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Joel Dudley
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Publications
- 2021
- [j32]Ramya Dhatri Vunikili, Benjamin S. Glicksberg, Kipp W. Johnson, Joel T. Dudley, Lakshminarayanan Subramanian, Khader Shameer:
Predictive Modelling of Susceptibility to Substance Abuse, Mortality and Drug-Drug Interactions in Opioid Patients. Frontiers Artif. Intell. 4: 742723 (2021) - [j31]Jessica K. De Freitas, Kipp W. Johnson, Eddye Golden, Girish N. Nadkarni, Joel T. Dudley, Erwin P. Bottinger, Benjamin S. Glicksberg, Riccardo Miotto:
Phe2vec: Automated disease phenotyping based on unsupervised embeddings from electronic health records. Patterns 2(9): 100337 (2021) - 2020
- [j30]Andrew C. Liu, Krishna Patel, Ramya Dhatri Vunikili, Kipp W. Johnson, Fahad Abdu, Shivani Kamath Belman, Benjamin S. Glicksberg, Pratyush Tandale, Roberto Fontanez, Oommen K. Mathew, Andrew Kasarskis, Priyabrata Mukherjee, Lakshminarayanan Subramanian, Joel T. Dudley, Khader Shameer:
Sepsis in the era of data-driven medicine: personalizing risks, diagnoses, treatments and prognoses. Briefings Bioinform. 21(4): 1182-1195 (2020) - [j29]Hao-Chih Lee, Osamu Ichikawa, Benjamin S. Glicksberg, Aparna A. Divaraniya, Christine E. Becker, Pankaj Agarwal, Joel T. Dudley:
Identification of therapeutic targets from genetic association studies using hierarchical component analysis. BioData Min. 13(1): 6 (2020) - [j28]Isotta Landi, Benjamin S. Glicksberg, Hao-Chih Lee, Sarah T. Cherng, Giulia Landi, Matteo Danieletto, Joel T. Dudley, Cesare Furlanello, Riccardo Miotto:
Deep representation learning of electronic health records to unlock patient stratification at scale. npj Digit. Medicine 3 (2020) - [j27]Fayzan F. Chaudhry, Matteo Danieletto, Eddye Golden, Jerome R. Scelza, Greg Botwin, Mark M. Shervey, Jessica K. De Freitas, Ishan Paranjpe, Girish N. Nadkarni, Riccardo Miotto, Patricia Glowe, Greg Stock, Bethany Percha, Noah Zimmerman, Joel T. Dudley, Benjamin S. Glicksberg:
Sleep in the Natural Environment: A Pilot Study. Sensors 20(5): 1378 (2020) - [i6]Isotta Landi, Benjamin S. Glicksberg, Hao-Chih Lee, Sarah T. Cherng, Giulia Landi, Matteo Danieletto, Joel T. Dudley, Cesare Furlanello, Riccardo Miotto:
Deep Representation Learning of Electronic Health Records to Unlock Patient Stratification at Scale. CoRR abs/2003.06516 (2020) - 2019
- [j26]Marcus A. Badgeley, Manway Liu, Benjamin S. Glicksberg, Mark M. Shervey, John R. Zech, Khader Shameer, Joseph Lehar, Eric K. Oermann, Michael V. McConnell, Thomas M. Snyder, Joel T. Dudley:
CANDI: an R package and Shiny app for annotating radiographs and evaluating computer-aided diagnosis. Bioinform. 35(9): 1610-1612 (2019) - [j25]Benjamin S. Glicksberg, Boris Oskotsky, Phyllis M. Thangaraj, Nicholas Giangreco, Marcus A. Badgeley, Kipp W. Johnson, Debajyoti Datta, Vivek A. Rudrapatna, Nadav Rappoport, Mark M. Shervey, Riccardo Miotto, Theodore C. Goldstein, Eugenia Rutenberg, Remi Frazier, Nelson Lee, Sharat Israni, Rick Larsen, Bethany Percha, Li Li, Joel T. Dudley, Nicholas P. Tatonetti, Atul J. Butte:
PatientExploreR: an extensible application for dynamic visualization of patient clinical history from electronic health records in the OMOP common data model. Bioinform. 35(21): 4515-4518 (2019) - [j24]Marcus A. Badgeley, John R. Zech, Luke Oakden-Rayner, Benjamin S. Glicksberg, Manway Liu, William Gale, Michael V. McConnell, Bethany Percha, Thomas M. Snyder, Joel T. Dudley:
Deep learning predicts hip fracture using confounding patient and healthcare variables. npj Digit. Medicine 2 (2019) - [c18]Kipp W. Johnson, Jessica K. De Freitas, Benjamin S. Glicksberg, Jason R. Bobe, Joel T. Dudley:
