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ORCIDTimothy M. McPhillips
- > Home > Persons > Timothy M. McPhillips
Publications
- 2021
[c26]Nikolaus Nova Parulian, Timothy M. McPhillips, Bertram Ludäscher:
A Model and System for Querying Provenance from Data Cleaning Workflows. IPAW 2021: 183-197- [c25]Timothy M. McPhillips, Thomas Thelen, Craig Willis, Kacper Kowalik, Matthew B. Jones, Bertram Ludäscher:
CPR-A Comprehensible Provenance Record for Verification Workflows in Whole Tale. IPAW 2021: 263-269 - [c24]George Alter, Jack Gager, Pascal Heus, Carson Hunter, Sanda Ionescu, Jeremy Iverson, H. V. Jagadish, Bertram Ludäscher, Jared Lyle, Timothy M. McPhillips, Alexander Mueller, Sigve Nordgaard, Ørnulf Risnes, Dan J. Smith
, Jie Song, Thomas Thelen:
Detailed Provenance Metadata from Statistical Analysis Software: TaPP Applications Track. TaPP 2021 - 2020
- [i3]Kyle Chard, Niall Gaffney, Mihael Hategan, Kacper Kowalik, Bertram Ludäscher, Timothy M. McPhillips, Jarek Nabrzyski, Victoria Stodden, Ian J. Taylor, Thomas Thelen, Matthew J. Turk, Craig Willis:
Toward Enabling Reproducibility for Data-Intensive Research using the Whole Tale Platform. CoRR abs/2005.06087 (2020) - 2019
- [c23]Timothy M. McPhillips, Craig Willis, Michael R. Gryk, Santiago Núñez Corrales, Bertram Ludäscher:
Reproducibility by Other Means: Transparent Research Objects. eScience 2019: 502-509 - [c22]Kyle Chard, Thomas Thelen, Matthew J. Turk, Craig Willis, Niall Gaffney, Matthew B. Jones, Kacper Kowalik, Bertram Ludäscher, Timothy M. McPhillips, Jarek Nabrzyski, Victoria Stodden, Ian J. Taylor:
Application of BagIt-Serialized Research Object Bundles for Packaging and Re-Execution of Computational Analyses. eScience 2019: 514-521 - [c21]Kyle Chard, Niall Gaffney, Mihael Hategan, Kacper Kowalik, Bertram Ludäscher, Timothy M. McPhillips, Jarek Nabrzyski, Victoria Stodden, Ian J. Taylor, Thomas Thelen, Matthew J. Turk, Craig Willis:
Toward Enabling Reproducibility for Data-Intensive Research Using the Whole Tale Platform. PARCO 2019: 766-778 - [c20]Timothy M. McPhillips, Lan Li, Nikolaus Nova Parulian, Bertram Ludäscher:
Modeling Provenance and Understanding Reproducibility for OpenRefine Data Cleaning Workflows. TaPP 2019 - 2018
- [c19]Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher:
Validation and Inference of Schema-Level Workflow Data-Dependency Annotations. IPAW 2018: 128-141 - [r2]Bertram Ludäscher, Shawn Bowers, Timothy M. McPhillips:
Scientific Workflows. Encyclopedia of Database Systems (2nd ed.) 2018 - [i2]Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher:
Validation and Inference of Schema-Level Workflow Data-Dependency Annotations. CoRR abs/1807.09899 (2018) - 2017
- [j10]Qian Zhang, Yang Cao, Qiwen Wang, Duc Vu, Priyaa Thavasimani, Timothy M. McPhillips, Paolo Missier, Peter Slaughter, Christopher Jones, Matthew B. Jones, Bertram Ludäscher:
Revealing the Detailed Lineage of Script Outputs Using Hybrid Provenance. Int. J. Digit. Curation 12(2): 390-408 (2017) - 2016
- [c18]João Felipe Pimentel, Saumen C. Dey, Timothy M. McPhillips, Khalid Belhajjame, David Koop, Leonardo Murta, Vanessa Braganholo, Bertram Ludäscher:
