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Inanç Birol

Name: dblp XML data dump
Creator: Schloss Dagstuhl - Leibniz Center for Informatics
Published: 1993
License: https://creativecommons.org/publicdomain/zero/1.0/
Keywords: dblp, XML, computer science, scholarly publications, metadata

◀ ▶ joint publications with Shaun D. Jackman

> Home > Persons > Inanç Birol

Publications

2019
[j24]
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  - journals/bioinformatics/JackmanMCOBBJ19
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  - https://dblp.org/rec/journals/bioinformatics/JackmanMCOBBJ19
Shaun D. Jackman, Tatyana Mozgacheva, Susie Chen, Brendan O'Huiginn, Lance Bailey, Inanç Birol, Steven J. M. Jones:
ORCA: a comprehensive bioinformatics container environment for education and research. Bioinform. 35(21): 4448-4450 (2019)
2018
[j21]
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  - journals/bmcbi/CoombeZVCJBW18
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  - https://dblp.org/rec/journals/bmcbi/CoombeZVCJBW18
Lauren Coombe, Jessica Zhang, Benjamin P. Vandervalk, Justin Chu, Shaun D. Jackman, Inanç Birol, René L. Warren:
ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers. BMC Bioinform. 19(1): 234:1-234:10 (2018)
[j20]
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  - journals/bmcbi/JackmanCCWVYXMB18
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Shaun D. Jackman, Lauren Coombe, Justin Chu, René L. Warren, Benjamin P. Vandervalk, Sarah Yeo, Zhuyi Xue, Hamid Mohamadi, Jörg Bohlmann, Steven J. M. Jones, Inanç Birol:
Tigmint: correcting assembly errors using linked reads from large molecules. BMC Bioinform. 19(1): 393:1-393:10 (2018)
2015
[j14]
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  - journals/bmcbi/PaulinoWVRJB15
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  - https://dblp.org/rec/journals/bmcbi/PaulinoWVRJB15
Daniel Paulino, René L. Warren, Benjamin P. Vandervalk, Anthony Raymond, Shaun D. Jackman, Inanç Birol:
Sealer: a scalable gap-closing application for finishing draft genomes. BMC Bioinform. 16: 230:1-230:8 (2015)
[c4]
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  - conf/psb/BirolRCNJKDERK15
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Inanç Birol, Anthony Raymond, Readman Chiu, Ka Ming Nip, Shaun D. Jackman, Maayan Kreitzman, T. Roderick Docking, Catherine A. Ennis, A. Gordon Robertson, Aly Karsan:
KLEAT: Cleavage Site Analysis of Transcriptomes. Pacific Symposium on Biocomputing 2015: 347-358
2014
[j13]
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  - journals/bioinformatics/ChuSRJNMMBRB14
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Justin Chu, Sara Sadeghi, Anthony Raymond, Shaun D. Jackman, Ka Ming Nip, Richard Mar, Hamid Mohamadi, Yaron S. N. Butterfield, A. Gordon Robertson, Inanç Birol:
BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters. Bioinform. 30(23): 3402-3404 (2014)
[c3]
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  - conf/bibm/BirolMRRCVJW14
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Inanç Birol, Hamid Mohamadi, Anthony Raymond, Karthika Raghavan, Justin Chu, Benjamin P. Vandervalk, Shaun D. Jackman, René L. Warren:
Spaced seed data structures. BIBM 2014: 15-22
[c2]
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  - conf/bibm/VandervalkJRMYACWB14
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Benjamin P. Vandervalk, Shaun D. Jackman, Anthony Raymond, Hamid Mohamadi, Chen Yang, Dean A. Attali, Justin Chu, René L. Warren, Inanç Birol:
Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph. BIBM 2014: 51-58
2013
[j12]
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  - journals/bioinformatics/BirolRJPCTYKBVKPMZMJYRBBRMBJ13
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Inanç Birol, Anthony Raymond, Shaun D. Jackman, Stephen Pleasance, Robin Coope, Greg A. Taylor, Macaire Man Saint Yuen, Christopher I. Keeling, Dana Brand, Benjamin P. Vandervalk, Heather Kirk, Pawan Pandoh, Richard A. Moore, Yongjun Zhao, Andrew J. Mungall, Barry Jaquish, Alvin Yanchuk, Carol Ritland, Brian Boyle, Jean Bousquet, Kermit Ritland, John MacKay, Jörg Bohlmann, Steven J. M. Jones:
Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data. Bioinform. 29(12): 1492-1497 (2013)
2009
[j4]
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  - journals/bioinformatics/BirolJNQVSMZHSHCGMJ09
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Inanç Birol, Shaun D. Jackman, Cydney B. Nielsen, Jenny Q. Qian, Richard Varhol, Greg Stazyk, Ryan D. Morin, Yongjun Zhao, Martin Hirst, Jacqueline E. Schein, Douglas E. Horsman, Joseph M. Connors, Randy D. Gascoyne, Marco A. Marra, Steven J. M. Jones:
De novo transcriptome assembly with ABySS. Bioinform. 25(21): 2872-2877 (2009)
[j3]
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  - journals/tvcg/NielsenJBJ09
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Cydney B. Nielsen, Shaun D. Jackman, Inanç Birol, Steven J. M. Jones:
ABySS-Explorer: Visualizing Genome Sequence Assemblies. IEEE Trans. Vis. Comput. Graph. 15(6): 881-888 (2009)

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