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Tetsuo Shibuya
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Publications
- 2023
- [j27]Zixuan Wang, Yi Zhou, Tatsuya Takagi, Jiangning Song, Yu-Shi Tian, Tetsuo Shibuya:
Genetic algorithm-based feature selection with manifold learning for cancer classification using microarray data. BMC Bioinform. 24(1): 139 (2023) - [c39]Quentin Hillebrand, Vorapong Suppakitpaisarn, Tetsuo Shibuya:
Unbiased Locally Private Estimator for Polynomials of Laplacian Variables. KDD 2023: 741-751 - [i5]Quentin Hillebrand, Vorapong Suppakitpaisarn, Tetsuo Shibuya:
Communication Cost Reduction for Subgraph Counting under Local Differential Privacy via Hash Functions. CoRR abs/2312.07055 (2023) - 2022
- [c32]Arda Akdemir, Yeojoo Jeon, Tetsuo Shibuya:
Developing Language Resources and NLP Tools for the North Korean Language. LREC 2022: 5595-5600 - 2021
- [c29]Arda Akdemir, Tetsuo Shibuya:
UDON: Unsupervised Data SelectiON for Biomedical Entity Recognition. ICCBD 2021: 1-7 - 2020
- [j25]Yao-zhong Zhang, Arda Akdemir, Georg Tremmel, Seiya Imoto, Satoru Miyano, Tetsuo Shibuya, Rui Yamaguchi:
Nanopore basecalling from a perspective of instance segmentation. BMC Bioinform. 21-S(3): 136 (2020) - [c27]Arda Akdemir, Tetsuo Shibuya:
Transfer Learning for Biomedical Question Answering. CLEF (Working Notes) 2020 - [c26]Arda Akdemir, Tetsuo Shibuya, Tunga Güngör:
Subword Contextual Embeddings for Languages with Rich Morphology. ICMLA 2020: 994-1001 - [c25]Taku Onodera, Tetsuo Shibuya:
Wear Leveling Revisited. ISAAC 2020: 65:1-65:17 - [i4]Arda Akdemir, Tetsuo Shibuya, Tunga Güngör:
Hierarchical Multi Task Learning with Subword Contextual Embeddings for Languages with Rich Morphology. CoRR abs/2004.12247 (2020) - [i3]Arda Akdemir, Tetsuo Shibuya:
Analyzing the Effect of Multi-task Learning for Biomedical Named Entity Recognition. CoRR abs/2011.00425 (2020) - 2019
- [j24]Yoichi Sasaki, Tetsuo Shibuya, Kimihito Ito, Hiroki Arimura:
Efficient Approximate 3-Dimensional Point Set Matching Using Root-Mean-Square Deviation Score. IEICE Trans. Fundam. Electron. Commun. Comput. Sci. 102-A(9): 1159-1170 (2019) - [j23]Naoki Katoh, Yuya Higashikawa, Hiro Ito, Shun Kataoka, Takuya Kida, Toshiki Saitoh, Tetsuo Shibuya, Kazuyuki Tanaka, Yushi Uno:
Preface for the Special Issue on the Project "Foundation of Innovative Algorithms for Big Data". Rev. Socionetwork Strateg. 13(2): 99-100 (2019) - 2018
- [c24]Taku Onodera, Tetsuo Shibuya:
Succinct Oblivious RAM. STACS 2018: 52:1-52:16 - [i2]Taku Onodera, Tetsuo Shibuya:
Succinct Oblivious RAM. CoRR abs/1804.08285 (2018) - 2016
- [c23]Taku Onodera, Tetsuo Shibuya:
Fast Classification of Protein Structures by an Alignment-Free Kernel. SPIRE 2016: 68-79 - 2015
- [j21]Tetsuo Shibuya, Chuan Yi Tang, Paul Horton, Kiyoshi Asai:
Guest Editorial for the 25th International Conference on Genome Informatics (GIW/ISCB-Asia 2014). IEEE ACM Trans. Comput. Biol. Bioinform. 12(4): 761-762 (2015) - [j20]Wing-Kin Sung, Kunihiko Sadakane, Tetsuo Shibuya, Abha Belorkar, Iana Pyrogova:
An O(m, log m)-Time Algorithm for Detecting Superbubbles. IEEE ACM Trans. Comput. Biol. Bioinform. 12(4): 770-777 (2015) - [c22]Yang Li, Tetsuo Shibuya:
Malphite: A convolutional neural network and ensemble learning based protein secondary structure predictor. BIBM 2015: 1260-1266 - [c20]Yoichi Sasaki, Tetsuo Shibuya, Kimihito Ito, Hiroki Arimura:
