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2010 – today
- 2017
[j19]Yang Xie, Jinyong Ying, Dexuan Xie:
SMPBS: Web server for computing biomolecular electrostatics using finite element solvers of size modified Poisson-Boltzmann equation. Journal of Computational Chemistry 38(8): 541-552 (2017)- 2016
- [j18]Dexuan Xie, Jinyong Ying:
A new box iterative method for a class of nonlinear interface problems with application in solving Poisson-Boltzmann equation. J. Computational Applied Mathematics 307: 319-334 (2016) - [j17]Dexuan Xie, Yi Jiang:
A nonlocal modified Poisson-Boltzmann equation and finite element solver for computing electrostatics of biomolecules. J. Comput. Physics 322: 1-20 (2016) - 2015
- [j16]Jinyong Ying, Dexuan Xie:
A new finite element and finite difference hybrid method for computing electrostatics of ionic solvated biomolecule. J. Comput. Physics 298: 636-651 (2015) - 2014
- [j15]Dexuan Xie:
New solution decomposition and minimization schemes for Poisson-Boltzmann equation in calculation of biomolecular electrostatics. J. Comput. Physics 275: 294-309 (2014) - 2013
- [j14]Dexuan Xie, Yi Jiang, L. Ridgway Scott:
Efficient Algorithms for a Nonlocal Dielectric Model for Protein in Ionic Solvent. SIAM J. Scientific Computing 35(6) (2013) - 2012
- [j13]Dexuan Xie, Yi Jiang, Peter R. Brune, L. Ridgway Scott:
A Fast Solver for a Nonlocal Dielectric Continuum Model. SIAM J. Scientific Computing 34(2) (2012) - 2011
- [j12]Dexuan Xie, Mazen G. Zarrouk:
Convergence analysis of truncated incomplete Hessian Newton minimization method and application in biomolecular potential energy minimization. Comp. Opt. and Appl. 48(2): 213-232 (2011) - [j11]Dexuan Xie:
An improved approximate Newton method for implicit Runge-Kutta formulas. J. Computational Applied Mathematics 235(17): 5249-5258 (2011)
2000 – 2009
- 2009
- [j10]Dexuan Xie, Qin Ni:
An incomplete Hessian Newton minimization method and its application in a chemical database problem. Comp. Opt. and Appl. 44(3): 467-485 (2009) - [j9]Dexuan Xie:
New parallel symmetric SOR preconditioners by multi-type partitioning. Int. J. Comput. Math. 86(2): 287-300 (2009) - [j8]Dexuan Xie, Ranjan K. Dash, Daniel A. Beard:
An improved algorithm and its parallel implementation for solving a general blood-tissue transport and metabolism model. J. Comput. Physics 228(20): 7850-7861 (2009) - 2006
- [j7]Dexuan Xie:
A New Block Parallel SOR Method and Its Analysis. SIAM J. Scientific Computing 27(5): 1513-1533 (2006) - 2004
- [c2]Dexuan Xie:
An Effective Compressed Sparse Preconditioner for Large Scale Biomolecular Simulations. CIS 2004: 64-70 - [c1]
- 2003
- [j6]Dexuan Xie, Suresh B. Singh, Eugene M. Fluder:
Principal component analysis combined with truncated-Newton minimization for dimensionality reduction of chemical databases. Math. Program. 95(1): 161-185 (2003) - 2002
- [j5]Dexuan Xie, Tamar Schlick:
A More Lenient Stopping Rule for Line Search Algorithms. Optimization Methods and Software 17(4): 683-700 (2002) - 2000
- [j4]Dexuan Xie, Alexander Tropsha, Tamar Schlick:
An Efficient Projection Protocol for Chemical Databases: Singular Value Decomposition Combined with Truncated-Newton Minimization. Journal of Chemical Information and Computer Sciences 40(1): 167-177 (2000)
1990 – 1999
- 1999
- [j3]Dexuan Xie, Tamar Schlick:
Efficient Implementation of the Truncated-Newton Algorithm for Large-Scale Chemistry Applications. SIAM Journal on Optimization 10(1): 132-154 (1999) - [j2]Dexuan Xie, Loyce Adams:
New Parallel SOR Method by Domain Partitioning. SIAM J. Scientific Computing 20(6): 2261-2281 (1999) - [j1]Dexuan Xie, Tamar Schlick:
Remark on Algorithm 702 - the updated truncated Newton minimization package. ACM Trans. Math. Softw. 25(1): 108-122 (1999)
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