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ORCIDDaisuke Kihara
- > Home > Persons > Daisuke Kihara
Publications
- 2022
[j53]Luca Gagliardi
, Andrea Raffo, Ulderico Fugacci, Silvia Biasotti, Walter Rocchia, Hao Huang, Boulbaba Ben Amor, Yi Fang, Yuanyuan Zhang, Xiao Wang, Charles Christoffer, Daisuke Kihara, Apostolos Axenopoulos, Stelios K. Mylonas, Petros Daras:
SHREC 2022: Protein-ligand binding site recognition. Comput. Graph. 107: 20-31 (2022)- 2021
- [j48]Andrea Raffo, Ulderico Fugacci, Silvia Biasotti, Walter Rocchia, Yonghuai Liu, Ekpo Otu, Reyer Zwiggelaar, David Hunter, Evangelia I. Zacharaki, Eleftheria Psatha, Dimitrios Laskos, Gerasimos Arvanitis, Konstantinos Moustakas, Tunde Aderinwale, Charles Christoffer, Woong-Hee Shin, Daisuke Kihara, Andrea Giachetti, Huu-Nghia Nguyen, Tuan-Duy Nguyen, Vinh-Thuyen Nguyen-Truong, Danh Le-Thanh, Hai-Dang Nguyen, Minh-Triet Tran:
SHREC 2021: Retrieval and classification of protein surfaces equipped with physical and chemical properties. Comput. Graph. 99: 1-21 (2021) - [j46]Charles Christoffer, Siyang Chen, Vijay Bharadwaj, Tunde Aderinwale, Vidhur Kumar, Matin Hormati, Daisuke Kihara:
LZerD webserver for pairwise and multiple protein-protein docking. Nucleic Acids Res. 49(Webserver-Issue): 359-365 (2021) - [c12]Florent Langenfeld, Tunde Aderinwale, Charles Christoffer, Woong-Hee Shin, Genki Terashi, Xiao Wang, Daisuke Kihara, Halim Benhabiles, Karim Hammoudi, Adnane Cabani, Féryal Windal, Mahmoud Melkemi, Ekpo Otu, Reyer Zwiggelaar, David Hunter, Yonghuai Liu, Léa Sirugue, Huu-Nghia H. Nguyen, Tuan-Duy H. Nguyen, Vinh-Thuyen Nguyen-Truong, Danh Le, Hai-Dang Nguyen, Minh-Triet Tran, Matthieu Montès:
SHREC 2021: Surface-based Protein Domains Retrieval. 3DOR 2021: 19-26 - 2020
- [j44]Xiao Wang, Genki Terashi, Charles Christoffer, Mengmeng Zhu, Daisuke Kihara:
Protein docking model evaluation by 3D deep convolutional neural networks. Bioinform. 36(7): 2113-2118 (2020) - [j43]Florent Langenfeld, Yuxu Peng, Yu-Kun Lai, Paul L. Rosin, Tunde Aderinwale, Genki Terashi, Charles Christoffer, Daisuke Kihara, Halim Benhabiles, Karim Hammoudi, Adnane Cabani, Féryal Windal, Mahmoud Melkemi, Andrea Giachetti, Stelios K. Mylonas, Apostolos Axenopoulos, Petros Daras, Ekpo Otu, Matthieu Montès:
SHREC 2020: Multi-domain protein shape retrieval challenge. Comput. Graph. 91: 189-198 (2020) - [p1]Genki Terashi, Charles Christoffer, Daisuke Kihara:
Path-LZerD: Predicting Assembly Order of Multimeric Protein Complexes. Protein-Protein Interaction Networks 2020: 95-112 - 2019
- [j36]Xusi Han, Atilla Sit, Charles Christoffer, Siyang Chen, Daisuke Kihara:
A global map of the protein shape universe. PLoS Comput. Biol. 15(4) (2019) - [r1]Xusi Han, Woong-Hee Shin, Charles Christoffer, Genki Terashi, Lyman Monroe, Daisuke Kihara:
Study of the Variability of the Native Protein Structure. Encyclopedia of Bioinformatics and Computational Biology (3) 2019: 606-619 - 2018
- [j34]Lenna X. Peterson, Yoichiro Togawa, Juan Esquivel-Rodríguez, Genki Terashi, Charles Christoffer, Amitava Roy, Woong-Hee Shin, Daisuke Kihara:
Modeling the assembly order of multimeric heteroprotein complexes. PLoS Comput. Biol. 14(1) (2018) - 2017
- [j29]Lenna X. Peterson, Amitava Roy, Charles Christoffer, Genki Terashi, Daisuke Kihara:
Modeling disordered protein interactions from biophysical principles. PLoS Comput. Biol. 13(4) (2017) - [c6]Na Song, Daniela Craciun, Charles Christoffer, Xusi Han, Daisuke Kihara, Guillaume Levieux, Matthieu Montès, Hong Qin, Pranjal Sahu, Genki Terashi, Haiguang Liu:
Protein Shape Retrieval. 3DOR@Eurographics 2017 - 2016
- [j24]Woong-Hee Shin, Charles Christoffer, Ji-Bo Wang, Daisuke Kihara:
PL-PatchSurfer2: Improved Local Surface Matching-Based Virtual Screening Method That Is Tolerant to Target and Ligand Structure Variation. J. Chem. Inf. Model. 56(9): 1676-1691 (2016) - 2015
- [j21]Juan Esquivel-Rodríguez, Yi Xiong, Xusi Han, Shuomeng Guang, Charles Christoffer, Daisuke Kihara:
Navigating 3D electron microscopy maps with EM-SURFER. BMC Bioinform. 16: 181:1-181:9 (2015)
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