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Xiaoning Qian
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Publications
- 2024
- [j86]Shahin Boluki, Siamak Zamani Dadaneh, Edward R. Dougherty, Xiaoning Qian:
Bayesian Proper Orthogonal Decomposition for Learnable Reduced-Order Models With Uncertainty Quantification. IEEE Trans. Artif. Intell. 5(3): 1162-1173 (2024) - 2023
- [j85]Puhua Niu, Maria J. Soto, Shuai Huang, Byung-Jun Yoon, Edward R. Dougherty, Francis J. Alexander, Ian Blaby, Xiaoning Qian:
Sensitivity Analysis of Genome-Scale Metabolic Flux Prediction. J. Comput. Biol. 30(7): 751-765 (2023) - [j84]Xiaoning Qian, Byung-Jun Yoon, Raymundo Arróyave, Xiaofeng Qian, Edward R. Dougherty:
Knowledge-driven learning, optimization, and experimental design under uncertainty for materials discovery. Patterns 4(11): 100863 (2023) - [j83]Hyun-Myung Woo, Xiaoning Qian, Li Tan, Shantenu Jha, Francis J. Alexander, Edward R. Dougherty, Byung-Jun Yoon:
Optimal decision-making in high-throughput virtual screening pipelines. Patterns 4(11): 100875 (2023) - [i37]Xihaier Luo, Sean McCorkle, Gilchan Park, Vanessa López-Marrero, Shinjae Yoo, Edward R. Dougherty, Xiaoning Qian, Francis J. Alexander, Byung-Jun Yoon:
Comprehensive analysis of gene expression profiles to radiation exposure reveals molecular signatures of low-dose radiation response. CoRR abs/2301.01769 (2023) - 2022
- [j79]Omar Maddouri, Xiaoning Qian, Francis J. Alexander, Edward R. Dougherty, Byung-Jun Yoon:
Robust importance sampling for error estimation in the context of optimal Bayesian transfer learning. Patterns 3(3): 100428 (2022) - [c83]Xihaier Luo, Sean McCorkle, Gilchan Park, Vanessa López-Marrero, Shinjae Yoo, Edward R. Dougherty, Xiaoning Qian, Francis J. Alexander, Byung-Jun Yoon:
Comprehensive analysis of gene expression profiles to radiation exposure reveals molecular signatures of low-dose radiation response. BIBM 2022: 2366-2374 - [c81]Mingzhou Fan, Byung-Jun Yoon, Francis J. Alexander, Edward R. Dougherty, Xiaoning Qian:
Adaptive Group Testing with Mismatched Models. ICASSP 2022: 4533-4537 - 2021
- [j78]Byung-Jun Yoon, Xiaoning Qian, Edward R. Dougherty:
Quantifying the Multi-Objective Cost of Uncertainty. IEEE Access 9: 80351-80359 (2021) - [j77]Shahin Boluki, Xiaoning Qian, Edward R. Dougherty:
Optimal Bayesian supervised domain adaptation for RNA sequencing data. Bioinform. 37(19): 3212-3219 (2021) - [j73]Alireza Karbalayghareh, Xiaoning Qian, Edward R. Dougherty:
Optimal Bayesian Transfer Learning for Count Data. IEEE ACM Trans. Comput. Biol. Bioinform. 18(2): 644-655 (2021) - [c75]Guang Zhao, Edward R. Dougherty, Byung-Jun Yoon, Francis J. Alexander, Xiaoning Qian:
Bayesian Active Learning by Soft Mean Objective Cost of Uncertainty. AISTATS 2021: 3970-3978 - [c72]Guang Zhao, Edward R. Dougherty, Byung-Jun Yoon, Francis J. Alexander, Xiaoning Qian:
Uncertainty-aware Active Learning for Optimal Bayesian Classifier. ICLR 2021 - [c71]Guang Zhao, Edward R. Dougherty, Byung-Jun Yoon, Francis J. Alexander, Xiaoning Qian:
Efficient Active Learning for Gaussian Process Classification by Error Reduction. NeurIPS 2021: 9734-9746 - [i24]Omar Maddouri, Xiaoning Qian, Francis J. Alexander, Edward R. Dougherty, Byung-Jun Yoon:
Robust Importance Sampling for Error Estimation in the Context of Optimal Bayesian Transfer Learning. CoRR abs/2109.02150 (2021) - [i23]Hyun-Myung Woo, Xiaoning Qian, Li Tan, Shantenu Jha, Francis J. Alexander, Edward R. Dougherty, Byung-Jun Yoon:
