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Lenore Cowen
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Publications
- 2023
- [j45]Samuel Sledzieski, Kapil Devkota, Rohit Singh, Lenore Cowen, Bonnie Berger:
TT3D: Leveraging precomputed protein 3D sequence models to predict protein-protein interactions. Bioinform. 39(10) (2023) - 2013
- [j35]Noah M. Daniels, Andrew Gallant, Jian Peng, Lenore J. Cowen, Michael Baym, Bonnie Berger:
Compressive genomics for protein databases. Bioinform. 29(13): 283-290 (2013) - 2012
- [j33]Noah M. Daniels, Raghavendra Hosur, Bonnie Berger, Lenore J. Cowen:
SMURFLite: combining simplified Markov random fields with simulated evolution improves remote homology detection for beta-structural proteins into the twilight zone. Bioinform. 28(9): 1216-1222 (2012) - 2010
- [j27]Matthew Menke, Bonnie Berger, Lenore Cowen:
Markov random fields reveal an N-terminal double beta-propeller motif as part of a bacterial hybrid two-component sensor system. Proc. Natl. Acad. Sci. USA 107(9): 4069-4074 (2010) - 2009
- [j25]Allen W. Bryan Jr., Matthew Menke, Lenore J. Cowen, Susan Lindquist, Bonnie Berger:
BETASCAN: Probable β-amyloids Identified by Pairwise Probabilistic Analysis. PLoS Comput. Biol. 5(3) (2009) - 2008
- [j22]Matthew Menke, Bonnie Berger, Lenore Cowen:
Matt: Local Flexibility Aids Protein Multiple Structure Alignment. PLoS Comput. Biol. 4(1) (2008) - 2005
- [j20]Matthew Menke, Jonathan King, Bonnie Berger, Lenore Cowen:
Wrap-and-Pack: A New Paradigm for Beta Structural Motif Recognition with Application to Recognizing Beta Trefoils. J. Comput. Biol. 12(6): 777-795 (2005) - 2004
- [c19]Matthew Menke, Eben Scanlon, Jonathan King, Bonnie Berger, Lenore Cowen:
Wrap-and-pack: a new paradigm for beta structural motif recognition with application to recognizing beta trefoils. RECOMB 2004: 298-307 - 2002
- [j15]Lenore Cowen, Phil Bradley, Matthew Menke, Jonathan King, Bonnie Berger:
Predicting the Beta-Helix Fold from Protein Sequence Data. J. Comput. Biol. 9(2): 261-276 (2002) - 2001
- [c16]Phil Bradley, Lenore Cowen, Matthew Menke, Jonathan King, Bonnie Berger:
Predicting the beta-helix fold from protein sequence data. RECOMB 2001: 59-67 - 1998
- [j10]Baruch Awerbuch, Bonnie Berger, Lenore Cowen, David Peleg:
Near-Linear Time Construction of Sparse Neighborhood Covers. SIAM J. Comput. 28(1): 263-277 (1998) - 1996
- [j7]Baruch Awerbuch, Bonnie Berger, Lenore Cowen, David Peleg:
Fast Distributed Network Decompositions and Covers. J. Parallel Distributed Comput. 39(2): 105-114 (1996) - 1995
- [j5]Bonnie Berger, Lenore Cowen:
Scheduling with Concurrency-Based Constraints. J. Algorithms 18(1): 98-123 (1995) - 1994
- [j3]Baruch Awerbuch, Bonnie Berger, Lenore Cowen, David Peleg:
Low-Diameter Graph Decomposition Is in NC. Random Struct. Algorithms 5(3): 441-452 (1994) - 1993
- [c6]Baruch Awerbuch, Bonnie Berger, Lenore Cowen, David Peleg:
Near-Linear Cost Sequential and Distribured Constructions of Sparse Neighborhood Covers. FOCS 1993: 638-647 - 1992
- [c5]Baruch Awerbuch, Bonnie Berger, Lenore Cowen, David Peleg:
Fast Network Decomposition (Extended Abstract). PODC 1992: 169-177 - [c4]Baruch Awerbuch, Bonnie Berger, Lenore Cowen, David Peleg:
Low-Diameter Graph Decomposition is in NC. SWAT 1992: 83-93 - 1991
- [c3]Bonnie Berger, Lenore Cowen:
Complexity Results and Algorithms for { <, <=, = }-Constrained Scheduling. SODA 1991: 137-147
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