Gabriel Valiente

Gabriel Valiente, Graziano Pesole: Editorial. Briefings in Bioinformatics 13(6): 645 (2012)

Monica Santamaria, Bruno Fosso, Arianna Consiglio, Giorgio De Caro, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Marinella Marzano, Daniel Alonso-Alemany, Gabriel Valiente, Graziano Pesole: Reference databases for taxonomic assignment in metagenomics. Briefings in Bioinformatics 13(6): 682-695 (2012)

Tetsuo Asano, Jesper Jansson, Kunihiko Sadakane, Ryuhei Uehara, Gabriel Valiente: Faster computation of the Robinson-Foulds distance between phylogenetic networks. Inf. Sci. 197: 77-90 (2012)

Paolo Ribeca, Gabriel Valiente: Computational challenges of sequence classification in microbiomic data. Briefings in Bioinformatics 12(6): 614-625 (2011)

José Carlos Clemente, Jesper Jansson, Gabriel Valiente: Flexible taxonomic assignment of ambiguous sequencing reads. BMC Bioinformatics 12: 8 (2011)

Moshe Lewenstein, Gabriel Valiente: CPM 2006. J. Discrete Algorithms 9(4): 313 (2011)

Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente: Comparison of Galled Trees. IEEE/ACM Trans. Comput. Biology Bioinform. 8(2): 410-427 (2011)

Mallika Veeramalai, David Gilbert, Gabriel Valiente: An optimized TOPS+ comparison method for enhanced TOPS models. BMC Bioinformatics 11: 138 (2010)

Miguel Arenas, Mateus Patricio, David Posada, Gabriel Valiente: Characterization of phylogenetic networks with NetTest. BMC Bioinformatics 11: 268 (2010)

Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente: Path lengths in tree-child time consistent hybridization networks. Inf. Sci. 180(3): 366-383 (2010)

Tetsuo Asano, Jesper Jansson, Kunihiko Sadakane, Ryuhei Uehara, Gabriel Valiente: Faster Computation of the Robinson-Foulds Distance between Phylogenetic Networks. CPM 2010: 190-201

José Carlos Clemente, Jesper Jansson, Gabriel Valiente: Accurate Taxonomic Assignment of Short Pyrosequencing Reads. Pacific Symposium on Biocomputing 2010: 3-9

Gabriel Valiente: Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R. Chapman and Hall / CRC mathematical and computational biology series, CRC Press 2009, isbn 978-1-4200-6973-0, pp. 1-352

Ricardo Alberich, Gabriel Cardona, Francesc Rosselló, Gabriel Valiente: An algebraic metric for phylogenetic trees. Appl. Math. Lett. 22(9): 1320-1324 (2009)

José Carlos Clemente, Kazuho Ikeo, Gabriel Valiente, Takashi Gojobori: Optimized ancestral state reconstruction using Sankoff parsimony. BMC Bioinformatics 10 (2009)

Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente: Metrics for Phylogenetic Networks I: Generalizations of the Robinson-Foulds Metric. IEEE/ACM Trans. Comput. Biology Bioinform. 6(1): 46-61 (2009)

Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente: Metrics for Phylogenetic Networks II: Nodal and Triplets Metrics. IEEE/ACM Trans. Comput. Biology Bioinform. 6(3): 454-469 (2009)

Gabriel Cardona, Francesc Rosselló, Gabriel Valiente: Comparison of Tree-Child Phylogenetic Networks. IEEE/ACM Trans. Comput. Biology Bioinform. 6(4): 552-569 (2009)

Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente: On Nakhleh's Metric for Reduced Phylogenetic Networks. IEEE/ACM Trans. Comput. Biology Bioinform. 6(4): 629-638 (2009)

Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente: The comparison of tree-sibling time consistent phylogenetic networks is graph isomorphism-complete. CoRR abs/0902.4640 (2009)

Francesc Rosselló, Gabriel Valiente: All that Glisters is not Galled. CoRR abs/0904.2448 (2009)

Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente: Comparison of Galled Trees. CoRR abs/0906.1166 (2009)

Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente: A distance metric for a class of tree-sibling phylogenetic networks. Bioinformatics 24(13): 1481-1488 (2008)