Optimal Decision Making in High-Throughput Virtual Screening Pipelines. CoRR abs/2109.11683 (2021) - 2020
- [j69]Guang Zhao, Xiaoning Qian, Byung-Jun Yoon, Francis J. Alexander, Edward R. Dougherty:
Model-Based Robust Filtering and Experimental Design for Stochastic Differential Equation Systems. IEEE Trans. Signal Process. 68: 3849-3859 (2020) - [i16]Byung-Jun Yoon, Xiaoning Qian, Edward R. Dougherty:
Quantifying the multi-objective cost of uncertainty. CoRR abs/2010.04653 (2020) - 2019
- [j68]Shahin Boluki, Xiaoning Qian, Edward R. Dougherty:
Experimental Design via Generalized Mean Objective Cost of Uncertainty. IEEE Access 7: 2223-2230 (2019) - [j63]Shahin Boluki, Siamak Zamani Dadaneh, Xiaoning Qian, Edward R. Dougherty:
Optimal clustering with missing values. BMC Bioinform. 20-S(12): 321:1-321:10 (2019) - [j60]Shahin Boluki, Mohammad Shahrokh Esfahani, Xiaoning Qian, Edward R. Dougherty:
Constructing Pathway-Based Priors within a Gaussian Mixture Model for Bayesian Regression and Classification. IEEE ACM Trans. Comput. Biol. Bioinform. 16(2): 524-537 (2019) - [i13]Shahin Boluki, Siamak Zamani Dadaneh, Xiaoning Qian, Edward R. Dougherty:
Optimal Clustering with Missing Values. CoRR abs/1902.09694 (2019) - 2018
- [j55]Roozbeh Dehghannasiri, Xiaoning Qian, Edward R. Dougherty:
A Bayesian robust Kalman smoothing framework for state-space models with uncertain noise statistics. EURASIP J. Adv. Signal Process. 2018: 55 (2018) - [j51]Roozbeh Dehghannasiri, Xiaoning Qian, Edward R. Dougherty:
Intrinsically Bayesian robust Karhunen-Loève compression. Signal Process. 144: 311-322 (2018) - [j50]Alireza Karbalayghareh, Xiaoning Qian, Edward R. Dougherty:
Optimal Bayesian Transfer Regression. IEEE Signal Process. Lett. 25(11): 1655-1659 (2018) - [j48]Roozbeh Dehghannasiri, Mohammad Shahrokh Esfahani, Xiaoning Qian, Edward R. Dougherty:
Optimal Bayesian Kalman Filtering With Prior Update. IEEE Trans. Signal Process. 66(8): 1982-1996 (2018) - [j47]Alireza Karbalayghareh, Xiaoning Qian, Edward R. Dougherty:
Optimal Bayesian Transfer Learning. IEEE Trans. Signal Process. 66(14): 3724-3739 (2018) - [j46]Siamak Zamani Dadaneh, Edward R. Dougherty, Xiaoning Qian:
Optimal Bayesian Classification With Missing Values. IEEE Trans. Signal Process. 66(16): 4182-4192 (2018) - [c55]Roozbeh Dehghannasiri, Xiaoning Qian, Edward R. Dougherty:
Robust Smoothing for State-Space Models with Unknown Noise Statistics. ACSSC 2018: 1024-1028 - [c54]Shahin Boluki, Siamak Zamani Dadaneh, Xiaoning Qian, Edward R. Dougherty:
Optimal Clustering with Missing Values. BCB 2018: 593-594 - [c53]Ehsan Hajiramezanali, Mahdi Imani, Ulisses M. Braga-Neto, Xiaoning Qian, Edward R. Dougherty:
Scalable Optimal Bayesian Classification of Single-Cell Trajectories under Regulatory Model Uncertainty. BCB 2018: 596-597 - [i7]Alireza Karbalayghareh, Xiaoning Qian, Edward R. Dougherty:
Optimal Bayesian Transfer Learning. CoRR abs/1801.00857 (2018) - 2017
- [j45]Shahin Boluki, Mohammad Shahrokh Esfahani, Xiaoning Qian, Edward R. Dougherty:
Incorporating biological prior knowledge for Bayesian learning via maximal knowledge-driven information priors. BMC Bioinform. 18(14): 61-80 (2017) - [j39]Roozbeh Dehghannasiri, Xiaoning Qian, Edward R. Dougherty:
Optimal experimental design in the context of canonical expansions. IET Signal Process. 11(8): 942-951 (2017) - [c49]Roozbeh Dehghannasiri, Mohammad Shahrokh Esfahani, Xiaoning Qian, Edward R. Dougherty:
