Simon Tavaré

Jonathan M. Cairns, Christiana Spyrou, Rory Stark, Mike L. Smith, Andy G. Lynch, Simon Tavaré: BayesPeak - an R package for analysing ChIP-seq data. Bioinformatics 27(5): 713-714 (2011)

Andrea Sottoriva, Louis Vermeulen, Simon Tavaré: Modeling Evolutionary Dynamics of Epigenetic Mutations in Hierarchically Organized Tumors. PLoS Computational Biology 7(5) (2011)

Sergii Ivakhno, Simon Tavaré: CNAnova: a new approach for finding recurrent copy number abnormalities in cancer SNP microarray data. Bioinformatics 26(11): 1395-1402 (2010)

Sergii Ivakhno, Tom Royce, Anthony J. Cox, Dirk J. Evers, R. Keira Cheetham, Simon Tavaré: CNAseg - a novel framework for identification of copy number changes in cancer from second-generation sequencing data. Bioinformatics 26(24): 3051-3058 (2010)

Mike L. Smith, Mark J. Dunning, Simon Tavaré, Andy G. Lynch: Identification and correction of previously unreported spatial phenomena using raw Illumina BeadArray data. BMC Bioinformatics 11: 208 (2010)

Matthew E. Ritchie, Matthew S. Forrest, Antigone S. Dimas, Caroline Daelemans, Emmanouil T. Dermitzakis, Panagiotis Deloukas, Simon Tavaré: Data analysis issues for allele-specific expression using Illumina's GoldenGate assay. BMC Bioinformatics 11: 280 (2010)

Matthew E. Ritchie, Benilton Carvalho, Kurt N. Hetrick, Simon Tavaré, Rafael A. Irizarry: R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips. Bioinformatics 25(19): 2621-2623 (2009)

Christiana Spyrou, Rory Stark, Andy G. Lynch, Simon Tavaré: BayesPeak: Bayesian analysis of ChIP-seq data. BMC Bioinformatics 10: 299 (2009)

Simon R. V. Knott, Christopher J. Viggiani, Oscar M. Aparicio, Simon Tavaré: Strategies for analyzing highly enriched IP-chip datasets. BMC Bioinformatics 10: 305 (2009)

Mark J. Dunning, Nuno L. Barbosa-Morais, Andy G. Lynch, Simon Tavaré, Matthew E. Ritchie: Statistical issues in the analysis of Illumina data. BMC Bioinformatics 9 (2008)

Mark J. Dunning, Mike L. Smith, Matthew E. Ritchie, Simon Tavaré: beadarray: R classes and methods for Illumina bead-based data. Bioinformatics 23(16): 2183-2184 (2007)

Dmitriy Skvortsov, Diana Abdueva, Michael E. Stitzer, Steven E. Finkel, Simon Tavaré: Using expression arrays for copy number detection: an example from E. coli. BMC Bioinformatics 8 (2007)

Pierre Nicolas, Kyoung-Mee Kim, Darryl Shibata, Simon Tavaré: The Stem Cell Population of the Human Colon Crypt: Analysis via Methylation Patterns. PLoS Computational Biology 3(3) (2007)

J. C. Marioni, Natalie P. Thorne, Simon Tavaré: BioHMM: a heterogeneous hidden Markov model for segmenting array CGH data. Bioinformatics 22(9): 1144-1146 (2006)

Richard Arratia, Andrew D. Barbour, Simon Tavaré: A Tale of Three Couplings: Poisson-Dirichlet and GEM Approximations for Random Permutations. Combinatorics, Probability & Computing 15(1-2): 31-62 (2006)

Simon Tavaré, Dean C. Adams, Olivier Fedrigo, Gavin J. P. Naylor: A Model for Phylogenetic Inference Using Structural and Chemical Covariates. Pacific Symposium on Biocomputing 2001: 215-225

Sophie Schbath, Nathalie Bossard, Simon Tavaré: The Effect of Nonhomogeneous Clone Length Distribution on the Progress of an STS Mapping Project. Journal of Computational Biology 7(1-2): 47-57 (2000)

Richard Arratia, Andrew D. Barbour, Simon Tavaré: The Poisson-Dirichlet Distribution And The Scale-Invariant Poisson Process. Combinatorics, Probability & Computing 8(5): 407-416 (1999)

Andrew D. Barbour, Simon Tavaré: A Rate for the Erdös-Turán Law. Combinatorics, Probability & Computing 3: 167-176 (1994)

Richard Arratia, Simon Tavaré: Limit Theorems for Combinatorial Structures via Discrete Process Approximations. Random Struct. Algorithms 3(3): 321-346 (1992)