Gabriel Cardona, Francesc Rosselló, Gabriel Valiente: A perl package and an alignment tool for phylogenetic networks. BMC Bioinformatics 9 (2008)

Gabriel Cardona, Francesc Rosselló, Gabriel Valiente: Extended Newick: it is time for a standard representation of phylogenetic networks. BMC Bioinformatics 9 (2008)

Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabriel Valiente, Michal Ziv-Ukelson: Seeded Tree Alignment. IEEE/ACM Trans. Comput. Biology Bioinform. 5(4): 503-513 (2008)

Michael Sammeth, Gabriel Valiente, Roderic Guigó: Bubbles: Alternative Splicing Events of Arbitrary Dimension in Splicing Graphs. RECOMB 2008: 372-395

Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente: A Distance Metric for Tree-Sibling Time Consistent Phylogenetic Networks. CoRR abs/0803.2904 (2008)

Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente: Path lengths in tree-child time consistent hybridization networks. CoRR abs/0807.0087 (2008)

José Carlos Clemente, Kenji Satou, Gabriel Valiente: Phylogenetic reconstruction from non-genomic data. Bioinformatics 23(2): 110-115 (2007)

Paolo Ferragina, Raffaele Giancarlo, Valentina Greco, Giovanni Manzini, Gabriel Valiente: Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment. BMC Bioinformatics 8 (2007)

Ryuhei Uehara, Gabriel Valiente: Linear structure of bipartite permutation graphs and the longest path problem. Inf. Process. Lett. 103(2): 71-77 (2007)

Liliana Félix, Francesc Rosselló, Gabriel Valiente: Reconstructing Metabolic Pathways by Bidirectional Chemical Search. CMSB 2007: 217-232

Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabriel Valiente, Michal Ziv-Ukelson: Seeded Tree Alignment and Planar Tanglegram Layout. WABI 2007: 98-110

Gabriel Valiente: Efficient Algorithms on Trees and Graphs with Unique Node Labels. Applied Graph Theory in Computer Vision and Pattern Recognition 2007: 137-149

Gabriel Cardona, Francesc Rosselló, Gabriel Valiente: Tripartitions do not always discriminate phylogenetic networks. CoRR abs/0707.2376 (2007)

Gabriel Cardona, Francesc Rosselló, Gabriel Valiente: Comparison of Tree-Child Phylogenetic Networks. CoRR abs/0708.3499 (2007)

Gabriel Cardona, Francesc Rosselló, Gabriel Valiente: A Perl Package and an Alignment Tool for Phylogenetic Networks. CoRR abs/0711.3628 (2007)

Francesc Rosselló, Gabriel Valiente: An algebraic view of the relation between largest common subtrees and smallest common supertrees. Theor. Comput. Sci. 362(1-3): 33-53 (2006)

Moshe Lewenstein, Gabriel Valiente (Eds.): Combinatorial Pattern Matching, 17th Annual Symposium, CPM 2006, Barcelona, Spain, July 5-7, 2006, Proceedings. Lecture Notes in Computer Science 4009, Springer 2006, isbn 3-540-35455-7

Francesc Rosselló, Gabriel Valiente: An Algebraic View of the Relation between Largest Common Subtrees and Smallest Common Supertrees. CoRR abs/cs/0604108 (2006)

Francesc Rosselló, Gabriel Valiente: The transposition distance for phylogenetic trees. CoRR abs/q-bio/0604024 (2006)

Roderic D. M. Page, Gabriel Valiente: An edit script for taxonomic classifications. BMC Bioinformatics 6: 208 (2005)

Francesc Rosselló, Gabriel Valiente: Chemical Graphs, Chemical Reaction Graphs, and Chemical Graph Transformation. Electr. Notes Theor. Comput. Sci. 127(1): 157-166 (2005)

Gabriel Valiente: Constrained tree inclusion. J. Discrete Algorithms 3(2-4): 431-447 (2005)

Francesc Rosselló, Gabriel Valiente: Graph Transformation in Molecular Biology. Formal Methods in Software and Systems Modeling 2005: 116-133

Liliana Félix, Gabriel Valiente, Francesc Rosselló: Optimal Artificial Chemistries and Metabolic Pathways. ENC 2005: 298-305

