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Sérgio Matos
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Publications
- 2023
- [j33]Sara Duarte-Pereira, Sérgio Matos, José Luís Oliveira, Raquel M. Silva:
Study of NAD-interacting proteins highlights the extent of NAD regulatory roles in the cell and its potential as a therapeutic target. J. Integr. Bioinform. 20(2) (2023) - [c47]Richard Adolph Aires Jonker, Roshan Poudel, Olga Fajarda, José Luís Oliveira, Rui Pedro Lopes, Sérgio Matos:
DyPrune: Dynamic Pruning Rates for Neural Networks. EPIA (1) 2023: 146-157 - 2022
- [c46]Richard Adolph Aires Jonker, Roshan Poudel, Olga Fajarda, Sérgio Matos, José Luís Oliveira, Rui Pedro Lopes:
Portuguese Twitter Dataset on COVID-19. ASONAM 2022: 332-338 - [c43]Sara Duarte-Pereira, Sérgio Matos, José Luís Oliveira, Raquel M. Silva:
The NAD Interactome, Identification of Putative New NAD-Binding Proteins. PACBB 2022: 43-54 - 2021
- [j30]João Rafael Almeida, João Figueira Silva, Sérgio Matos, José Luís Oliveira:
A two-stage workflow to extract and harmonize drug mentions from clinical notes into observational databases. J. Biomed. Informatics 120: 103849 (2021) - [c42]Alina Trifan, Sérgio Matos, Pedro Morgado, José Luís Oliveira:
Bilingual Emotion Analysis on Social Media throughout the COVID19 Pandemic in Portugal. HEALTHINF 2021: 430-434 - [c37]João Rafael Almeida, João Figueira Silva, Sérgio Matos, Alejandro Pazos, José Luís Oliveira:
A Recommender System to Help Refining Clinical Research Studies. MIE 2021: 327-331 - 2020
- [c36]João Rafael Almeida, João Figueira Silva, Alejandro Pazos Sierra, Sérgio Matos, José Luís Oliveira:
Enhancing Decision-making Systems with Relevant Patient Information by Leveraging Clinical Notes. HEALTHINF 2020: 254-262 - [c35]João Rafael Almeida, João Figueira Silva, Alejandro Pazos Sierra, Sérgio Matos, José Luís Oliveira:
Leveraging Clinical Notes for Enhancing Decision-Making Systems with Relevant Patient Information. BIOSTEC (Selected Papers) 2020: 521-540 - [c32]Alina Trifan, Rui Antunes, Sérgio Matos, José Luís Oliveira:
Understanding Depression from Psycholinguistic Patterns in Social Media Texts. ECIR (2) 2020: 402-409 - 2018
- [c23]Vitor Pereira, Sérgio Matos, José Luís Oliveira:
Automated ICD-9-CM medical coding of diabetic patient's clinical reports. DATA 2018: 23:1-23:6 - 2016
- [j20]Sun Kim, Rezarta Islamaj Dogan, Andrew Chatr-aryamontri, Christie S. Chang, Rose Oughtred, Jennifer M. Rust, Riza Batista-Navarro, Jacob Carter, Sophia Ananiadou, Sérgio Matos, André Santos, David Campos, José Luís Oliveira, Onkar Singh, Jitendra Jonnagaddala, Hong-Jie Dai, Emily Chia-Yu Su, Yung-Chun Chang, Yu-Chen Su, Chun-Han Chu, Chien Chin Chen, Wen-Lian Hsu, Yifan Peng, Cecilia N. Arighi, Cathy H. Wu, K. Vijay-Shanker, Ferhat Aydin, Zehra Melce Hüsünbeyi, Arzucan Özgür, Soo-Yong Shin, Dongseop Kwon, Kara Dolinski, Mike Tyers, W. John Wilbur, Donald C. Comeau:
BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID. Database J. Biol. Databases Curation 2016 (2016) - [j19]Sérgio Matos, David Campos, Renato P. Pinho, Raquel M. Silva, Matthew E. Mort, David N. Cooper, José Luís Oliveira:
Mining clinical attributes of genomic variants through assisted literature curation in Egas. Database J. Biol. Databases Curation 2016 (2016) - [c18]Eriksson J. Melicio Monteiro, Pedro Sernadela, Sérgio Matos, Carlos Costa, José Luís Oliveira:
Semantic Knowledge Base Construction from Radiology Reports. HEALTHINF 2016: 345-352 - [c17]André Santos, Sérgio Matos, David Campos, José Luís Oliveira:
A Curation Pipeline and Web-Services for PDF Documents. SMBM 2016: 75-79 - 2015
- [j16]Jorge A. Vanegas, Sérgio Matos, Fabio A. González, José Luís Oliveira:
An Overview of Biomolecular Event Extraction from Scientific Documents. Comput. Math. Methods Medicine 2015: 571381:1-571381:19 (2015) - [j14]David Campos, Sérgio Matos, José Luís Oliveira:
