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Dean C. Barratt
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Publications
- 2024
- [j34]Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
Long-Term Dependency for 3D Reconstruction of Freehand Ultrasound Without External Tracker. IEEE Trans. Biomed. Eng. 71(3): 1033-1042 (2024) - [i42]Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Dean C. Barratt, Victor A. Prisacariu, Yipeng Hu:
Semi-weakly-supervised neural network training for medical image registration. CoRR abs/2402.10728 (2024) - [i41]Martynas Pocius, Wen Yan, Dean C. Barratt, Mark Emberton, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed:
Weakly supervised localisation of prostate cancer using reinforcement learning for bi-parametric MR images. CoRR abs/2402.13778 (2024) - 2023
- [j32]Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Henkjan Huisman, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu:
Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration. Medical Image Anal. 90: 102935 (2023) - [c58]Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
Trackerless Freehand Ultrasound with Sequence Modelling and Auxiliary Transformation Over Past and Future Frames. ISBI 2023: 1-5 - [c57]Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
Privileged Anatomical and Protocol Discrimination in Trackerless 3D Ultrasound Reconstruction. ASMUS@MICCAI 2023: 142-151 - [c56]Shaheer U. Saeed, Tom Syer, Wen Yan, Qianye Yang, Mark Emberton, Shonit Punwani, Matthew John Clarkson, Dean C. Barratt, Yipeng Hu:
Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusion. MIDL 2023: 814-828 - [c55]Weixi Yi, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed:
Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS Images. MLMI@MICCAI (1) 2023: 277-288 - [i39]Shaheer U. Saeed, Tom Syer, Wen Yan, Qianye Yang, Mark Emberton, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu:
Bi-parametric prostate MR image synthesis using pathology and sequence-conditioned stable diffusion. CoRR abs/2303.02094 (2023) - [i37]Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
Privileged Anatomical and Protocol Discrimination in Trackerless 3D Ultrasound Reconstruction. CoRR abs/2308.10293 (2023) - [i36]Weixi Yi, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu, Shaheer U. Saeed:
Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS Images. CoRR abs/2308.11376 (2023) - [i35]Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
Long-term Dependency for 3D Reconstruction of Freehand Ultrasound Without External Tracker. CoRR abs/2310.10248 (2023) - 2022
- [j28]Ester Bonmati, Yipeng Hu, Alexander Grimwood, Gavin J. Johnson, George Goodchild, Margaret G. Keane, Kurinchi Gurusamy, Brian R. Davidson, Matthew J. Clarkson, Stephen P. Pereira, Dean C. Barratt:
Voice-Assisted Image Labeling for Endoscopic Ultrasound Classification Using Neural Networks. IEEE Trans. Medical Imaging 41(6): 1311-1319 (2022) - [j27]Qianye Yang, David Atkinson, Yunguan Fu, Tom Syer, Wen Yan, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Tom Vercauteren, Yipeng Hu:
Cross-Modality Image Registration Using a Training-Time Privileged Third Modality. IEEE Trans. Medical Imaging 41(11): 3421-3431 (2022) - [c51]Iani J. M. B. Gayo, Shaheer U. Saeed, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu:
Strategising Template-Guided Needle Placement for MR-targeted Prostate Biopsy. CaPTion@MICCAI 2022: 149-158 - [i29]Iani J. M. B. Gayo, Shaheer U. Saeed, Dean C. Barratt, Matthew J. Clarkson, Yipeng Hu:
Strategising template-guided needle placement for MR-targeted prostate biopsy. CoRR abs/2207.10784 (2022) - [i26]Qianye Yang, David Atkinson, Yunguan Fu, Tom Syer, Wen Yan, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Tom Vercauteren, Yipeng Hu:
Cross-Modality Image Registration using a Training-Time Privileged Third Modality. CoRR abs/2207.12901 (2022) - [i24]Yiwen Li, Yunguan Fu, Iani J. M. B. Gayo, Qianye Yang, Zhe Min, Shaheer U. Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Henkjan J. Huisman, Dean C. Barratt, Victor Adrian Prisacariu, Yipeng Hu:
Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration. CoRR abs/2209.05160 (2022) - [i22]Qi Li, Ziyi Shen, Qian Li, Dean C. Barratt, Thomas Dowrick, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
Trackerless freehand ultrasound with sequence modelling and auxiliary transformation over past and future frames. CoRR abs/2211.04867 (2022) - [i21]Shaheer U. Saeed, João Ramalhinho, Mark A. Pinnock, Ziyi Shen, Yunguan Fu, Nina Montaña Brown, Ester Bonmati, Dean C. Barratt, Stephen P. Pereira, Brian R. Davidson, Matthew J. Clarkson, Yipeng Hu:
Active learning using adaptable task-based prioritisation. CoRR abs/2212.01703 (2022) - 2021