Bayesian Kalman filtering in the presence of unknown noise statistics using factor graphs. ACSSC 2017: 166-170 - [c48]Roozbeh Dehghannasiri, Xiaoning Qian, Edward R. Dougherty:
An objective-based experimental design framework for signal processing in the context of canonical expansions. ACSSC 2017: 789-793 - 2016
- [j30]Xiaoning Qian, Edward R. Dougherty:
Bayesian Regression With Network Prior: Optimal Bayesian Filtering Perspective. IEEE Trans. Signal Process. 64(23): 6243-6253 (2016) - [c40]Roozbeh Dehghannasiri, Xiaoning Qian, Edward R. Dougherty:
Optimal experimental design in canonical expansions with applications to signal compression. GlobalSIP 2016: 94-98 - [p1]Xiaoning Qian, Byung-Jun Yoon, Edward R. Dougherty:
Inference of gene regulatory networks: validation and uncertainty. Big Data over Networks 2016: 337-364 - 2013
- [j17]Byung-Jun Yoon, Xiaoning Qian, Edward R. Dougherty:
Quantifying the Objective Cost of Uncertainty in Complex Dynamical Systems. IEEE Trans. Signal Process. 61(9): 2256-2266 (2013) - [c26]Xiaoning Qian, Edward R. Dougherty:
Phenotypically constrained Boolean network inference with prescribed steady states. GENSiPS 2013: 82-83 - 2012
- [j15]Xiaoning Qian, Edward R. Dougherty:
Intervention in Gene Regulatory Networks via Phenotypically Constrained Control Policies Based on Long-Run Behavior. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 123-136 (2012) - [c15]Xiaoning Qian, Byung-Jun Yoon, Edward R. Dougherty:
Structural intervention of gene regulatory networks by general rank-k matrix perturbation. ICASSP 2012: 729-732 - 2011
- [j13]Noushin Ghaffari, Ivan Ivanov, Xiaoning Qian, Edward R. Dougherty:
A CoD-based stationary control policy for intervening in large gene regulatory networks. BMC Bioinform. 12(S-10): S10 (2011) - [c12]Xiaoning Qian, Byung-Jun Yoon, Edward R. Dougherty:
Uncertainty-based essentiality in gene regulatory networks. GENSiPS 2011: 17-20 - 2010
- [j11]Noushin Ghaffari, Ivan Ivanov, Xiaoning Qian, Edward R. Dougherty:
A CoD-based reduction algorithm for designing stationary control policies on Boolean networks. Bioinform. 26(12): 1556-1563 (2010) - [j10]Xiaoning Qian, Noushin Ghaffari, Ivan Ivanov, Edward R. Dougherty:
State reduction for network intervention in probabilistic Boolean networks. Bioinform. 26(24): 3098-3104 (2010) - [j8]Edward R. Dougherty, Ranadip Pal, Xiaoning Qian, Michael L. Bittner, Aniruddha Datta:
Stationary and structural control in gene regulatory networks: basic concepts. Int. J. Syst. Sci. 41(1): 5-16 (2010) - [j6]Ivan Ivanov, Plamen Simeonov, Noushin Ghaffari, Xiaoning Qian, Edward R. Dougherty:
Selection policy-induced reduction mappings for Boolean networks. IEEE Trans. Signal Process. 58(9): 4871-4882 (2010) - [c10]Xiaoning Qian, Edward R. Dougherty:
A comparative study on sensitivities of Boolean networks. GENSiPS 2010: 1-4 - 2009
- [j5]Xiaoning Qian, Ivan Ivanov, Noushin Ghaffari, Edward R. Dougherty:
Intervention in gene regulatory networks via greedy control policies based on long-run behavior. BMC Syst. Biol. 3: 61 (2009) - [c7]Xiaoning Qian, Edward R. Dougherty:
Control-compatible state reduction for Boolean networks. GENSiPS 2009: 1-2 - 2008
- [j2]Xiaoning Qian, Edward R. Dougherty:
Effect of Function Perturbation on the Steady-State Distribution of Genetic Regulatory Networks: Optimal Structural Intervention. IEEE Trans. Signal Process. 56(10-1): 4966-4976 (2008)
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