny Chi-Yang Wu, Jian-Ming Chen, Richard Tzong-Han Tsai, Wen-Lian Hsu:
TEMPTING system: A hybrid method of rule and machine learning for temporal relation extraction in patient discharge summaries. J. Biomed. Informatics 46(6): S54-S62 (2013) - 2012
- [j15]Hong-Jie Dai, Chun-Yu Chen, Chi-Yang Wu, Po-Ting Lai, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Coreference resolution of medical concepts in discharge summaries by exploiting contextual information. J. Am. Medical Informatics Assoc. 19(5): 888-896 (2012) - 2011
- [j14]Hong-Jie Dai, Yen-Ching Chang, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Integration of gene normalization stages and co-reference resolution using a Markov logic network. Bioinform. 27(18): 2586-2594 (2011) - [j13]Yu-Ching Fang, Po-Ting Lai, Hong-Jie Dai, Wen-Lian Hsu:
MeInfoText 2.0: gene methylation and cancer relation extraction from biomedical literature. BMC Bioinform. 12: 471 (2011) - [c12]Hong-Jie Dai, Wei-Chi Tsai, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Enhancing Search Results with Semantic Annotation Using Augmented Browsing. IJCAI 2011: 2418-2423 - [c11]Hong-Jie Dai, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Entity Disambiguation Using a Markov-Logic Network. IJCNLP 2011: 846-855 - 2010
- [c10]Hong-Jie Dai, Po-Ting Lai, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Global Ranking via Data Fusion. COLING (Posters) 2010: 223-231 - 2009
- [j9]Richard Tzong-Han Tsai, Po-Ting Lai, Hong-Jie Dai, Chi-Hsin Huang, Yue-Yang Bow, Yen-Ching Chang, Wen-Harn Pan, Wen-Lian Hsu:
HypertenGene: extracting key hypertension genes from biomedical literature with position and automatically-generated template features. BMC Bioinform. 10(S-15): 9 (2009) - [j8]Ryan T. K. Lin, Justin Liang-Te Chiu, Hong-Jie Dai, Richard Tzong-Han Tsai, Min-Yuh Day, Wen-Lian Hsu:
A supervised learning approach to biological question answering. Integr. Comput. Aided Eng. 16(3): 271-281 (2009) - [j6]Hong-Jie Dai, Yen-Ching Chang, Richard Tzong-Han Tsai, Wen-Lian Hsu:
New Challenges for Biological Text-Mining in the Next Decade. J. Comput. Sci. Technol. 25(1): 169-179 (2009) - [c9]Po-Ting Lai, Yue-Yang Bow, Chi-Hsin Huang, Hong-Jie Dai, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Using Contextual Information to Clarify Gene Normalization Ambiguity. IRI 2009: 1-5 - 2008
- [j5]Richard Tzong-Han Tsai, Hsi-Chuan Hung, Hong-Jie Dai, Yi-Wen Lin, Wen-Lian Hsu:
Exploiting likely-positive and unlabeled data to improve the identification of protein-protein interaction articles. BMC Bioinform. 9(S-1) (2008) - [j4]Richard Tzong-Han Tsai, Hong-Jie Dai, Chi-Hsin Huang, Wen-Lian Hsu:
Semi-automatic conversion of BioProp semantic annotation to PASBio annotation. BMC Bioinform. 9(S-12) (2008) - [j3]Hong-Jie Dai, Chi-Hsin Huang, Ryan T. K. Lin, Richard Tzong-Han Tsai, Wen-Lian Hsu:
BIOSMILE web search: a web application for annotating biomedical entities and relations. Nucleic Acids Res. 36(Web-Server-Issue): 390-398 (2008) - [c8]Ryan T. K. Lin, Hong-Jie Dai, Yue-Yang Bow, Min-Yuh Day, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Result identification for biomedical abstracts using Conditional Random Fields. IRI 2008: 122-126 - [c7]Ryan T. K. Lin, Justin Liang-Te Chiu, Hong-Jie Dai, Min-Yuh Day, Richard Tzong-Han Tsai, Wen-Lian Hsu:
Biological question answering with syntactic and semantic feature matching and an improved mean reciprocal ranking measurement. IRI 2008: 184-189 - [c6]Hong-Jie Dai, Chi-Hsin Huang, Jaimie Yi-Wen Lin, Pei-Hsuan Chou, Richard Tzong-Han Tsai, Wen-Lian Hsu:
A Survey of State of the Art Biomedical Text Mining Techniques for Semantic Analysis. SUTC 2008: 410-417 - 2007
- [j2]Richard Tzong-Han Tsai, Wen-Chi Chou, Ying-Shan Su, Yu-Chun Lin, Cheng-Lung Sung, Hong-Jie Dai, Irene Tzu-Hsuan Yeh, Wei Ku, Ting-Yi Sung, Wen-Lian Hsu:
BIOSMILE: A semantic role labeling system for biomedical verbs using a maximum-entropy model with automatically generated template features. BMC Bioinform. 8 (2007) - [c5]Richard Tzong-Han Tsai, Hsi-Chuan Hung, Hong-Jie Dai, Wen-Lian Hsu:
Exploiting unlabeled internal data in conditional random fields to reduce word segmentation errors for Chinese texts. INTERSPEECH 2007: 2885-2888 - [c4]Richard Tzong-Han Tsai, Hong-Jie Dai, Hsi-Chuan Hung, Ryan T. K. Lin, Wen-Chi Chou, Ying-Shan Su, Min-Yuh Day, Wen-Lian Hsu:
BESearch: A Supervised Learning Approach to Search for Molecular Event Participants. IRI 2007: 412-417 - 2006
- [j1]Richard Tzong-Han Tsai, Cheng-Lung Sung, Hong-Jie Dai, Hsieh-Chuan Hung, Ting-Yi Sung, Wen-Lian Hsu:
NERBio: using selected word conjunctions, term normalization, and global patterns to improve biomedical named entity recognition. BMC Bioinform. 7(S-5) (2006) - [c2]Richard Tzong-Han Tsai, Hsieh-Chuan Hung, Cheng-Lung Sung, Hong-Jie Dai, Wen-Lian Hsu:
On Closed Task of Chinese Word Segmentation: An Improved CRF Model Coupled with Character Clustering and Automatically Generated Template Matching. SIGHAN@COLING/ACL 2006: 134-137 - [c1]Richard Tzong-Han Tsai, Hong-Jie Dai, Hsieh-Chuan Hung, Cheng-Lung Sung, Min-Yuh Day, Wen-Lian Hsu:
Chinese word segmentation with minimal linguistic knowledge: An improved conditional random fields coupled with character clustering and automatically discovered template matching. IRI 2006: 274-279
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