- [c47]Qianye Yang, Tom Vercauteren, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Vasilis Stavrinides, Caroline M. Moore, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu:
Morphological Change Forecasting For Prostate Glands Using Feature-Based Registration And Kernel Density Extrapolation. ISBI 2021: 1072-1076 - [c46]Alexander Grimwood, João Ramalhinho, Zachary M. C. Baum, Nina Montaña Brown, Gavin J. Johnson, Yipeng Hu, Matthew J. Clarkson, Stephen P. Pereira, Dean C. Barratt, Ester Bonmati:
Endoscopic Ultrasound Image Synthesis Using a Cycle-Consistent Adversarial Network. ASMUS@MICCAI 2021: 169-178 - [i20]Qianye Yang, Tom Vercauteren, Yunguan Fu, Francesco Giganti, Nooshin Ghavami, Vasilis Stavrinides, Caroline M. Moore, Matthew J. Clarkson, Dean C. Barratt, Yipeng Hu:
Morphological Change Forecasting for Prostate Glands using Feature-based Registration and Kernel Density Extrapolation. CoRR abs/2101.06425 (2021) - [i15]Ester Bonmati, Yipeng Hu, Alexander Grimwood, Gavin J. Johnson, George Goodchild, Margaret G. Keane, Kurinchi Gurusamy, Brian R. Davidson, Matthew J. Clarkson, Stephen P. Pereira, Dean C. Barratt:
Voice-assisted Image Labelling for Endoscopic Ultrasound Classification using Neural Networks. CoRR abs/2110.06367 (2021) - 2020
- [j25]Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
DeepReg: a deep learning toolkit for medical image registration. J. Open Source Softw. 5(55): 2705 (2020) - [i9]Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
DeepReg: a deep learning toolkit for medical image registration. CoRR abs/2011.02580 (2020) - 2019
- [c36]João Ramalhinho, Henry F. J. Tregidgo, Moustafa Allam, Nikolina Travlou, Kurinchi Gurusamy, Brian R. Davidson, David J. Hawkes, Dean C. Barratt, Matthew J. Clarkson:
Registration of Untracked 2D Laparoscopic Ultrasound Liver Images to CT Using Content-Based Retrieval and Kinematic Priors. SUSI/PIPPI@MICCAI 2019: 11-19 - 2018
- [j23]Ester Bonmati, Yipeng Hu, Eli Gibson, Laura Uribarri, Geri Keane, Kurinchi Gurusamy, Brian R. Davidson, Stephen P. Pereira, Matthew J. Clarkson, Dean C. Barratt:
Determination of optimal ultrasound planes for the initialisation of image registration during endoscopic ultrasound-guided procedures. Int. J. Comput. Assist. Radiol. Surg. 13(6): 875-883 (2018) - [j22]João Ramalhinho, Maria R. Robu, Stephen A. Thompson, Kurinchi Gurusamy, Brian R. Davidson, David J. Hawkes, Dean C. Barratt, Matthew J. Clarkson:
A pre-operative planning framework for global registration of laparoscopic ultrasound to CT images. Int. J. Comput. Assist. Radiol. Surg. 13(8): 1177-1186 (2018) - [j19]Eli Gibson, Francesco Giganti, Yipeng Hu, Ester Bonmati, Steve Bandula, Kurinchi Gurusamy, Brian R. Davidson, Stephen P. Pereira, Matthew J. Clarkson, Dean C. Barratt:
Automatic Multi-Organ Segmentation on Abdominal CT With Dense V-Networks. IEEE Trans. Medical Imaging 37(8): 1822-1834 (2018) - 2017
- [j16]Yipeng Hu, Veeru Kasivisvanathan, Lucy A. M. Simmons, Matthew J. Clarkson, Stephen A. Thompson, Taimur T. Shah, Hashim Uddin Ahmed, Shonit Punwani, David J. Hawkes, Mark Emberton, Caroline M. Moore, Dean C. Barratt:
Development and Phantom Validation of a 3-D-Ultrasound-Guided System for Targeting MRI-Visible Lesions During Transrectal Prostate Biopsy. IEEE Trans. Biomed. Eng. 64(4): 946-958 (2017) - [c27]Eli Gibson, Francesco Giganti, Yipeng Hu, Ester Bonmati, Steve Bandula, Kurinchi Gurusamy, Brian R. Davidson, Stephen P. Pereira, Matthew J. Clarkson, Dean C. Barratt:
Towards Image-Guided Pancreas and Biliary Endoscopy: Automatic Multi-organ Segmentation on Abdominal CT with Dense Dilated Networks. MICCAI (1) 2017: 728-736 - [c26]Eli Gibson, Maria R. Robu, Stephen A. Thompson, Eddie Edwards, Crispin Schneider, Kurinchi Gurusamy, Brian R. Davidson, David J. Hawkes, Dean C. Barratt, Matthew J. Clarkson:
Deep residual networks for automatic segmentation of laparoscopic videos of the liver. Medical Imaging: Image-Guided Procedures 2017: 101351M - [c25]João Ramalhinho, Maria Robu, Stephen A. Thompson, Philip J. Edwards, Crispin Schneider, Kurinchi Gurusamy, David J. Hawkes, Brian R. Davidson, Dean C. Barratt, Matthew J. Clarkson:
Breathing motion compensated registration of laparoscopic liver ultrasound to CT. Medical Imaging: Image-Guided Procedures 2017: 101352V - 2016
- [c24]Ester Bonmati, Yipeng Hu, Kurinchi Gurusamy, Brian R. Davidson, Stephen P. Pereira, Matthew J. Clarkson, Dean C. Barratt:
Assessment of Electromagnetic Tracking Accuracy for Endoscopic Ultrasound. CARE@MICCAI 2016: 36-47 - 2015
- [j15]Yi Song, Johannes Totz, Steve Thompson, Stian Flage Johnsen, Dean C. Barratt, Crispin Schneider, Kurinchi Gurusamy, Brian R. Davidson, Sébastien Ourselin, David J. Hawkes, Matthew J. Clarkson:
Locally rigid, vessel-based registration for laparoscopic liver surgery. Int. J. Comput. Assist. Radiol. Surg. 10(12): 1951-1961 (2015)
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