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Chun-Chi Liu
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Publications
- 2019
- [j18]Jianrong Li, Chun-Yip Tong, Tsai-Jung Sung, Ting-Yu Kang, Xianghong Jasmine Zhou, Chun-Chi Liu:
CMEP: a database for circulating microRNA expression profiling. Bioinform. 35(17): 3127-3132 (2019) - 2016
- [j14]Wei-Ting Liu, Chia-Chun Yang, Rong-Kuen Chen, Woei-Shyuan Jwo, Chih-Wen Wu, Wen-Yen Ting, Dah-Pyng Shung, Chun-Chi Liu, Jeremy J. W. Chen:
RiceATM: a platform for identifying the association between rice agronomic traits and miRNA expression. Database J. Biol. Databases Curation 2016 (2016) - [j13]Yu-Chen Liu, Jianrong Li, Chuan-Hu Sun, Erik Andrews, Rou-Fang Chao, Feng-Mao Lin, Shun-Long Weng, Sheng-Da Hsu, Chieh-Chen Huang, Chao Cheng, Chun-Chi Liu, Hsien-Da Huang:
CircNet: a database of circular RNAs derived from transcriptome sequencing data. Nucleic Acids Res. 44(Database-Issue): 209-215 (2016) - [j12]Chih-Hung Chou, Nai-Wen Chang, Sirjana Shrestha, Sheng-Da Hsu, Yu-Ling Lin, Wei-Hsiang Lee, Chi-Dung Yang, Hsiao-Chin Hong, Ting-Yen Wei, Siang-Jyun Tu, Tzi-Ren Tsai, Shu-Yi Ho, Ting-Yan Jian, Hsin-Yi Wu, Pin-Rong Chen, Nai-Chieh Lin, Hsin-Tzu Huang, Tzu-Ling Yang, Chung-Yuan Pai, Chun-San Tai, Wen-Liang Chen, Chia-Yen Huang, Chun-Chi Liu, Shun-Long Weng, Kuang-Wen Liao, Wen-Lian Hsu, Hsien-Da Huang:
miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database. Nucleic Acids Res. 44(Database-Issue): 239-247 (2016) - [j11]Jianrong Li, Chuan-Hu Sun, Wenyuan Li, Rou-Fang Chao, Chieh-Chen Huang, Xianghong Jasmine Zhou, Chun-Chi Liu:
Cancer RNA-Seq Nexus: a database of phenotype-specific transcriptome profiling in cancer cells. Nucleic Acids Res. 44(Database-Issue): 944-951 (2016) - 2015
- [j10]Yu-Ting Tseng, Wenyuan Li, Ching-Hsien Chen, Shi-Hua Zhang, Jeremy J. W. Chen, Xianghong Jasmine Zhou, Chun-Chi Liu:
IIIDB: a database for isoform-isoform interactions and isoform network modules. BMC Genom. 16(S-2): S10 (2015) - 2014
- [j9]Sheng-Da Hsu, Yu-Ting Tseng, Sirjana Shrestha, Yu-Ling Lin, Anas Khaleel, Chih-Hung Chou, Chao-Fang Chu, Hsi-Yuan Huang, Ching-Min Lin, Shu-Yi Ho, Ting-Yan Jian, Feng-Mao Lin, Tzu-Hao Chang, Shun-Long Weng, Kuang-Wen Liao, I-En Liao, Chun-Chi Liu, Hsien-Da Huang:
miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions. Nucleic Acids Res. 42(Database-Issue): 78-85 (2014) - [j8]David T. W. Tzeng, Yu-Ting Tseng, Matthew Ung, I-En Liao, Chun-Chi Liu, Chao Cheng:
DPRP: a database of phenotype-specific regulatory programs derived from transcription factor binding data. Nucleic Acids Res. 42(Database-Issue): 178-183 (2014) - [j7]Chun-Chi Liu, Yu-Ting Tseng, Wenyuan Li, Chia-Yu Wu, Ilya Mayzus, Andrey Rzhetsky, Fengzhu Sun, Michael S. Waterman, Jeremy J. W. Chen, Preet M. Chaudhary, Joseph Loscalzo, Edward Crandall, Xianghong Jasmine Zhou:
DiseaseConnect: a comprehensive web server for mechanism-based disease-disease connections. Nucleic Acids Res. 42(Webserver-Issue): 137-146 (2014) - 2012
- [j6]Wenyuan Li, Shi-Hua Zhang, Chun-Chi Liu, Xianghong Jasmine Zhou:
Identifying multi-layer gene regulatory modules from multi-dimensional genomic data. Bioinform. 28(19): 2458-2466 (2012) - [j5]Wenyuan Li, Chao Dai, Chun-Chi Liu, Xianghong Jasmine Zhou:
Algorithm to Identify Frequent Coupled Modules from Two-Layered Network Series: Application to Study Transcription and Splicing Coupling. J. Comput. Biol. 19(6): 710-730 (2012) - 2011
- [j4]Wenyuan Li, Chun-Chi Liu, Tong Zhang, Haifeng Li, Michael S. Waterman, Xianghong Jasmine Zhou:
Integrative Analysis of Many Weighted Co-Expression Networks Using Tensor Computation. PLoS Comput. Biol. 7(6) (2011) - 2009
- [j3]Chun-Chi Liu, Jianjun Hu, Mrinal Kalakrishnan, Haiyan Huang, Xianghong Jasmine Zhou:
Integrative disease classification based on cross-platform microarray data. BMC Bioinform. 10(S-1) (2009) - [c3]Rutu Mulkar-Mehta, Jerry R. Hobbs, Chun-Chi Liu, Xianghong Jasmine Zhou:
Discovering Causal and Temporal Relations in Biomedical Texts. AAAI Spring Symposium: Learning by Reading and Learning to Read 2009: 74-80 - [c2]Ruoming Jin, Scott McCallen, Chun-Chi Liu, Yang Xiang, Eivind Almaas, Xianghong Jasmine Zhou:
Identifying Dynamic Network Modules with Temporal and Spatial Constraints. Pacific Symposium on Biocomputing 2009: 203-214 - 2007
- [j2]Chun-Chi Liu, Chin-Chung Lin, Ker-Chau Li, Wen-Shyen E. Chen, Jiun-Ching Chen, Ming-Te Yang, Pan-Chyr Yang, Pei-Chun Chang, Jeremy J. W. Chen:
Genome-wide identification of specific oligonucleotides using artificial neural network and computational genomic analysis. BMC Bioinform. 8 (2007) - 2006
- [j1]Chun-Chi Liu, Chin-Chung Lin, Wen-Shyen E. Chen, Hsuan-Yu Chen, Pei-Chun Chang, Jeremy J. W. Chen, Pan-Chyr Yang:
CRSD: a comprehensive web server for composite regulatory signature discovery. Nucleic Acids Res. 34(Web-Server-Issue): 571-577 (2006) - 2005
- [c1]Chun-Chi Liu, Wen-Shyen E. Chen, Pei-Chun Chang, Jeremy J. W. Chen:
Topological-based classification using artificial gene networks. IEEE ICCI 2005: 49-56
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