Yin & Yang: Demonstrating Complementary Provenance from noWorkflow & YesWorkflow. IPAW 2016: 161-165 - [c17]Yang Cao, Christopher Jones, Víctor Cuevas-Vicenttín, Matthew B. Jones, Bertram Ludäscher, Timothy M. McPhillips, Paolo Missier, Christopher R. Schwalm, Peter Slaughter, David Vieglais, Lauren Walker, Yaxing Wei:
DataONE: A Data Federation with Provenance Support. IPAW 2016: 230-234 - 2015
- [c16]Timothy M. McPhillips, Shawn Bowers, Khalid Belhajjame, Bertram Ludäscher:
Retrospective Provenance Without a Runtime Provenance Recorder. TaPP 2015 - [i1]Timothy M. McPhillips, Tianhong Song, Tyler Kolisnik, Steve Aulenbach, Khalid Belhajjame, Kyle Bocinsky, Yang Cao, Fernando Chirigati, Saumen C. Dey, Juliana Freire, Deborah N. Huntzinger, Christopher Jones, David Koop, Paolo Missier, Mark Schildhauer, Christopher R. Schwalm, Yaxing Wei, James Cheney, Mark Bieda, Bertram Ludäscher:
YesWorkflow: A User-Oriented, Language-Independent Tool for Recovering Workflow Information from Scripts. CoRR abs/1502.02403 (2015) - 2012
- [j9]Thomas Stropp, Timothy M. McPhillips, Bertram Ludäscher, Mark Bieda:
Workflows for microarray data processing in the Kepler environment. BMC Bioinform. 13: 102 (2012) - [j8]Paolo Missier, Bertram Ludäscher, Saumen C. Dey, Michael Wang, Timothy M. McPhillips, Shawn Bowers, Michael Agun, Ilkay Altintas:
Golden Trail: Retrieving the Data History that Matters from a Comprehensive Provenance Repository. Int. J. Digit. Curation 7(1): 139-150 (2012) - [c15]Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher:
Declarative Rules for Inferring Fine-Grained Data Provenance from Scientific Workflow Execution Traces. IPAW 2012: 82-96 - 2011
- [c14]Daniel Zinn, Quinn J. Hart, Timothy M. McPhillips, Bertram Ludäscher, Yogesh Simmhan, Michail Giakkoupis, Viktor K. Prasanna:
Towards Reliable, Performant Workflows for Streaming-Applications on Cloud Platforms. CCGRID 2011: 235-244 - [c13]Lei Dou, Daniel Zinn, Timothy M. McPhillips, Sven Köhler, Sean Riddle, Shawn Bowers, Bertram Ludäscher:
Scientific workflow design 2.0: Demonstrating streaming data collections in Kepler. ICDE 2011: 1296-1299 - [c12]Sven Köhler, Sean Riddle, Daniel Zinn, Timothy M. McPhillips, Bertram Ludäscher:
Improving Workflow Fault Tolerance through Provenance-Based Recovery. SSDBM 2011: 207-224 - 2010
- [j7]Amber L. Hartman, Sean Riddle, Timothy M. McPhillips, Bertram Ludäscher, Jonathan A. Eisen:
WATERS: a Workflow for the Alignment, Taxonomy, and Ecology of Ribosomal Sequences. BMC Bioinform. 11: 317 (2010) - 2009
- [j6]Timothy M. McPhillips, Shawn Bowers, Daniel Zinn, Bertram Ludäscher:
Scientific workflow design for mere mortals. Future Gener. Comput. Syst. 25(5): 541-551 (2009) - [c11]Bertram Ludäscher, Mathias Weske, Timothy M. McPhillips, Shawn Bowers:
Scientific Workflows: Business as Usual? BPM 2009: 31-47 - [c10]Manish Kumar Anand, Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher:
Efficient provenance storage over nested data collections. EDBT 2009: 958-969 - [c9]Daniel Zinn, Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher:
X-CSR: Dataflow Optimization for Distributed XML Process Pipelines. ICDE 2009: 577-580 - [c8]Daniel Zinn, Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher:
