Anil Wipat

Goksel Misirli, Anil Wipat, Joseph Mullen, Katherine James, Matthew R. Pocock, Wendy Smith, Nick Allenby, Jennifer Hallinan: BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology. J. Integrative Bioinformatics 10(2) (2013)

Matthew Collison, Robert P. Hirt, Anil Wipat, Sirintra Nakjang, Philippe Sanseau, James R. Brown: Data mining the human gut microbiota for therapeutic targets. Briefings in Bioinformatics 13(6): 751-768 (2012)

Jochen Weile, Katherine James, Jennifer Hallinan, Simon J. Cockell, Phillip W. Lord, Anil Wipat, Darren J. Wilkinson: Bayesian integration of networks without gold standards. Bioinformatics 28(11): 1495-1500 (2012)

Keith Flanagan, Sirintra Nakjang, Jennifer Hallinan, Colin Harwood, Robert P. Hirt, Matthew R. Pocock, Anil Wipat: Microbase2.0: A Generic Framework for Computationally Intensive Bioinformatics Workflows in the Cloud. J. Integrative Bioinformatics 9(2) (2012)

Jennifer Hallinan, S. Park, Anil Wipat: Bridging the Gap between Design and Reality - A Dual Evolutionary Strategy for the Design of Synthetic Genetic Circuits. BIOINFORMATICS 2012: 263-268

Goksel Misirli, Jennifer Hallinan, Tommy Yu, James R. Lawson, Sarala M. Wimalaratne, Mike T. Cooling, Anil Wipat: Model annotation for synthetic biology: automating model to nucleotide sequence conversion. Bioinformatics 27(7): 973-979 (2011)

Jochen Weile, Matthew R. Pocock, Simon J. Cockell, Phillip W. Lord, James M. Dewar, Eva-Maria Holstein, Darren J. Wilkinson, David A. Lydall, Jennifer Hallinan, Anil Wipat: Customizable views on semantically integrated networks for systems biology. Bioinformatics 27(9): 1299-1306 (2011)

Nicolas Alcaraz, Hande Kücük, Jochen Weile, Anil Wipat, Jan Baumbach: KeyPathwayMiner: Detecting Case-Specific Biological Pathways Using Expression Data. Internet Mathematics 7(4): 299-313 (2011)

BalaKrishna Kolluru, Sirintra Nakjang, Robert P. Hirt, Anil Wipat, Sophia Ananiadou: Automatic extraction of microorganisms and their habitats from free text using text mining workflows. J. Integrative Bioinformatics 8(2) (2011)

Mike T. Cooling, V. Rouilly, Goksel Misirli, James R. Lawson, Tommy Yu, Jennifer Hallinan, Anil Wipat: Standard virtual biological parts: a repository of modular modeling components for synthetic biology. Bioinformatics 26(7): 925-931 (2010)

Simon J. Cockell, Jochen Weile, Phillip W. Lord, Claire Wipat, Dmytro Andriychenko, Matthew R. Pocock, Darren J. Wilkinson, Malcolm Young, Anil Wipat: An integrated dataset for in silico drug discovery. J. Integrative Bioinformatics 7(3) (2010)

Allyson L. Lister, Matthew R. Pocock, Morgan Taschuk, Anil Wipat: Saint: a lightweight integration environment for model annotation. Bioinformatics 25(22): 3026-3027 (2009)

Jennifer Hallinan, Matthew R. Pocock, Stephen G. Addinall, David A. Lydall, Anil Wipat: Clustering incorporating shortest paths identifies relevant modules in functional interaction networks. CIBCB 2009: 228-236

Katherine James, Anil Wipat, Jennifer Hallinan: Integration of Full-Coverage Probabilistic Functional Networks with Relevance to Specific Biological Processes. DILS 2009: 31-46

Jennifer Hallinan, Anil Wipat: Network motifs in context: An exploration of the evolution of oscillatory dynamics in transcriptional networks. CIBCB 2008: 83-89

L. Jason Steggles, Richard Banks, Oliver Shaw, Anil Wipat: Qualitatively modelling and analysing genetic regulatory networks: a Petri net approach. Bioinformatics 23(3): 336-343 (2007)

Allyson L. Lister, Matthew R. Pocock, Anil Wipat: Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models. J. Integrative Bioinformatics 4(3) (2007)

Yudong Sun, Anil Wipat, Matthew R. Pocock, P. A. Lee, Keith Flanagan, J. T. Worthington: Exploring Microbial Genome Sequences to Identify Protein Families on the Grid. IEEE Transactions on Information Technology in Biomedicine 11(4): 435-442 (2007)

Jennifer Hallinan, Anil Wipat: Motifs and Modules in Fractured Functional Yeast Networks. CIBCB 2007: 189-196

Thomas M. Oinn, R. Mark Greenwood, Matthew Addis, M. Nedim Alpdemir, Justin Ferris, Kevin Glover, Carole A. Goble, Antoon Goderis, Duncan Hull, Darren Marvin, Peter Li, Phillip W. Lord, Matthew R. Pocock, Martin Senger, Robert Stevens, Anil Wipat, Chris Wroe: Taverna: lessons in creating a workflow environment for the life sciences. Concurrency and Computation: Practice and Experience 18(10): 1067-1100 (2006)

Oliver Shaw, L. Jason Steggles, Anil Wipat: Automatic Parameterisation of Stochastic Petri Net Models of Biological Networks. Electr. Notes Theor. Comput. Sci. 151(3): 111-129 (2006)

Jennifer Hallinan, Anil Wipat: Clustering and Cross-talk in a Yeast Functional Interaction Network. CIBCB 2006: 1-8

L. Jason Steggles, Richard Banks, Anil Wipat: Modelling and Analysing Genetic Networks: From Boolean Networks to Petri Nets. CMSB 2006: 127-141

Yudong Sun, Anil Wipat, Matthew R. Pocock, P. A. Lee, P. Watson, Keith Flanagan, J. T. Worthington: A grid-based system for microbial genome comparison and analysis. CCGRID 2005: 977-984

Thomas M. Oinn, Matthew Addis, Justin Ferris, Darren Marvin, Martin Senger, R. Mark Greenwood, Tim Carver, Kevin Glover, Matthew R. Pocock, Anil Wipat, Peter Li: Taverna: a tool for the composition and enactment of bioinformatics workflows. Bioinformatics 20(17): 3045-3054 (2004)

O. J. Shaw, Colin Harwood, L. Jason Steggles, Anil Wipat: SARGE: a tool for creation of putative genetic networks. Bioinformatics 20(18): 3638-3640 (2004)

Thomas M. Oinn, Matthew Addis, Justin Ferris, Darren Marvin, R. Mark Greenwood, Carole A. Goble, Anil Wipat, Peter Li, Tim Carver: Delivering web service coordination capability to users. WWW (Alternate Track Papers & Posters) 2004: 438-439

Luc Moreau, Simon Miles, Carole A. Goble, R. Mark Greenwood, Vijay Dialani, Matthew Addis, M. Nedim Alpdemir, Rich Cawley, David De Roure, Justin Ferris, Robert J. Gaizauskas, Kevin Glover, Chris Greenhalgh, Peter Li, Xiaojian Liu, Phillip W. Lord, Michael Luck, Darren Marvin, Thomas M. Oinn, Norman W. Paton, Steve Pettifer, Milena V. Radenkovic, Angus Roberts, Alan J. Robinson, Tom Rodden, Martin Senger, Nick Sharman, Robert Stevens, Brian Warboys, Anil Wipat, Chris Wroe: On the Use of Agents in BioInformatics Grid. CCGRID 2003: 653-660