Gabriel Valiente: A Fast Algorithmic Technique for Comparing Large Phylogenetic Trees. SPIRE 2005: 370-375

Mercè Llabrés, Jairo Rocha, Francesc Rosselló, Gabriel Valiente: On the Ancestral Compatibility of Two Phylogenetic Trees with Nested Taxa. CoRR abs/cs/0505086 (2005)

Gabriel Valiente: Trading uninitialized space for time. Inf. Process. Lett. 92(1): 9-13 (2004)

Gabriel Valiente: On the Algorithm of Berztiss for Tree Pattern Matching. ENC 2004: 43-49

Francesc Rosselló, Gabriel Valiente: Analysis of Metabolic Pathways by Graph Transformation. ICGT 2004: 70-82

Liliana Félix, Francesc Rosselló, Gabriel Valiente: Artificial Chemistries and Metabolic Pathways. Spanish Bioinformatics Conference 2004: 56-59

Mercè Llabrés, Francesc Rosselló, Gabriel Valiente: On Supertrees of Phylogenetic Trees. Spanish Bioinformatics Conference 2004: 142-145

Xavier Messeguer, Gabriel Valiente (Eds.): Proceedings of the 5th Annual Spanish Bioinformatics Conference, Barcelona, Catalonia, Spain, November 29-30, 2004. Technical University of Catalonia, Barcelona 2004, isbn 84-7653-863-4

Gabriel Valiente: Constrained Tree Inclusion. CPM 2003: 361-371

Gabriel Valiente: A New Simple Algorithm for the Maximum-Weight Independent Set Problem on Circle Graphs. ISAAC 2003: 129-137

Gabriel Valiente: Algorithms on Trees and Graphs. Springer 2002, isbn 3-540-43550-6

Javier Larrosa, Gabriel Valiente: Constraint Satisfaction Algorithms for Graph Pattern Matching. Mathematical Structures in Computer Science 12(4): 403-422 (2002)

Mirtha-Lina Fernández, Gabriel Valiente: A graph distance metric combining maximum common subgraph and minimum common supergraph. Pattern Recognition Letters 22(6/7): 753-758 (2001)

Gabriel Valiente: A General Method for Graph Isomorphism. FCT 2001: 428-431

Gabriel Valiente: An Efficient Bottom-Up Distance between Trees. SPIRE 2001: 212-219

Jordi Cortadella, Gabriel Valiente: A Relational View of Subgraph Isomorphism. RelMiCS 2000: 45-54

Ricardo A. Baeza-Yates, Gabriel Valiente: An Image Similarity Measure Based on Graph Matching. SPIRE 2000: 28-38

Peter Burmeister, Miquel Monserrat, Francesc Rosselló, Gabriel Valiente: Algebraic Transformation of Unary Partial Algebras II: Single-Pushout Approach. Theor. Comput. Sci. 216(1-2): 311-362 (1999)

Hans-Jörg Kreowski, Gabriel Valiente: Redundancy and Subsumption in High-Level Replacement Systems. TAGT 1998: 215-227

Peter Burmeister, Francesc Rosselló, Joan Torrens, Gabriel Valiente: Algebraic Transformation of Unary Partial Algebras I: Double-Pushout Approach. Theor. Comput. Sci. 184(1-2): 145-193 (1997)

Miquel Monserrat, Francesc Rosselló, Joan Torrens, Gabriel Valiente: Hypergraph rewriting using conformisms. Electr. Notes Theor. Comput. Sci. 2: 207-214 (1995)

Ricardo Alberich, Peter Burmeister, Francesc Rosselló, Gabriel Valiente, Boleslaw Wojdylo: A Partial Algebras Approach to Graph Transformation. TAGT 1994: 1-15

Gabriel Valiente: Input-Driven Control of Rule-Based Expert Systems. ISMIS 1993: 86-95

Gabriel Valiente: Using Layered Support Graphs for Verifying External Adequacy in Rule-Based Expert Systems. SIGART Bulletin 3(1): 20-24 (1992)

Gabriel Valiente: On Knowledge Base Redundancy Under Uncertain Reasoning. IPMU 1992: 321-329

Gabriel Valiente: On Being a Machine: A Review. AI Magazine 12(4): 96-97 (1991)