A document processing pipeline for annotating chemical entities in scientific documents. J. Cheminformatics 7(S-1): S7 (2015) - [c15]Pedro Sernadela, Sérgio Matos, José Luís Oliveira:
Ann2RDF: moving annotations to semantic web. iiWAS 2015: 52:1-52:5 - [c14]Pedro Sernadela, Pedro Lopes, David Campos, Sérgio Matos, José Luís Oliveira:
A Semantic Layer for Unifying and Exploring Biomedical Document Curation Results. IWBBIO (1) 2015: 8-17 - [c12]Sérgio Matos, José Sequeira, José Luís Oliveira:
BioinformaticsUA: Machine Learning and Rule-Based Recognition of Disorders and Clinical Attributes from Patient Notes. SemEval@NAACL-HLT 2015: 422-426 - 2014
- [j13]David Campos, Jóni Lourenço, Sérgio Matos, José Luís Oliveira:
Egas: a collaborative and interactive document curation platform. Database J. Biol. Databases Curation 2014 (2014) - [j12]Edgar D. Coelho, Joel Arrais, Sérgio Matos, Carlos Pereira, Nuno Rosa, Maria José Correia, Marlene Barros, José Luís Oliveira:
Computational prediction of the human-microbial oral interactome. BMC Syst. Biol. 8: 24 (2014) - [j11]David Campos, Quoc-Chinh Bui, Sérgio Matos, José Luís Oliveira:
TrigNER: automatically optimized biomedical event trigger recognition on scientific documents. Source Code Biol. Medicine 9: 1 (2014) - [c11]Tiago Nunes, Sérgio Matos, José Luís Oliveira:
Extracting Sentences Describing Biomolecular Events from the Biomedical Literature. DCAI 2014: 417-424 - [c10]Sérgio Matos, Tiago Nunes, José Luís Oliveira:
BioinformaticsUA: Concept Recognition in Clinical Narratives Using a Modular and Highly Efficient Text Processing Framework. SemEval@COLING 2014: 135-139 - 2013
- [j10]Tiago Nunes, David Campos, Sérgio Matos, José Luís Oliveira:
BeCAS: biomedical concept recognition services and visualization. Bioinform. 29(15): 1915-1916 (2013) - [j9]David Campos, Sérgio Matos, José Luís Oliveira:
Gimli: open source and high-performance biomedical name recognition. BMC Bioinform. 14: 54 (2013) - [j8]David Campos, Sérgio Matos, José Luís Oliveira:
A modular framework for biomedical concept recognition. BMC Bioinform. 14: 281 (2013) - [c9]Sérgio Matos, Hugo Araújo, José Luís Oliveira:
Structuring and Exploring the Biomedical Literature Using Latent Semantics. DCAI 2013: 609-616 - [c7]Edgar D. Coelho, Joel Arrais, Sérgio Matos, Nuno Rosa, Maria José Correia, Marlene Barros, José Luís Oliveira:
Computational Approach to Predict Inter-Species Oral Protein-Protein Interactions. IWBBIO 2013: 193-194 - [c6]Víctor M. Prieto, Sérgio Matos, Manuel Álvarez, Fidel Cacheda, José Luís Oliveira:
Analysing Relevant Diseases from Iberian Tweets. PACBB 2013: 69-76 - 2012
- [j7]David Campos, Sérgio Matos, Ian Lewin, José Luís Oliveira, Dietrich Rebholz-Schuhmann:
Harmonization of gene/protein annotations: towards a gold standard MEDLINE. Bioinform. 28(9): 1253-1261 (2012) - 2011
- [j4]Sérgio Matos, José Luís Oliveira:
Classification methods for finding articles describing protein-protein interactions in PubMed. J. Integr. Bioinform. 8(3) (2011) - [c5]Sérgio Matos, José Luís Oliveira:
Prioritizing Literature Search Results Using a Training Set of Classified Documents. PACBB 2011: 381-388 - 2010
- [j3]Sérgio Matos, Joel Arrais, João Maia-Rodrigues, José Luís Oliveira:
Concept-based query expansion for retrieving gene related publications from MEDLINE. BMC Bioinform. 11: 212 (2010) - [c4]David Campos, Sérgio Matos, José Luís Oliveira:
Recognition of Gene/Protein Names using Conditional Random Fields. KDIR 2010: 275-280 - [c3]Sérgio Matos, Joel Arrais, José Luís Oliveira:
Expanding Gene-Based PubMed Queries. IWPACBB 2010: 61-68 - [c2]Joel Arrais, João E. Pereira, Pedro Lopes, Sérgio Matos, José Luís Oliveira:
Improving Cross Mapping in Biomedical Databases. IWPACBB 2010: 69-76 - 2009
- [c1]Sérgio Matos, Anabela Barreiro, José Luís Oliveira:
Syntactic Parsing for Bio-molecular Event Detection from Scientific Literature. EPIA 2009: 79-85
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