Efficient Approximate 3-Dimensional Point Set Matching Using Root-Mean-Square Deviation Score. SISAP 2015: 191-203 - 2014
- [j19]Tetsuo Shibuya, Chuan Yi Tang, Paul Horton, Kiyoshi Asai:
Editorial. J. Bioinform. Comput. Biol. 12(6) (2014) - [c19]Tomohiko Ohtsuki, Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato, Yosuke Kawai, Yumi Yamaguchi-Kabata, Tetsuo Shibuya, Masao Nagasaki:
SVEM: A Structural Variant Estimation Method Using Multi-mapped Reads on Breakpoints. AlCoB 2014: 208-219 - 2013
- [c17]Taku Onodera, Tetsuo Shibuya:
The Gapped Spectrum Kernel for Support Vector Machines. MLDM 2013: 1-15 - [c16]Taku Onodera, Kunihiko Sadakane, Tetsuo Shibuya:
Detecting Superbubbles in Assembly Graphs. WABI 2013: 338-348 - [i1]Taku Onodera, Kunihiko Sadakane, Tetsuo Shibuya:
Detecting Superbubbles in Assembly Graphs. CoRR abs/1307.7925 (2013) - 2012
- [j17]Ritsuko Onuki, Ryo Yamada, Rui Yamaguchi, Minoru Kanehisa, Tetsuo Shibuya:
Population Model-Based Inter-Diplotype Similarity Measure for Accurate Diplotype Clustering. J. Comput. Biol. 19(1): 55-67 (2012) - [c15]Alexander Bowe, Taku Onodera, Kunihiko Sadakane, Tetsuo Shibuya:
Succinct de Bruijn Graphs. WABI 2012: 225-235 - [e1]Tetsuo Shibuya, Hisashi Kashima, Jun Sese, Shandar Ahmad:
Pattern Recognition in Bioinformatics - 7th IAPR International Conference, PRIB 2012, Tokyo, Japan, November 8-10, 2012. Proceedings. Lecture Notes in Computer Science 7632, Springer 2012, ISBN 978-3-642-34122-9 [contents] - 2011
- [c14]Taku Onodera, Tetsuo Shibuya:
An Index Structure for Spaced Seed Search. ISAAC 2011: 764-772 - [c13]Daisuke Kimura, Tetsuji Kuboyama, Tetsuo Shibuya, Hisashi Kashima:
A Subpath Kernel for Rooted Unordered Trees. PAKDD (1) 2011: 62-74 - 2010
- [j14]Tetsuo Shibuya, Jesper Jansson, Kunihiko Sadakane:
Linear-time protein 3-D structure searching with insertions and deletions. Algorithms Mol. Biol. 5: 7 (2010) - 2009
- [c11]Tetsuo Shibuya, Jesper Jansson, Kunihiko Sadakane:
Linear-Time Protein 3-D Structure Searching with Insertions and Deletions. WABI 2009: 310-320 - 2004
- [j6]Tetsuo Shibuya, Hisashi Kashima, Akihiko Konagaya:
Efficient filtering methods for clustering cDNAs with spliced sequence alignment. Bioinform. 20(1): 29-39 (2004) - 2003
- [c8]Tetsuo Shibuya, Igor Kurochkin:
Match Chaining Algorithms for cDNA Mapping. WABI 2003: 462-475 - 2002
- [j3]Hiroshi Kawazoe, Tetsuo Shibuya, Takeshi Tokuyama:
Optimal Online Algorithms for an Electronic Commerce Money Distribution System. Algorithmica 33(3): 287-299 (2002) - 1999
- [c4]Hiroshi Kawazoe, Tetsuo Shibuya, Takeshi Tokuyama:
Optimal On-line Algorithms for an Electronic Commerce Money Distribution System. SODA 1999: 527-536 - 1997
- [j1]Tetsuo Shibuya, Hiroshi Imai:
New Flexible Approaches for Multiple Sequence Alignment. J. Comput. Biol. 4(3): 385-413 (1997) - [c3]Tetsuo Shibuya, Hiroshi Imai:
New flexible approaches for multiple sequence alignment. RECOMB 1997: 267-276 - 1996
- [c2]Tetsuo Shibuya, Hiroshi Imai, Shigeki Nishimura, Hiroshi Shimoura, Kenji Tenmoku:
Detour Queries in Geographical Databases for Navigation and Related Algorithm Animations. CODAS 1996: 246- - [c1]Tsuyoshi Ono, Yoshiaki Kyoda, Tomonari Masada, Kazuyoshi Hayase, Tetsuo Shibuya, Motoki Nakade, Mary Inaba, Hiroshi Imai, Keiko Imai, David Avis:
A Package for Triangulations. SCG 1996: V-17-V-18
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