Scientific workflow design with data assembly lines. SC-WORKS 2009 - [c7]Manish Kumar Anand, Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher:
Exploring Scientific Workflow Provenance Using Hybrid Queries over Nested Data and Lineage Graphs. SSDBM 2009: 237-254 - [p1]Bertram Ludäscher, Ilkay Altintas, Shawn Bowers, Julian Cummings, Terence Critchlow, Ewa Deelman, David De Roure, Juliana Freire, Carole A. Goble, Matthew B. Jones, Scott Klasky, Timothy M. McPhillips, Norbert Podhorszki, Cláudio T. Silva, Ian J. Taylor, Mladen A. Vouk:
Scientific Process Automation and Workflow Management. Scientific Data Management 2009 - [r1]Bertram Ludäscher, Shawn Bowers, Timothy M. McPhillips:
Scientific Workflows. Encyclopedia of Database Systems 2009: 2507-2511 - 2008
- [j5]Luc Moreau, Bertram Ludäscher, Ilkay Altintas, Roger S. Barga, Shawn Bowers, Steven P. Callahan, George Chin Jr., Ben Clifford, Shirley Cohen, Sarah Cohen Boulakia, Susan B. Davidson, Ewa Deelman, Luciano A. Digiampietri, Ian T. Foster, Juliana Freire, James Frew, Joe Futrelle, Tara Gibson, Yolanda Gil, Carole A. Goble, Jennifer Golbeck, Paul Groth, David A. Holland, Sheng Jiang, Jihie Kim, David Koop, Ales Krenek, Timothy M. McPhillips, Gaurang Mehta, Simon Miles, Dominic Metzger, Steve Munroe, Jim Myers, Beth Plale, Norbert Podhorszki, Varun Ratnakar, Emanuele Santos, Carlos Eduardo Scheidegger, Karen Schuchardt, Margo I. Seltzer, Yogesh L. Simmhan, Cláudio T. Silva, Peter Slaughter, Eric G. Stephan, Robert Stevens, Daniele Turi, Huy T. Vo, Michael Wilde, Jun Zhao, Yong Zhao:
Special Issue: The First Provenance Challenge. Concurr. Comput. Pract. Exp. 20(5): 409-418 (2008) - [j4]Bertram Ludäscher, Norbert Podhorszki, Ilkay Altintas, Shawn Bowers, Timothy M. McPhillips:
From computation models to models of provenance: the RWS approach. Concurr. Comput. Pract. Exp. 20(5): 507-518 (2008) - [j3]Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher:
Provenance in collection-oriented scientific workflows. Concurr. Comput. Pract. Exp. 20(5): 519-529 (2008) - [c6]Shawn Bowers, Timothy M. McPhillips, Sean Riddle, Manish Kumar Anand, Bertram Ludäscher:
Kepler/pPOD: Scientific Workflow and Provenance Support for Assembling the Tree of Life. IPAW 2008: 70-77 - 2007
- [j2]Susan B. Davidson, Sarah Cohen Boulakia, Anat Eyal, Bertram Ludäscher, Timothy M. McPhillips, Shawn Bowers, Manish Kumar Anand, Juliana Freire:
Provenance in Scientific Workflow Systems. IEEE Data Eng. Bull. 30(4): 44-50 (2007) - [c4]Shawn Bowers, Timothy M. McPhillips, Martin Wu, Bertram Ludäscher:
Project Histories: Managing Data Provenance Across Collection-Oriented Scientific Workflow Runs. DILS 2007: 122-138 - 2006
- [c3]Timothy M. McPhillips, Shawn Bowers, Bertram Ludäscher:
Collection-Oriented Scientific Workflows for Integrating and Analyzing Biological Data. DILS 2006: 248-263 - [c2]Bertram Ludäscher, Shawn Bowers, Timothy M. McPhillips, Norbert Podhorszki:
Scientific Workflows: More e-Science Mileage from Cyberinfrastructure. e-Science 2006: 145 - [c1]Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher, Shirley Cohen, Susan B. Davidson:
A Model for User-Oriented Data Provenance in Pipelined Scientific Workflows. IPAW 2006: 133-147
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