Evaluation of patient re-identification using laboratory test orders and mitigation via latent space variables. PSB 2019: 415-426 - 2018
- [j23]Khader Shameer, Benjamin S. Glicksberg, Rachel Hodos, Kipp W. Johnson, Marcus A. Badgeley, Ben Readhead, Max S. Tomlinson, Timothy O'Connor, Riccardo Miotto, Brian A. Kidd, Rong Chen, Avi Ma'ayan, Joel T. Dudley:
Systematic analyses of drugs and disease indications in RepurposeDB reveal pharmacological, biological and epidemiological factors influencing drug repositioning. Briefings Bioinform. 19(4): 656-678 (2018) - [j20]Khader Shameer, M. Mercedes Perez-Rodriguez, Roy Bachar, Li Li, Amy Johnson, Kipp W. Johnson, Benjamin S. Glicksberg, Milo R. Smith, Ben Readhead, Joseph Scarpa, Jebakumar Jebakaran, Patricia H. Kovatch, Sabina Lim, Wayne K. Goodman, David L. Reich, Andrew Kasarskis, Nicholas P. Tatonetti, Joel T. Dudley:
Pharmacological risk factors associated with hospital readmission rates in a psychiatric cohort identified using prescriptome data mining. BMC Medical Informatics Decis. Mak. 18(S-3): 79:1-79:11 (2018) - [c17]Venet Osmani, Li Li, Matteo Danieletto, Benjamin S. Glicksberg, Joel Dudley, Oscar Mayora:
Automatic processing of Electronic Medical Records using Deep Learning. PervasiveHealth 2018: 251-257 - [c15]Milo R. Smith, Benjamin S. Glicksberg, Li Li, Rong Chen, Hirofumi Morishita, Joel T. Dudley:
Loss-of-function of neuroplasticity-related genes confers risk for human neurodevelopmental disorders. PSB 2018: 68-79 - [c14]Benjamin S. Glicksberg, Riccardo Miotto, Kipp W. Johnson, Khader Shameer, Li Li, Rong Chen, Joel T. Dudley:
Automated disease cohort selection using word embeddings from Electronic Health Records. PSB 2018: 145-156 - [c13]Kipp W. Johnson, Benjamin S. Glicksberg, Rachel Hodos, Khader Shameer, Joel T. Dudley:
Causal inference on electronic health records to assess blood pressure treatment targets: An application of the parametric g formula. PSB 2018: 180-191 - [i2]Venet Osmani, Li Li, Matteo Danieletto, Benjamin S. Glicksberg, Joel Dudley, Oscar Mayora:
Processing of Electronic Health Records using Deep Learning: A review. CoRR abs/1804.01758 (2018) - [i1]Marcus A. Badgeley, John R. Zech, Luke Oakden-Rayner, Benjamin S. Glicksberg, Manway Liu, William Gale, Michael V. McConnell, Beth Percha, Thomas M. Snyder, Joel T. Dudley:
Deep Learning Predicts Hip Fracture using Confounding Patient and Healthcare Variables. CoRR abs/1811.03695 (2018) - 2017
- [j18]Khader Shameer, Marcus A. Badgeley, Riccardo Miotto, Benjamin S. Glicksberg, Joseph W. Morgan, Joel T. Dudley:
Translational bioinformatics in the era of real-time biomedical, health care and wellness data streams. Briefings Bioinform. 18(1): 105-124 (2017) - [j16]Zichen Wang, Li Li, Benjamin S. Glicksberg, Ariel Israel, Joel T. Dudley, Avi Ma'ayan:
Predicting age by mining electronic medical records with deep learning characterizes differences between chronological and physiological age. J. Biomed. Informatics 76: 59-68 (2017) - 2016
- [j14]Benjamin S. Glicksberg, Li Li, Marcus A. Badgeley, Khader Shameer, Roman Kosoy, Noam D. Beckmann, Nam Pho, Jörg Hakenberg, Meng Ma, Kristin L. Ayers, Gabriel E. Hoffman, Shuyu Dan Li, Eric E. Schadt, Chirag J. Patel, Rong Chen, Joel T. Dudley:
Comparative analyses of population-scale phenomic data in electronic medical records reveal race-specific disease networks. Bioinform. 32(12): 101-110 (2016) - 2015
- [c6]Benjamin S. Glicksberg, Li Li, Wei-Yi Cheng, Khader Shameer, Jörg Hakenberg, Rafael Castellanos, Meng Ma, Lisong Shi, Hardik Shah, Joel T. Dudley, Rong Chen:
An Integrative Pipeline for Multi-Modal Discovery of Disease Relationships. Pacific Symposium on Biocomputing 2015: 407-418
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